MedBlast Result

MedBlast(0.8) Results
Direct References
Indirect References
Options
BLASTN
BLASTX
Direct References:
Hit	Evalue	SeqType	References
Z71281	0.0	N	Experientia 1996 Dec 15;52(12):1148-57 Nature 1997 May 29;387(6632 Suppl):93-8
X77114	0.0	N	Mol Gen Genet 1997 Mar 26;254(2):127-38 Yeast 1997 May;13(6):573-81 FEMS Microbiol Lett 1996 Nov 1;144(2-3):151-5 Genetics 1998 May;149(1):45-56 Yeast 1994 Jul;10(7):945-51
M22116	0.0	N	Mol Cell Biol 1988 Sep;8(9):3636-46
NP_014393	0.0	P
P12687	0.0	P
R6BYM7	0.0	P
AAA34794	0.0	P
CAA95864	0.0	P
CAA54379	0.0	P
P48535	6e-93	P
AAA79723	6e-93	P
NP_596173	5e-23	P
CAC19755	5e-23	P
References Summary:
Mason TL, Pan C, Sanchirico ME, Sirum-Connolly K
Molecular genetics of the peptidyl transferase center and the unusual Var1 protein in yeast mitochondrial ribosomes.
Experientia 1996 Dec 15;52(12):1148-57
PMID: 8988258
Philippsen P, Kleine K, Pohlmann R, Dusterhoft A, Hamberg K, Hegemann JH, Obermaier B, Urrestarazu LA, Aert R, Albermann K, Altmann R, Andre B, Baladron V, Ballesta JP, Becam AM, Beinhauer J, Boskovic J, Buitrago MJ, Bussereau F, Coster F, Crouzet M, D'Angelo M, Dal Pero F, De Antoni A, Hani J, et al
The nucleotide sequence of Saccharomyces cerevisiae chromosome XIV and its evolutionary implications.
Nature 1997 May 29;387(6632 Suppl):93-8
PMID: 9169873
Kemp JT, Balasubramanian MK, Gould KL
A wat1 mutant of fission yeast is defective in cell morphology.
Mol Gen Genet 1997 Mar 26;254(2):127-38
PMID: 9108274
el Moualij B, Duyckaerts C, Lamotte-Brasseur J, Sluse FE
Phylogenetic classification of the mitochondrial carrier family of Saccharomyces cerevisiae.
Yeast 1997 May;13(6):573-81
PMID: 9178508
Ragan MA, Logsdon JM Jr, Sensen CW, Charlebois RL, Doolittle WF
An archaebacterial homolog of pelota, a meiotic cell division protein in eukaryotes.
FEMS Microbiol Lett 1996 Nov 1;144(2-3):151-5
PMID: 8900058
Davis L, Engebrecht J
Yeast dom34 mutants are defective in multiple developmental pathways and exhibit decreased levels of polyribosomes.
Genetics 1998 May;149(1):45-56
PMID: 9584085
Verhasselt P, Aert R, Voet M, Volckaert G
Nucleotide sequence analysis of an 8887 bp region of the left arm of yeast chromosome XIV, encompassing the centromere sequence.
Yeast 1994 Jul;10(7):945-51
PMID: 7985421
Fearon K, Mason TL
Structure and regulation of a nuclear gene in Saccharomyces cerevisiae that specifies MRP7, a protein of the large subunit of the mitochondrial ribosome.
Mol Cell Biol 1988 Sep;8(9):3636-46
PMID: 2851722
Indirect References:
Hit	Evalue	SeqType	References
Z71281	0.0	N	mrpl2p (-) mrpl2 (-)
X77114	0.0	N
M22116	0.0	N
NP_014393	0.0	P	mrp7 Mol Cell Biol 1988 Sep;8(9):3636-46 Yeast 1994 Apr;10(4):523-33 Biochem Mol Biol Int 1993 Aug;30(5):911-9 Yeast 1994 Jul;10(7):945-51 Biotechniques 2000 Dec;29(6):1226-31 mrp7p (-)
P12687	0.0	P
R6BYM7	0.0	P
AAA34794	0.0	P
CAA95864	0.0	P	mrpl2p (-) mrpl2 (-)
CAA54379	0.0	P
P48535	6e-93	P
AAA79723	6e-93	P	mrp7 (...)
NP_596173	5e-23	P
CAC19755	5e-23	P
References Summary:
Lalo D, Stettler S, Mariotte S, Gendreau E, Thuriaux P
Organization of the centromeric region of chromosome XIV in Saccharomyces cerevisiae.
Yeast 1994 Apr;10(4):523-33
PMID: 7941739
Matsushita Y, Isono K
Transport of mitoribosomal proteins, YmL13 and MRP7, into isolated mitochondria of Saccharomyces cerevisiae.
Biochem Mol Biol Int 1993 Aug;30(5):911-9
PMID: 8220240
Gao CY, Pinkham JL
Tightly regulated, beta-estradiol dose-dependent expression system for yeast.
Biotechniques 2000 Dec;29(6):1226-31
PMID: 11126125
Options:
Limit of E-value: 1e-20
Limit of Length: 100000
Limit of references returned each search: 40
Limit of retry times: 3
Direct references: Yes
Indirect references: Yes
Allow symbol with hyphen: Yes
Use stop word list: Yes
Thesaurus:
- Saccharomyces cerevisiae (Version: 20021123.0)



 
BLASTN 2.2.5 [Nov-16-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
RID: 1048251328-028872-5045
Query= ORFN:YNL005C MRP7 SGDID:S0004950, Chr XIV from 621310-622425,
reverse complement
         (1116 letters)

Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences) 
           1,707,549 sequences; 7,931,913,529 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|1301819|emb|Z71281.1|SCYNL005C S.cerevisiae chromosome XIV re...  2171   0.0  
gi|496710|emb|X77114.1|SCN200XG s.cerevisiae N2005, N2007, N2009...  2163   0.0  
gi|171983|gb|M22116.1|YSCMRP7 Yeast (S.cerevisiae) mitochondrial...  2163   0.0  
gi|18425298|gb|AC011139.8| Homo sapiens chromosome 18, clone RP1...    46   0.12 
gi|28191379|gb|AC117373.10| Homo sapiens 12 BAC RP11-174M13 (Ros...    44   0.46 
gi|15808445|gb|AC092691.3| Homo sapiens 3q BAC RP11-768G7 (Roswe...    44   0.46 
gi|6466296|gb|AF022186.2|AF022186 Cyanidium caldarium strain RK1...    44   0.46 
gi|4982017|gb|AE001797.1|AE001797 Thermotoga maritima section 10...    44   0.46 
gi|3850556|gb|AC005294.1| Homo sapiens 12 BAC GSHB-410F4 (Genome...    42   1.8  
gi|24796729|gb|AC090937.2| Homo sapiens chromosome 3 clone RP11-...    42   1.8  
gi|4753235|gb|AC006464.3| Homo sapiens BAC clone RP11-436C12 fro...    42   1.8  
gi|23355546|gb|AC128686.7| Homo sapiens 3 BAC RP11-265C3 (Roswel...    42   1.8  
gi|18415147|ref|NM_120709.1| Arabidopsis thaliana chromosome 5  ...    42   1.8  
gi|21405385|gb|AY086675.1| Arabidopsis thaliana clone 267315 mRN...    42   1.8  
gi|2622806|gb|AE000926.1| Methanobacterium thermoautotrophicum f...    42   1.8  
gi|21263219|gb|AC067750.5| Homo sapiens chromosome 10 clone RP11...    42   1.8  
gi|15150602|gb|AC093179.1| Homo sapiens chromosome 3 clone RP11-...    42   1.8  
gi|10440729|gb|AC009403.5|AC009403 Homo sapiens clone RP5-1015O2...    42   1.8  
gi|13992190|emb|AL355096.4|CNS05TCF Human chromosome 14 DNA sequ...    42   1.8  
gi|8246868|emb|AL136365.9| Human DNA sequence from clone RP11-14...    42   1.8  
gi|13784997|emb|AL133318.11| Human DNA sequence from clone RP11-...    42   1.8  
gi|4914346|gb|AC007214.13|AC007214 Pan troglodytes 12cp12 BAC RP...    42   1.8  
gi|4662612|gb|AC006582.13|AC006582 Pan troglodytes 12cp12 BAC RP...    42   1.8  
gi|27688524|ref|XM_220699.1| Rattus norvegicus similar to CG1695...    40   7.1  
gi|2088743|gb|AF003142.1| Caenorhabditis elegans cosmid F57C9, c...    40   7.1  
gi|25046384|gb|AC084070.57| Mus musculus chromosome 5 clone rp23...    40   7.1  
gi|5306232|gb|AC007259.4| Arabidopsis thaliana chromosome I BAC ...    40   7.1  
gi|22002106|gb|AC084198.31| Homo sapiens 3 BAC RP11-454H13 (Rosw...    40   7.1  
gi|22330520|ref|NM_105587.2| Arabidopsis thaliana chromosome 1  ...    40   7.1  
gi|21358750|gb|AC105074.5| Homo sapiens chromosome 18, clone RP1...    40   7.1  
gi|9558559|gb|AC008180.15| Homo sapiens 3 BAC RP11-292L5 (Roswel...    40   7.1  
gi|20806323|gb|AC099789.2| Homo sapiens chromosome 1 clone RP11-...    40   7.1  
gi|2695813|emb|AL008987.1|HS849L7 Human DNA sequence from clone ...    40   7.1  
gi|3242219|emb|AL021398.1|HS964D12 Human DNA sequence from clone...    40   7.1  
gi|28412549|emb|AL954315.6| Mouse DNA sequence from clone RP23-1...    40   7.1  
gi|22204284|emb|AL627258.5| Zebrafish DNA sequence from clone RP...    40   7.1  
gi|14578190|gb|AC037473.7|AC037473 Homo sapiens chromosome 18, c...    40   7.1  
gi|26984919|emb|AL929046.9| Mouse DNA sequence from clone RP23-3...    40   7.1  
gi|26984766|emb|AL837522.8| Mouse DNA sequence from clone RP23-2...    40   7.1  
gi|26185908|emb|AL928979.4| Zebrafish DNA sequence from clone DK...    40   7.1  
gi|13162535|gb|AC078848.3|AC078848 Homo sapiens BAC clone CTD-22...    40   7.1  
gi|456522|emb|X63674.1|FMF1PEP1 F.meningosepticum f1pep1 gene fo...    40   7.1  
gi|12325073|gb|AC018364.5|AC018364 Arabidopsis thaliana chromoso...    40   7.1  
gi|5757471|gb|AC008262.4|AC008262 Genomic sequence for Arabidops...    40   7.1  
gi|8894643|emb|AL109942.13|HSJ473J16 Human DNA sequence from clo...    40   7.1  
gi|7159723|emb|AL035705.22|HS758N20 Human DNA sequence from clon...    40   7.1  
gi|14586418|emb|AL591769.3|CNS07EGM Human chromosome 14 DNA sequ...    40   7.1  
gi|14161102|emb|AL118559.6|CNS01DRU Human chromosome 14 DNA sequ...    40   7.1  
gi|13897305|emb|AL391749.4|CNS06C8I Human chromosome 14 DNA sequ...    40   7.1  
gi|11125392|emb|AL136300.22| Human DNA sequence from clone RP11-...    40   7.1  
gi|10800574|emb|AL356278.8| Human DNA sequence from clone RP11-5...    40   7.1  
gi|3108047|gb|AC004108.1|AC004108 Homo sapiens chromosome 17, cl...    40   7.1  
gi|16444670|emb|AL157714.8| Human DNA sequence from clone RP11-5...    40   7.1  
gi|26098575|dbj|AK079537.1| Mus musculus adult male hypothalamus...    40   7.1  
gi|20805164|dbj|AP004072.2| Oryza sativa (japonica cultivar-grou...    40   7.1  
gi|15718426|dbj|AP003279.2| Oryza sativa (japonica cultivar-grou...    40   7.1  
gi|4309961|gb|AC005993.2|AC005993 Homo sapiens PAC clone RP6-114...    40   7.1  
gi|3894208|gb|AC005016.1|AC005016 Homo sapiens BAC clone GS1-180...    40   7.1  
gi|15796545|emb|AL159141.5|CNS01RGQ Human chromosome 14 DNA sequ...    40   7.1  
gi|20339151|emb|AL670305.7| Mouse DNA sequence from clone RP23-2...    40   7.1  
gi|9758404|dbj|AB006700.2| Arabidopsis thaliana genomic DNA, chr...    40   7.1  

ALIGNMENTS
>gi|1301819|emb|Z71281.1|SCYNL005C S.cerevisiae chromosome XIV reading frame ORF YNL005c
          Length = 2353

 Score = 2171 bits (1095), Expect = 0.0
 Identities = 1109/1116 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    atgtggaatcctattttactagatacttctagtttttcattccaaaaacatgtgtctggt 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1450 atgtggaatcctattttactagatacttctagtttttcattccaaaaacatgtgtctggt 1391

                                                                        
Query: 61   gtgttccttcaagtgcgtaatgccaccaaaagggctgcgggctcgagaacaagtatgaag 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1390 gtgttccttcaagtgcgtaatgccaccaaaagggctgcgggctcgagaacaagtatgaag 1331

                                                                        
Query: 121  gattctgcaggaagaaggttaggaccnnnnnnntatgaaggccaggatgtttccacaggt 180
            ||||||||||||||||||||||||||       |||||||||||||||||||||||||||
Sbjct: 1330 gattctgcaggaagaaggttaggaccaaaaaaatatgaaggccaggatgtttccacaggt 1271

                                                                        
Query: 181  gaaattattatgaggcaaagaggaacaaagttttatcctggagaaaacgttggtataggg 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1270 gaaattattatgaggcaaagaggaacaaagttttatcctggagaaaacgttggtataggg 1211

                                                                        
Query: 241  aaagatcattccatattcgccttagaacctggtgttgttcgttactatcttgatcctttt 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1210 aaagatcattccatattcgccttagaacctggtgttgttcgttactatcttgatcctttt 1151

                                                                        
Query: 301  catcctaaaagaaaattcattggtgttgccttgaggcgtgatttgaaactgccatctcct 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1150 catcctaaaagaaaattcattggtgttgccttgaggcgtgatttgaaactgccatctcct 1091

                                                                        
Query: 361  cattttgagcctaccgtaaggaggtttggccgttttgagttaacaaataaaagggcagca 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1090 cattttgagcctaccgtaaggaggtttggccgttttgagttaacaaataaaagggcagca 1031

                                                                        
Query: 421  tataaggaagaaaattctatttctagaaaagactatctcgcaaaacctaatattttgaag 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1030 tataaggaagaaaattctatttctagaaaagactatctcgcaaaacctaatattttgaag 971

                                                                        
Query: 481  cagttagaggtcagggaatctaaaagaaaggagttacaagacaagttgagtaaggttctt 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970  cagttagaggtcagggaatctaaaagaaaggagttacaagacaagttgagtaaggttctt 911

                                                                        
Query: 541  cgggatgaacttaagttagatataaaagacatcgaattggcaacgtcatacttaattcgt 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910  cgggatgaacttaagttagatataaaagacatcgaattggcaacgtcatacttaattcgt 851

                                                                        
Query: 601  gtaagggcttccctgaagaatggataccccatagaagatgcaaggttcaatagtagatat 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850  gtaagggcttccctgaagaatggataccccatagaagatgcaaggttcaatagtagatat 791

                                                                        
Query: 661  tatttaaaagaagaagagcgtttgaaggcaaggagagaaagctggacgaatgagaaattg 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790  tatttaaaagaagaagagcgtttgaaggcaaggagagaaagctggacgaatgagaaattg 731

                                                                        
Query: 721  tcggagagtctatccaagattgatgagtgtagtgatcttttgaactcatctacatctttc 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730  tcggagagtctatccaagattgatgagtgtagtgatcttttgaactcatctacatctttc 671

                                                                        
Query: 781  aataacaagctagagctacaccagtatatttcggaacaagaaaaacaagctttgaaggca 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670  aataacaagctagagctacaccagtatatttcggaacaagaaaaacaagctttgaaggca 611

                                                                        
Query: 841  aaactattagaggacctagaaaaatcccaacacttagaaaccaaaaaagacaagaattat 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610  aaactattagaggacctagaaaaatcccaacacttagaaaccaaaaaagacaagaattat 551

                                                                        
Query: 901  attaaggcgcttttcaaggacgcttgtaattttttgactttatctgaagaagtacatttg 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550  attaaggcgcttttcaaggacgcttgtaattttttgactttatctgaagaagtacatttg 491

                                                                        
Query: 961  cgtaggaaatacttaaagtcggtcttccccgaaacagatagtacggttgaaaccaaaagc 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490  cgtaggaaatacttaaagtcggtcttccccgaaacagatagtacggttgaaaccaaaagc 431

                                                                        
Query: 1021 gggaagaagtcaattgtgtctagacgttttgattacaccaaaaataaagttgaagtcatt 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430  gggaagaagtcaattgtgtctagacgttttgattacaccaaaaataaagttgaagtcatt 371

                                                
Query: 1081 gctagaagtaggcgggcttttttgagcaagctttga 1116
            ||||||||||||||||||||||||||||||||||||
Sbjct: 370  gctagaagtaggcgggcttttttgagcaagctttga 335


>gi|496710|emb|X77114.1|SCN200XG s.cerevisiae N2005, N2007, N2009, N2012, N2014, N2016 genes
          Length = 8887

 Score = 2163 bits (1091), Expect = 0.0
 Identities = 1108/1116 (99%)
 Strand = Plus / Plus

                                                                        
Query: 1    atgtggaatcctattttactagatacttctagtttttcattccaaaaacatgtgtctggt 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6478 atgtggaatcctattttactagatacttctagtttttcattccaaaaacatgtgtctggt 6537

                                                                        
Query: 61   gtgttccttcaagtgcgtaatgccaccaaaagggctgcgggctcgagaacaagtatgaag 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6538 gtgttccttcaagtgcgtaatgccaccaaaagggctgcgggctcgagaacaagtatgaag 6597

                                                                        
Query: 121  gattctgcaggaagaaggttaggaccnnnnnnntatgaaggccaggatgtttccacaggt 180
            ||||||||||||||||||||||||||       |||||||||||||||||||||||||||
Sbjct: 6598 gattctgcaggaagaaggttaggaccaaaaaaatatgaaggccaggatgtttccacaggt 6657

                                                                        
Query: 181  gaaattattatgaggcaaagaggaacaaagttttatcctggagaaaacgttggtataggg 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6658 gaaattattatgaggcaaagaggaacaaagttttatcctggagaaaacgttggtataggg 6717

                                                                        
Query: 241  aaagatcattccatattcgccttagaacctggtgttgttcgttactatcttgatcctttt 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6718 aaagatcattccatattcgccttagaacctggtgttgttcgttactatcttgatcctttt 6777

                                                                        
Query: 301  catcctaaaagaaaattcattggtgttgccttgaggcgtgatttgaaactgccatctcct 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6778 catcctaaaagaaaattcattggtgttgccttgaggcgtgatttgaaactgccatctcct 6837

                                                                        
Query: 361  cattttgagcctaccgtaaggaggtttggccgttttgagttaacaaataaaagggcagca 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6838 cattttgagcctaccgtaaggaggtttggccgttttgagttaacaaataaaagggcagca 6897

                                                                        
Query: 421  tataaggaagaaaattctatttctagaaaagactatctcgcaaaacctaatattttgaag 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6898 tataaggaagaaaattctatttctagaaaagactatctcgcaaaacctaatattttgaag 6957

                                                                        
Query: 481  cagttagaggtcagggaatctaaaagaaaggagttacaagacaagttgagtaaggttctt 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6958 cagttagaggtcagggaatctaaaagaaaggagttacaagacaagttgagtaaggttctt 7017

                                                                        
Query: 541  cgggatgaacttaagttagatataaaagacatcgaattggcaacgtcatacttaattcgt 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7018 cgggatgaacttaagttagatataaaagacatcgaattggcaacgtcatacttaattcgt 7077

                                                                        
Query: 601  gtaagggcttccctgaagaatggataccccatagaagatgcaaggttcaatagtagatat 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7078 gtaagggcttccctgaagaatggataccccatagaagatgcaaggttcaatagtagatat 7137

                                                                        
Query: 661  tatttaaaagaagaagagcgtttgaaggcaaggagagaaagctggacgaatgagaaattg 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7138 tatttaaaagaagaagagcgtttgaaggcaaggagagaaagctggacgaatgagaaattg 7197

                                                                        
Query: 721  tcggagagtctatccaagattgatgagtgtagtgatcttttgaactcatctacatctttc 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7198 tcggagagtctatccaagattgatgagtgtagtgatcttttgaactcatctacatctttc 7257

                                                                        
Query: 781  aataacaagctagagctacaccagtatatttcggaacaagaaaaacaagctttgaaggca 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7258 aataacaagctagagctacaccagtatatttcggaacaagaaaaacaagctttgaaggca 7317

                                                                        
Query: 841  aaactattagaggacctagaaaaatcccaacacttagaaaccaaaaaagacaagaattat 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7318 aaactattagaggacctagaaaaatcccaacacttagaaaccaaaaaagacaagaattat 7377

                                                                        
Query: 901  attaaggcgcttttcaaggacgcttgtaattttttgactttatctgaagaagtacatttg 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7378 attaaggcgcttttcaaggacgcttgtaattttttgactttatctgaagaagtacatttg 7437

                                                                        
Query: 961  cgtaggaaatacttaaagtcggtcttccccgaaacagatagtacggttgaaaccaaaagc 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7438 cgtaggaaatacttaaagtcggtcttccccgaaacagatagtacggttgaaaccaaaagc 7497

                                                                        
Query: 1021 gggaagaagtcaattgtgtctagacgttttgattacaccaaaaataaagttgaagtcatt 1080
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 7498 gggaagaagtcaattgtgtctagacgtttggattacaccaaaaataaagttgaagtcatt 7557

                                                
Query: 1081 gctagaagtaggcgggcttttttgagcaagctttga 1116
            ||||||||||||||||||||||||||||||||||||
Sbjct: 7558 gctagaagtaggcgggcttttttgagcaagctttga 7593


>gi|171983|gb|M22116.1|YSCMRP7 Yeast (S.cerevisiae) mitochondrial 40 kd ribosomal protein large
            subunit gene, complete cds
          Length = 2016

 Score = 2163 bits (1091), Expect = 0.0
 Identities = 1108/1116 (99%)
 Strand = Plus / Plus

                                                                        
Query: 1    atgtggaatcctattttactagatacttctagtttttcattccaaaaacatgtgtctggt 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  atgtggaatcctattttactagatacttctagtttttcattccaaaaacatgtgtctggt 480

                                                                        
Query: 61   gtgttccttcaagtgcgtaatgccaccaaaagggctgcgggctcgagaacaagtatgaag 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  gtgttccttcaagtgcgtaatgccaccaaaagggctgcgggctcgagaacaagtatgaag 540

                                                                        
Query: 121  gattctgcaggaagaaggttaggaccnnnnnnntatgaaggccaggatgtttccacaggt 180
            ||||||||||||||||||||||||||       |||||||||||||||||||||||||||
Sbjct: 541  gattctgcaggaagaaggttaggaccaaaaaaatatgaaggccaggatgtttccacaggt 600

                                                                        
Query: 181  gaaattattatgaggcaaagaggaacaaagttttatcctggagaaaacgttggtataggg 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  gaaattattatgaggcaaagaggaacaaagttttatcctggagaaaacgttggtataggg 660

                                                                        
Query: 241  aaagatcattccatattcgccttagaacctggtgttgttcgttactatcttgatcctttt 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  aaagatcattccatattcgccttagaacctggtgttgttcgttactatcttgatcctttt 720

                                                                        
Query: 301  catcctaaaagaaaattcattggtgttgccttgaggcgtgatttgaaactgccatctcct 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  catcctaaaagaaaattcattggtgttgccttgaggcgtgatttgaaactgccatctcct 780

                                                                        
Query: 361  cattttgagcctaccgtaaggaggtttggccgttttgagttaacaaataaaagggcagca 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  cattttgagcctaccgtaaggaggtttggccgttttgagttaacaaataaaagggcagca 840

                                                                        
Query: 421  tataaggaagaaaattctatttctagaaaagactatctcgcaaaacctaatattttgaag 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  tataaggaagaaaattctatttctagaaaagactatctcgcaaaacctaatattttgaag 900

                                                                        
Query: 481  cagttagaggtcagggaatctaaaagaaaggagttacaagacaagttgagtaaggttctt 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  cagttagaggtcagggaatctaaaagaaaggagttacaagacaagttgagtaaggttctt 960

                                                                        
Query: 541  cgggatgaacttaagttagatataaaagacatcgaattggcaacgtcatacttaattcgt 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  cgggatgaacttaagttagatataaaagacatcgaattggcaacgtcatacttaattcgt 1020

                                                                        
Query: 601  gtaagggcttccctgaagaatggataccccatagaagatgcaaggttcaatagtagatat 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 gtaagggcttccctgaagaatggataccccatagaagatgcaaggttcaatagtagatat 1080

                                                                        
Query: 661  tatttaaaagaagaagagcgtttgaaggcaaggagagaaagctggacgaatgagaaattg 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 tatttaaaagaagaagagcgtttgaaggcaaggagagaaagctggacgaatgagaaattg 1140

                                                                        
Query: 721  tcggagagtctatccaagattgatgagtgtagtgatcttttgaactcatctacatctttc 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 tcggagagtctatccaagattgatgagtgtagtgatcttttgaactcatctacatctttc 1200

                                                                        
Query: 781  aataacaagctagagctacaccagtatatttcggaacaagaaaaacaagctttgaaggca 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 aataacaagctagagctacaccagtatatttcggaacaagaaaaacaagctttgaaggca 1260

                                                                        
Query: 841  aaactattagaggacctagaaaaatcccaacacttagaaaccaaaaaagacaagaattat 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 aaactattagaggacctagaaaaatcccaacacttagaaaccaaaaaagacaagaattat 1320

                                                                        
Query: 901  attaaggcgcttttcaaggacgcttgtaattttttgactttatctgaagaagtacatttg 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 attaaggcgcttttcaaggacgcttgtaattttttgactttatctgaagaagtacatttg 1380

                                                                        
Query: 961  cgtaggaaatacttaaagtcggtcttccccgaaacagatagtacggttgaaaccaaaagc 1020
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1381 cgtaggaaatacttaaagtcggtcttccccgaaacagatagtactgttgaaaccaaaagc 1440

                                                                        
Query: 1021 gggaagaagtcaattgtgtctagacgttttgattacaccaaaaataaagttgaagtcatt 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 gggaagaagtcaattgtgtctagacgttttgattacaccaaaaataaagttgaagtcatt 1500

                                                
Query: 1081 gctagaagtaggcgggcttttttgagcaagctttga 1116
            ||||||||||||||||||||||||||||||||||||
Sbjct: 1501 gctagaagtaggcgggcttttttgagcaagctttga 1536


>gi|18425298|gb|AC011139.8| Homo sapiens chromosome 18, clone RP11-1I2, complete sequence
          Length = 180360

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 402    aacaaataaaagggcagcatata 424
              |||||||||||||||||||||||
Sbjct: 141039 aacaaataaaagggcagcatata 141017


>gi|28191379|gb|AC117373.10| Homo sapiens 12 BAC RP11-174M13 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 175768

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 661    tatttaaaagaagaagagcgtt 682
              ||||||||||||||||||||||
Sbjct: 137295 tatttaaaagaagaagagcgtt 137274


>gi|15808445|gb|AC092691.3| Homo sapiens 3q BAC RP11-768G7 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 170215

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 860    aaaaatcccaacacttagaaac 881
              ||||||||||||||||||||||
Sbjct: 164942 aaaaatcccaacacttagaaac 164963


>gi|6466296|gb|AF022186.2|AF022186 Cyanidium caldarium strain RK1 chloroplast, complete genome
          Length = 164921

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 176   caggtgaaattattatgaggcaaagaggaacaaa 209
             ||||| |||||||  |||||||||||||||||||
Sbjct: 32009 caggtcaaattatagtgaggcaaagaggaacaaa 32042


>gi|4982017|gb|AE001797.1|AE001797 Thermotoga maritima section 109 of 136 of the complete genome
          Length = 9404

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 199  agaggaacaaagttttatcctggagaaaacgttggtat 236
            ||||||||||  |||||||| ||| |||||||||||||
Sbjct: 1623 agaggaacaagattttatcccggaaaaaacgttggtat 1586


>gi|3850556|gb|AC005294.1| Homo sapiens 12 BAC GSHB-410F4 (Genome Systems Human Bac Library)
             complete sequence
          Length = 113762

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 226   aacgttggtatagggaaagat 246
             |||||||||||||||||||||
Sbjct: 50473 aacgttggtatagggaaagat 50493


>gi|24796729|gb|AC090937.2| Homo sapiens chromosome 3 clone RP11-316A10 map 3p, complete sequence
          Length = 160702

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 923    cttgtaattttttgactttat 943
              |||||||||||||||||||||
Sbjct: 104197 cttgtaattttttgactttat 104177


>gi|4753235|gb|AC006464.3| Homo sapiens BAC clone RP11-436C12 from 2, complete sequence
          Length = 99908

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 481   cagttagaggtcagggaatct 501
             |||||||||||||||||||||
Sbjct: 86003 cagttagaggtcagggaatct 85983


>gi|23355546|gb|AC128686.7| Homo sapiens 3 BAC RP11-265C3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 90578

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 27    ttctagtttttcattccaaaa 47
             |||||||||||||||||||||
Sbjct: 31159 ttctagtttttcattccaaaa 31179


>gi|18415147|ref|NM_120709.1| Arabidopsis thaliana chromosome 5  CHR5v07142002 genomic sequence
          Length = 740

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 428 aagaaaattctatttctagaaaaga 452
           |||||||||||||||| ||||||||
Sbjct: 293 aagaaaattctatttcaagaaaaga 317


>gi|21405385|gb|AY086675.1| Arabidopsis thaliana clone 267315 mRNA, complete sequence
          Length = 740

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 428 aagaaaattctatttctagaaaaga 452
           |||||||||||||||| ||||||||
Sbjct: 293 aagaaaattctatttcaagaaaaga 317


>gi|2622806|gb|AE000926.1| Methanobacterium thermoautotrophicum from bases 1536655 to 1548777
            (section 132 of 148) of the complete genome
          Length = 12123

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 236  tagggaaagatcattccatat 256
            |||||||||||||||||||||
Sbjct: 9871 tagggaaagatcattccatat 9851


>gi|21263219|gb|AC067750.5| Homo sapiens chromosome 10 clone RP11-359E3, complete sequence
          Length = 203205

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 652   agtagatattatttaaaagaa 672
             |||||||||||||||||||||
Sbjct: 61952 agtagatattatttaaaagaa 61972


>gi|15150602|gb|AC093179.1| Homo sapiens chromosome 3 clone RP11-983J7 map 3p, complete sequence
          Length = 181321

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 923    cttgtaattttttgactttat 943
              |||||||||||||||||||||
Sbjct: 114043 cttgtaattttttgactttat 114063


>gi|10440729|gb|AC009403.5|AC009403 Homo sapiens clone RP5-1015O24, complete sequence
          Length = 168418

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 923   cttgtaattttttgactttat 943
             |||||||||||||||||||||
Sbjct: 44057 cttgtaattttttgactttat 44077


>gi|13992190|emb|AL355096.4|CNS05TCF Human chromosome 14 DNA sequence BAC R-168L7 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 189389

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 31    agtttttcattccaaaaacat 51
             |||||||||||||||||||||
Sbjct: 75483 agtttttcattccaaaaacat 75463


>gi|8246868|emb|AL136365.9| Human DNA sequence from clone RP11-143M15 on chromosome 9p23-24.3.
              Contains the DMRT1 gene for doublesex and mab-3 related
              transcription factor 1, the gene for a novel DM DNA binding
              domain containing protein, ESTs, GSSs and four putative CpG
              islands, complete sequence
          Length = 179006

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 840    aaaactattagaggacctagaaaaa 864
              ||||||||||||||||| |||||||
Sbjct: 109113 aaaactattagaggaccaagaaaaa 109137


>gi|13784997|emb|AL133318.11| Human DNA sequence from clone RP11-89L15 on chromosome 13, complete
             sequence
          Length = 81862

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 477   gaagcagttagaggtcagggaatct 501
             |||||||||||||||||||| ||||
Sbjct: 60835 gaagcagttagaggtcagggcatct 60811


>gi|4914346|gb|AC007214.13|AC007214 Pan troglodytes 12cp12 BAC RPCI43-135M19 (Roswell Park Cancer Institute
              Human BAC Library) complete sequence
          Length = 154685

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 226    aacgttggtatagggaaagat 246
              |||||||||||||||||||||
Sbjct: 137993 aacgttggtatagggaaagat 137973


>gi|4662612|gb|AC006582.13|AC006582 Pan troglodytes 12cp12 BAC RPCI43-77C18 (Roswell Park Cancer Institute
             Human BAC Library) complete sequence
          Length = 186092

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 226   aacgttggtatagggaaagat 246
             |||||||||||||||||||||
Sbjct: 69106 aacgttggtatagggaaagat 69126


>gi|27688524|ref|XM_220699.1| Rattus norvegicus similar to CG1695-PA [Drosophila melanogaster]
            (LOC303304), mRNA
          Length = 3387

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 161  gccaggatgtttccacaggt 180
            ||||||||||||||||||||
Sbjct: 1794 gccaggatgtttccacaggt 1813


>gi|2088743|gb|AF003142.1| Caenorhabditis elegans cosmid F57C9, complete sequence
          Length = 32048

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 753   tgatcttttgaactcatcta 772
             ||||||||||||||||||||
Sbjct: 15970 tgatcttttgaactcatcta 15989


>gi|25046384|gb|AC084070.57| Mus musculus chromosome 5 clone rp23-268d19 strain C57BL/6J, complete
              sequence
          Length = 347166

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 883    aaaaaagacaagaattatat 902
              ||||||||||||||||||||
Sbjct: 253316 aaaaaagacaagaattatat 253335


>gi|5306232|gb|AC007259.4| Arabidopsis thaliana chromosome I BAC T28P6 genomic sequence, complete
             sequence
          Length = 97146

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     gaatcctattttactagata 25
             ||||||||||||||||||||
Sbjct: 47050 gaatcctattttactagata 47031


>gi|22002106|gb|AC084198.31| Homo sapiens 3 BAC RP11-454H13 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 194955

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 20     tagatacttctagtttttca 39
              ||||||||||||||||||||
Sbjct: 146965 tagatacttctagtttttca 146946


>gi|22330520|ref|NM_105587.2| Arabidopsis thaliana chromosome 1  CHR1v07142002 genomic sequence
          Length = 1845

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 877 gaaaccaaaaaagacaagaa 896
           ||||||||||||||||||||
Sbjct: 345 gaaaccaaaaaagacaagaa 364


>gi|21358750|gb|AC105074.5| Homo sapiens chromosome 18, clone RP11-693M3, complete sequence
          Length = 118724

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 686   aggcaaggagagaaagctgg 705
             ||||||||||||||||||||
Sbjct: 17632 aggcaaggagagaaagctgg 17651


>gi|9558559|gb|AC008180.15| Homo sapiens 3 BAC RP11-292L5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 193035

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 652   agtagatattatttaaaagaagaa 675
             ||||||||||||||||||| ||||
Sbjct: 78767 agtagatattatttaaaagtagaa 78790


>gi|20806323|gb|AC099789.2| Homo sapiens chromosome 1 clone RP11-377K22, complete sequence
          Length = 174162

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 237    agggaaagatcattccatattcgcctta 264
              ||||||||||| ||||||||| ||||||
Sbjct: 126041 agggaaagatctttccatatttgcctta 126068


>gi|2695813|emb|AL008987.1|HS849L7 Human DNA sequence from clone RP5-849L7 on chromosome Xq21, complete
            sequence
          Length = 128169

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 658  tattatttaaaagaagaaga 677
            ||||||||||||||||||||
Sbjct: 5634 tattatttaaaagaagaaga 5615


>gi|3242219|emb|AL021398.1|HS964D12 Human DNA sequence from clone RP5-964D12 on chromosome 1q24-25,
             complete sequence
          Length = 146963

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 815   aacaagaaaaacaagctttg 834
             ||||||||||||||||||||
Sbjct: 61272 aacaagaaaaacaagctttg 61291


>gi|28412549|emb|AL954315.6| Mouse DNA sequence from clone RP23-105O1 on chromosome 2, complete
             sequence
          Length = 167210

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 938   ctttatctgaagaagtacat 957
             ||||||||||||||||||||
Sbjct: 55125 ctttatctgaagaagtacat 55106


>gi|22204284|emb|AL627258.5| Zebrafish DNA sequence from clone RP71-1I8 Contains a CpG island,
            complete sequence
          Length = 138081

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 640  gcaaggttcaatagtagata 659
            ||||||||||||||||||||
Sbjct: 1405 gcaaggttcaatagtagata 1424


>gi|14578190|gb|AC037473.7|AC037473 Homo sapiens chromosome 18, clone CTD-2130O13, complete sequence
          Length = 126976

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 457   ctcgcaaaacctaatatttt 476
             ||||||||||||||||||||
Sbjct: 43316 ctcgcaaaacctaatatttt 43297


>gi|26984919|emb|AL929046.9| Mouse DNA sequence from clone RP23-308N4 on chromosome 2, complete
              sequence
          Length = 181337

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 652    agtagatattatttaaaagaagaa 675
              |||||||||| |||||||||||||
Sbjct: 111214 agtagatattttttaaaagaagaa 111191


>gi|26984766|emb|AL837522.8| Mouse DNA sequence from clone RP23-264L10 on chromosome 4, complete
              sequence
          Length = 128976

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 658    tattatttaaaagaagaaga 677
              ||||||||||||||||||||
Sbjct: 123833 tattatttaaaagaagaaga 123814


>gi|26185908|emb|AL928979.4| Zebrafish DNA sequence from clone DKEY-113G17, complete sequence
          Length = 193205

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 654  tagatattatttaaaagaag 673
            ||||||||||||||||||||
Sbjct: 7743 tagatattatttaaaagaag 7762


>gi|13162535|gb|AC078848.3|AC078848 Homo sapiens BAC clone CTD-2220I23 from 7, complete sequence
          Length = 134778

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 658   tattatttaaaagaagaaga 677
             ||||||||||||||||||||
Sbjct: 81856 tattatttaaaagaagaaga 81837


>gi|456522|emb|X63674.1|FMF1PEP1 F.meningosepticum f1pep1 gene for proline-specific endopeptidase
          Length = 2964

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 218 ctggagaaaacgttggtatagggaaagatcat 249
           ||||||||||||| ||||| || |||||||||
Sbjct: 202 ctggagaaaacgtaggtatcggtaaagatcat 233


>gi|12325073|gb|AC018364.5|AC018364 Arabidopsis thaliana chromosome 1 BAC F23O10 genomic sequence, complete
             sequence
          Length = 93802

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 877   gaaaccaaaaaagacaagaa 896
             ||||||||||||||||||||
Sbjct: 80292 gaaaccaaaaaagacaagaa 80273


>gi|5757471|gb|AC008262.4|AC008262 Genomic sequence for Arabidopsis thaliana BAC F4N2 from chromosome I,
             complete sequence
          Length = 99698

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 877   gaaaccaaaaaagacaagaa 896
             ||||||||||||||||||||
Sbjct: 68471 gaaaccaaaaaagacaagaa 68490


>gi|8894643|emb|AL109942.13|HSJ473J16 Human DNA sequence from clone RP3-473J16 on chromosome 6q25.3-26 Contains
              3' end of the MAP3K4 (mitogen-activated protein kinase
              kinase kinase 4) gene, a novel mRNA, ESTs, STSs and GSSs,
              complete sequence
          Length = 176217

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 296    cttttcatcctaaaagaaaattca 319
              ||||||| ||||||||||||||||
Sbjct: 154326 cttttcaccctaaaagaaaattca 154349


>gi|7159723|emb|AL035705.22|HS758N20 Human DNA sequence from clone RP4-758N20 on chromosome 1p31.3-32.2
              Contains part of the PRKAA2 (protein kinase, AMP-activated,
              alpha 2 catalytic subunit) gene, ESTs, STSs and GSSs,
              complete sequence
          Length = 129618

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 237    agggaaagatcattccatattcgcctta 264
              ||||||||||| ||||||||| ||||||
Sbjct: 106625 agggaaagatctttccatatttgcctta 106598


>gi|14586418|emb|AL591769.3|CNS07EGM Human chromosome 14 DNA sequence BAC R-600G2 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 172856

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 621    tggataccccatagaagatg 640
              ||||||||||||||||||||
Sbjct: 108087 tggataccccatagaagatg 108068


>gi|14161102|emb|AL118559.6|CNS01DRU Human chromosome 14 DNA sequence BAC R-618B21 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 206722

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 36    ttcattccaaaaacatgtgt 55
             ||||||||||||||||||||
Sbjct: 14456 ttcattccaaaaacatgtgt 14437


>gi|13897305|emb|AL391749.4|CNS06C8I Human chromosome 14 DNA sequence BAC R-233L14 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 195007

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 663    tttaaaagaagaagagcgtt 682
              ||||||||||||||||||||
Sbjct: 106265 tttaaaagaagaagagcgtt 106246


>gi|11125392|emb|AL136300.22| Human DNA sequence from clone RP11-10G5 on chromosome 13 Contains a
             zinc finger gene similar to ZNF183, the start of the FARP1
             (FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1
             (chondrocyte-derived)) gene, ESTs, STSs, GSSs and CpG
             islands, complete sequence
          Length = 170916

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 433   aattctatttctagaaaaga 452
             ||||||||||||||||||||
Sbjct: 91615 aattctatttctagaaaaga 91596


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
  or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Mar 20, 2003 10:39 PM
  Number of letters in database: -658,021,059
  Number of sequences in database:  1,707,549
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,239,180
Number of Sequences: 1707549
Number of extensions: 6239180
Number of successful extensions: 35418
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35316
Number of HSP's gapped (non-prelim): 99
length of query: 1116
length of database: 7,931,913,529
effective HSP length: 22
effective length of query: 1094
effective length of database: 7,894,347,451
effective search space: 8636416111394
effective search space used: 8636416111394
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)






 
BLASTX 2.2.5 [Nov-16-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
RID: 1048256796-028617-30432
Query= ORFN:YNL005C MRP7 SGDID:S0004950, Chr XIV from 621310-622425,
reverse complement
         (1116 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           1,376,251 sequences; 442,128,549 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|6324323|ref|NP_014393.1| Mitochondrial ribosomal protein MRP7...   667   0.0  
gi|496715|emb|CAA54379.1| ORF N2007 [Saccharomyces cerevisiae]        665   0.0  
gi|1350787|sp|P48535|RM02_KLULA 60S RIBOSOMAL PROTEIN L2, MITOCH...   342   6e-93
gi|19112965|ref|NP_596173.1| 60s ribosomal protein l2, mitochond...   110   5e-23
gi|23107476|gb|ZP_00093759.1| hypothetical protein [Novosphingob...    89   9e-17
gi|1173005|sp|P46288|RL27_CRYNE 60S RIBOSOMAL PROTEIN L27 >gi|21...    89   1e-16
gi|22967696|gb|ZP_00015288.1| hypothetical protein [Rhodospirill...    87   5e-16
gi|266936|sp|P30155|RK27_TOBAC 50S RIBOSOMAL PROTEIN L27, CHLORO...    87   5e-16
gi|15893086|ref|NP_360800.1| 50S ribosomal protein L27 [Ricketts...    87   6e-16
gi|15237524|ref|NP_198911.1| 50S ribosomal protein L27; protein ...    87   6e-16
gi|21553582|gb|AAM62675.1| 50S ribosomal protein L27 [Arabidopsi...    87   6e-16
gi|18375957|emb|CAD21256.1| related to 60s ribosomal protein L2 ...    86   1e-15
gi|15604586|ref|NP_221104.1| 50S RIBOSOMAL PROTEIN L27 (rpmA) [R...    86   1e-15
gi|11466538|ref|NP_044787.1| ribosomal protein L27 [Reclinomonas...    84   4e-15
gi|23016097|gb|ZP_00055857.1| hypothetical protein [Magnetospiri...    83   9e-15
gi|23000371|gb|ZP_00044304.1| hypothetical protein [Magnetococcu...    82   1e-14
gi|25028826|ref|NP_738880.1| putative 50S ribosomal protein L27 ...    82   2e-14
gi|28897103|ref|NP_796708.1| ribosomal protein L27 [Vibrio parah...    82   2e-14
gi|15644925|ref|NP_207095.1| ribosomal protein L27 (rpl27) [Heli...    82   2e-14
gi|15611352|ref|NP_223003.1| 50S RIBOSOMAL PROTEIN L27 [Helicoba...    82   2e-14
gi|23011813|gb|ZP_00052063.1| hypothetical protein [Magnetospiri...    81   3e-14
gi|15640463|ref|NP_230090.1| ribosomal protein L27 [Vibrio chole...    81   3e-14
gi|15606836|ref|NP_214216.1| ribosomal protein L27 [Aquifex aeol...    81   3e-14
gi|16124573|ref|NP_419137.1| ribosomal protein L27 [Caulobacter ...    81   3e-14
gi|18398258|ref|NP_565398.1| 50S ribosomal protein L27; protein ...    81   3e-14
gi|25411755|pir||A84546 50S ribosomal protein L27 [imported] - A...    81   3e-14
gi|23466649|gb|ZP_00122237.1| hypothetical protein [Haemophilus ...    80   4e-14
gi|13508066|ref|NP_110015.1| ribosomal protein L27 [Mycoplasma p...    80   4e-14
gi|18417600|ref|NP_568310.1| ribosomal protein L27 - like; prote...    80   4e-14
gi|11358772|pir||T49957 ribosomal protein L27-like - Arabidopsis...    80   4e-14
gi|20139372|sp|O65037|RK27_ORYSA 50S ribosomal protein L27, chlo...    80   4e-14
gi|19553561|ref|NP_601563.1| ribosomal protein L27 [Corynebacter...    80   6e-14
gi|25166432|dbj|BAC24622.1| rpmA [Wigglesworthia brevipalpis]          79   1e-13
gi|27364127|ref|NP_759655.1| Ribosomal protein L27 [Vibrio vulni...    79   1e-13
gi|24375150|ref|NP_719193.1| ribosomal protein L27 [Shewanella o...    79   1e-13
gi|24323888|ref|NP_715252.1| Ribosomal protein L27 [Wigglesworth...    79   1e-13
gi|15890033|ref|NP_355714.1| AGR_C_5052p [Agrobacterium tumefaci...    79   1e-13
gi|23029688|ref|ZP_00068006.1| hypothetical protein [Microbulbif...    79   1e-13
gi|15602213|ref|NP_245285.1| RpL27 [Pasteurella multocida] >gi|2...    79   1e-13
gi|23003808|ref|ZP_00047453.1| hypothetical protein [Lactobacill...    78   2e-13
gi|16272819|ref|NP_439040.1| ribosomal protein L27 (rpL27) [Haem...    78   2e-13
gi|16123657|ref|NP_406970.1| 50S ribosomal protein L27 [Yersinia...    78   2e-13
gi|15616992|ref|NP_240205.1| 50S ribosomal protein L27 [Buchnera...    78   3e-13
gi|23502702|ref|NP_698829.1| ribosomal protein L27 [Brucella sui...    77   5e-13
gi|24213551|ref|NP_711032.1| ribosomal protein L27 [Leptospira i...    77   5e-13
gi|23056455|gb|ZP_00082469.1| hypothetical protein [Geobacter me...    77   5e-13
gi|23126411|gb|ZP_00108307.1| hypothetical protein [Nostoc punct...    77   6e-13
gi|15595125|ref|NP_212914.1| ribosomal protein L27 (rpmA) [Borre...    77   6e-13
gi|15803725|ref|NP_289759.1| 50S ribosomal subunit protein L27 [...    76   8e-13
gi|15791483|ref|NP_281306.1| 50S ribosomal protein L27 [Campylob...    76   1e-12
gi|23105568|gb|ZP_00092024.1| hypothetical protein [Azotobacter ...    76   1e-12
gi|13473424|ref|NP_104991.1| ribosomal protein L27 [Mesorhizobiu...    76   1e-12
gi|15966909|ref|NP_387262.1| PROBABLE 50S RIBOSOMAL PROTEIN L27 ...    75   1e-12
gi|23136608|ref|ZP_00118326.1| hypothetical protein [Cytophaga h...    75   1e-12
gi|26553896|ref|NP_757830.1| ribosomal protein L27 [Mycoplasma p...    75   2e-12
gi|16330953|ref|NP_441681.1| 50S ribosomal protein L27 [Synechoc...    75   2e-12
gi|22991074|gb|ZP_00035836.1| hypothetical protein [Enterococcus...    75   2e-12
gi|22955205|gb|ZP_00003006.1| hypothetical protein [Nitrosomonas...    75   2e-12
gi|22957836|gb|ZP_00005523.1| hypothetical protein [Rhodobacter ...    75   2e-12
gi|1333652|dbj|BAA09718.1| ribosomal protein L27 [Arthrobacter sp.]    75   2e-12
gi|28378295|ref|NP_785187.1| ribosomal protein L27 [Lactobacillu...    75   2e-12
gi|19704454|ref|NP_604016.1| LSU ribosomal protein L27P [Fusobac...    74   3e-12
gi|23040290|gb|ZP_00071811.1| hypothetical protein [Trichodesmiu...    74   3e-12
gi|15599763|ref|NP_253257.1| 50S ribosomal protein L27 [Pseudomo...    74   3e-12
gi|21672649|ref|NP_660716.1| ribosomal protein l27 [Buchnera aph...    74   3e-12
gi|27886599|gb|EAA23799.1| LSU ribosomal protein L27P [Fusobacte...    74   3e-12
gi|16762065|ref|NP_457682.1| 50S ribosomal subunit protein L27 [...    74   3e-12
gi|22981705|gb|ZP_00027116.1| hypothetical protein [Ralstonia me...    74   3e-12
gi|12045089|ref|NP_072900.1| ribosomal protein L27 (rpL27) [Myco...    74   3e-12
gi|17227642|ref|NP_484190.1| 50S ribosomal protein L27 [Nostoc s...    74   3e-12
gi|11465676|ref|NP_053820.1| ribosomal protein L27 [Porphyra pur...    74   4e-12
gi|15676241|ref|NP_273373.1| 50S ribosomal protein L27 [Neisseri...    74   4e-12
gi|20139723|sp|Q9FD28|RL27_BURPS 50S ribosomal protein L27 >gi|9...    74   4e-12
gi|7674230|sp|O87885|RL27_LAWIN 50S ribosomal protein L27 >gi|35...    74   5e-12
gi|15827768|ref|NP_302031.1| 50S ribosomal protein L27 [Mycobact...    74   5e-12
gi|23465845|ref|NP_696448.1| 50S ribosomal protein L27 [Bifidoba...    74   5e-12
gi|15609578|ref|NP_216957.1| rpmA [Mycobacterium tuberculosis H3...    74   5e-12
gi|23061351|ref|ZP_00086201.1| hypothetical protein [Pseudomonas...    74   5e-12
gi|23123165|gb|ZP_00105300.1| hypothetical protein [Prochlorococ...    73   7e-12
gi|23133159|ref|ZP_00114933.1| hypothetical protein [Synechococc...    73   7e-12
gi|23099499|ref|NP_692965.1| 50S ribosomal protein L27 [Oceanoba...    73   7e-12
gi|20139482|sp|Q8YJ84|RL27_BRUME 50S ribosomal protein L27             73   7e-12
gi|5712724|gb|AAD47626.1| 50S ribosomal protein homolog [Pseudom...    73   7e-12
gi|23470021|ref|ZP_00125355.1| hypothetical protein [Pseudomonas...    73   7e-12
gi|26987425|ref|NP_742850.1| ribosomal protein L27 [Pseudomonas ...    73   7e-12
gi|23023588|ref|ZP_00062822.1| hypothetical protein [Leuconostoc...    73   9e-12
gi|21402489|ref|NP_658474.1| Ribosomal_L27, Ribosomal L27 protei...    73   9e-12
gi|11467484|ref|NP_043630.1| ribosomal protein L27 [Odontella si...    72   1e-11
gi|22962156|gb|ZP_00009762.1| hypothetical protein [Rhodopseudom...    72   1e-11
gi|13357769|ref|NP_078043.1| ribosomal protein L27 [Ureaplasma u...    72   1e-11
gi|16800643|ref|NP_470911.1| ribosomal protein L27 [Listeria inn...    72   1e-11
gi|16079846|ref|NP_390672.1| ribosomal protein L27 (BL24) [Bacil...    72   1e-11
gi|7674283|sp|Q9Z3H6|RL27_SYNP7 50S ribosomal protein L27 >gi|11...    72   2e-11
gi|17547540|ref|NP_520942.1| PROBABLE 50S RIBOSOMAL SUBUNIT PROT...    72   2e-11
gi|27468246|ref|NP_764883.1| 50S ribosomal protein L27 [Staphylo...    72   2e-11
gi|20807396|ref|NP_622567.1| Ribosomal protein L27 [Thermoanaero...    72   2e-11
gi|28493439|ref|NP_787600.1| 50S ribosomal protein L27 [Trophery...    72   2e-11
gi|28211678|ref|NP_782622.1| LSU ribosomal protein L27P [Clostri...    72   2e-11
gi|15924635|ref|NP_372169.1| 50S ribosomal protei L27 [Staphyloc...    71   3e-11
gi|15927225|ref|NP_374758.1| 50S ribosomal protei L27 (BL30) [St...    71   3e-11

ALIGNMENTS
>gi|6324323|ref|NP_014393.1| Mitochondrial ribosomal protein MRP7 (YmL2) (E. coli L27); Mrp7p
            [Saccharomyces cerevisiae]
 gi|133120|sp|P12687|RM02_YEAST 60S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL PRECURSOR (YML2) (YMR6)
 gi|2144785|pir||R6BYM7 ribosomal protein YmL2 precursor, mitochondrial - yeast
            (Saccharomyces cerevisiae)
 gi|171984|gb|AAA34794.1| 40 kd ribosomal protein large subunit precursor
 gi|1301820|emb|CAA95864.1| ORF YNL005c [Saccharomyces cerevisiae]
          Length = 371

 Score =  667 bits (1721), Expect = 0.0
 Identities = 342/371 (92%), Positives = 342/371 (92%)
 Frame = +1

Query: 1    MWNPILLDTSSFSFQKHVSGVFLQVRNATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTG 180
            MWNPILLDTSSFSFQKHVSGVFLQVRNATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTG
Sbjct: 1    MWNPILLDTSSFSFQKHVSGVFLQVRNATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTG 60

Query: 181  EIIMRQRGTKFYPGENVGIGKDHSIFALEPGVVRYYLDPFHPKRKFIGVALRRDLKLPSP 360
            EIIMRQRGTKFYPGENVGIGKDHSIFALEPGVVRYYLDPFHPKRKFIGVALRRDLKLPSP
Sbjct: 61   EIIMRQRGTKFYPGENVGIGKDHSIFALEPGVVRYYLDPFHPKRKFIGVALRRDLKLPSP 120

Query: 361  HFEPTVRRFGRFELTNKRAAYKEENSISRKDYLAKPNILKQLEVRESKRKELQDKLSKVL 540
            HFEPTVRRFGRFELTNKRAAYKEENSISRKDYLAKPNILKQLEVRESKRKELQDKLSKVL
Sbjct: 121  HFEPTVRRFGRFELTNKRAAYKEENSISRKDYLAKPNILKQLEVRESKRKELQDKLSKVL 180

Query: 541  RDELKLDIKDIELATSYLIRVRASLKNGYPIEDARFNSRYYXXXXXXXXXXXXSWTNEKL 720
            RDELKLDIKDIELATSYLIRVRASLKNGYPIEDARFNSRYY            SWTNEKL
Sbjct: 181  RDELKLDIKDIELATSYLIRVRASLKNGYPIEDARFNSRYYLKEEERLKARRESWTNEKL 240

Query: 721  SESLSKIDECSDLLNSSTSFNNKLELHQYISXXXXXXXXXXXXXXXXXSQHLETKKDKNY 900
            SESLSKIDECSDLLNSSTSFNNKLELHQYIS                 SQHLETKKDKNY
Sbjct: 241  SESLSKIDECSDLLNSSTSFNNKLELHQYISEQEKQALKAKLLEDLEKSQHLETKKDKNY 300

Query: 901  IKALFKDACNFLTLSEEVHLRRKYLKSVFPETDSTVETKSGKKSIVSRRFDYTKNKVEVI 1080
            IKALFKDACNFLTLSEEVHLRRKYLKSVFPETDSTVETKSGKKSIVSRRFDYTKNKVEVI
Sbjct: 301  IKALFKDACNFLTLSEEVHLRRKYLKSVFPETDSTVETKSGKKSIVSRRFDYTKNKVEVI 360

Query: 1081 ARSRRAFLSKL 1113
            ARSRRAFLSKL
Sbjct: 361  ARSRRAFLSKL 371


>gi|496715|emb|CAA54379.1| ORF N2007 [Saccharomyces cerevisiae]
          Length = 371

 Score =  665 bits (1715), Expect = 0.0
 Identities = 341/371 (91%), Positives = 341/371 (91%)
 Frame = +1

Query: 1    MWNPILLDTSSFSFQKHVSGVFLQVRNATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTG 180
            MWNPILLDTSSFSFQKHVSGVFLQVRNATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTG
Sbjct: 1    MWNPILLDTSSFSFQKHVSGVFLQVRNATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTG 60

Query: 181  EIIMRQRGTKFYPGENVGIGKDHSIFALEPGVVRYYLDPFHPKRKFIGVALRRDLKLPSP 360
            EIIMRQRGTKFYPGENVGIGKDHSIFALEPGVVRYYLDPFHPKRKFIGVALRRDLKLPSP
Sbjct: 61   EIIMRQRGTKFYPGENVGIGKDHSIFALEPGVVRYYLDPFHPKRKFIGVALRRDLKLPSP 120

Query: 361  HFEPTVRRFGRFELTNKRAAYKEENSISRKDYLAKPNILKQLEVRESKRKELQDKLSKVL 540
            HFEPTVRRFGRFELTNKRAAYKEENSISRKDYLAKPNILKQLEVRESKRKELQDKLSKVL
Sbjct: 121  HFEPTVRRFGRFELTNKRAAYKEENSISRKDYLAKPNILKQLEVRESKRKELQDKLSKVL 180

Query: 541  RDELKLDIKDIELATSYLIRVRASLKNGYPIEDARFNSRYYXXXXXXXXXXXXSWTNEKL 720
            RDELKLDIKDIELATSYLIRVRASLKNGYPIEDARFNSRYY            SWTNEKL
Sbjct: 181  RDELKLDIKDIELATSYLIRVRASLKNGYPIEDARFNSRYYLKEEERLKARRESWTNEKL 240

Query: 721  SESLSKIDECSDLLNSSTSFNNKLELHQYISXXXXXXXXXXXXXXXXXSQHLETKKDKNY 900
            SESLSKIDECSDLLNSSTSFNNKLELHQYIS                 SQHLETKKDKNY
Sbjct: 241  SESLSKIDECSDLLNSSTSFNNKLELHQYISEQEKQALKAKLLEDLEKSQHLETKKDKNY 300

Query: 901  IKALFKDACNFLTLSEEVHLRRKYLKSVFPETDSTVETKSGKKSIVSRRFDYTKNKVEVI 1080
            IKALFKDACNFLTLSEEVHLRRKYLKSVFPETDSTVETKSGKKSIVSRR DYTKNKVEVI
Sbjct: 301  IKALFKDACNFLTLSEEVHLRRKYLKSVFPETDSTVETKSGKKSIVSRRLDYTKNKVEVI 360

Query: 1081 ARSRRAFLSKL 1113
            ARSRRAFLSKL
Sbjct: 361  ARSRRAFLSKL 371


>gi|1350787|sp|P48535|RM02_KLULA 60S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL PRECURSOR
 gi|1022902|gb|AAA79723.1| 50S subunit ribosomal protein
          Length = 364

 Score =  342 bits (877), Expect = 6e-93
 Identities = 189/365 (51%), Positives = 241/365 (66%), Gaps = 4/365 (1%)
 Frame = +1

Query: 31   SFSFQKHVSGVFLQVRNATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTK 210
            S S+Q+    V  QVR ATKRAAGSRTSMKDSAGRRLGPKKYEGQ    GEIIMRQRGTK
Sbjct: 3    SSSWQQVPKFVVQQVRTATKRAAGSRTSMKDSAGRRLGPKKYEGQATQVGEIIMRQRGTK 62

Query: 211  FYPGENVGIGKDHSIFALEPGVVRYYLDPFHPKRKFIGVALRRDLKLPSPHFEPTVRRFG 390
            FYPGENVGIGKDH++FALEPG VRYYLDPFHP +KFIGV+L +D+KLP PHFEP +RRFG
Sbjct: 63   FYPGENVGIGKDHTLFALEPGYVRYYLDPFHPGKKFIGVSLYKDVKLPLPHFEPRLRRFG 122

Query: 391  RFELTNKRAAYKEENSISRKDYLAKPNILKQLEVRESKRKELQDKLSKVLRD-ELKLDIK 567
            +  + ++  A  EEN++ RK YL K  ++K+ + RE KR+EL+ + SK++ D +++LD +
Sbjct: 123  KAIIEDEEKAIAEENALPRKIYLLKDELIKKQQEREIKREELKAEYSKIISDLKVELDQQ 182

Query: 568  DIELATSYLIRVRASLKNGYPIEDARFNSRYYXXXXXXXXXXXXSWTNEKLSESLSKIDE 747
            ++  A  YL+R R  LKNG+   DARFNS YY            +    KL + L+ + +
Sbjct: 183  ELAFALPYLLRWRTCLKNGFNESDARFNSYYY--LEQELKLKMRNQEKSKLDDKLTLLKQ 240

Query: 748  CSDLLNSSTSFNNKLELHQYISXXXXXXXXXXXXXXXXXSQHLETKKDKNYIKALFKDAC 927
             S  LN S SFNNKLEL +YIS                    ++ K  K  + A F D  
Sbjct: 241  VSTKLNESLSFNNKLELTKYISPEEKNTLKTQLITDLKAID-IKDKNSKKQVLAKFTDRK 299

Query: 928  NFLTLSEEVHLRRKYLKSVFPETD---STVETKSGKKSIVSRRFDYTKNKVEVIARSRRA 1098
            NFLTLSEEV LRRK+LK V PET+        K  KK++ +RR++Y +N ++VI R +  
Sbjct: 300  NFLTLSEEVRLRRKFLKPVKPETELKKLEEPLKPSKKNLTTRRYNYEQNTIDVITRPKTD 359

Query: 1099 FLSKL 1113
            FLSKL
Sbjct: 360  FLSKL 364


>gi|19112965|ref|NP_596173.1| 60s ribosomal protein l2, mitochondrial precursor
           [Schizosaccharomyces pombe]
 gi|12044482|emb|CAC19755.1| 60s ribosomal protein l2, mitochondrial precursor
           [Schizosaccharomyces pombe]
          Length = 153

 Score =  110 bits (274), Expect = 5e-23
 Identities = 53/113 (46%), Positives = 77/113 (68%), Gaps = 2/113 (1%)
 Frame = +1

Query: 64  FLQVRNATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGK 243
           F  +R +TK   GS  +  DSAGRRLG K+ E Q V  GEI++RQRGTKF+PG+N G+GK
Sbjct: 31  FPPIRTSTKHGGGSSKNTGDSAGRRLGIKRSENQFVRAGEILIRQRGTKFHPGDNTGLGK 90

Query: 244 DHSIFALEPGVVRYY-LD-PFHPKRKFIGVALRRDLKLPSPHFEPTVRRFGRF 396
           DH+I++L  G V+++ +D     +RK++GV   ++  LP P  EPT+RR  ++
Sbjct: 91  DHTIYSLVSGYVKFFQMDVSLRKRRKYVGVVFDKETTLPRPKDEPTIRRVNKY 143


>gi|23107476|gb|ZP_00093759.1| hypothetical protein [Novosphingobium aromaticivorans]
          Length = 89

 Score = 89.4 bits (220), Expect = 9e-17
 Identities = 45/82 (54%), Positives = 59/82 (71%)
 Frame = +1

Query: 82  ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSIFA 261
           A K+A GS  + +DSAGRRLG KK+ GQ+V  G II+RQRGT+ YPG NVG+GKDH++FA
Sbjct: 2   AHKKAGGSSRNGRDSAGRRLGVKKFGGQEVVGGNIIIRQRGTRVYPGANVGMGKDHTLFA 61

Query: 262 LEPGVVRYYLDPFHPKRKFIGV 327
           L  G VR++       RK++ V
Sbjct: 62  LAEGRVRFHAGKL--GRKYVSV 81


>gi|1173005|sp|P46288|RL27_CRYNE 60S RIBOSOMAL PROTEIN L27
 gi|2133352|pir||JC4568 ribosomal protein L27 precursor, mitochondrial - fungus
           (Filobasidium floriforme)
 gi|642605|gb|AAA97429.1| ribosomal protein L27
          Length = 183

 Score = 89.0 bits (219), Expect = 1e-16
 Identities = 55/132 (41%), Positives = 75/132 (56%), Gaps = 22/132 (16%)
 Frame = +1

Query: 67  LQVRNATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKD 246
           +QVR A+K A G   + ++SAGRRLG K+Y  Q V+ G II+RQRG  F+PG+NV +GKD
Sbjct: 30  IQVRWASKAAGGKSKNGRESAGRRLGVKRYGDQYVTPGTIIVRQRGANFHPGQNVAVGKD 89

Query: 247 HSIFALEPGVVRYYLD---------PFHPK-------------RKFIGVALRRDLKLPSP 360
            +I+AL+PG V++Y           P  P              R+F+G+A  R+ KLP  
Sbjct: 90  FTIYALQPGYVKFYQHHLPYPHLSRPDQPGPQNVPSVKRPRQFRQFVGIARDREDKLPRD 149

Query: 361 HFEPTVRRFGRF 396
             E  V R  RF
Sbjct: 150 --ERAVGRERRF 159


>gi|22967696|gb|ZP_00015288.1| hypothetical protein [Rhodospirillum rubrum]
          Length = 85

 Score = 87.0 bits (214), Expect = 5e-16
 Identities = 40/69 (57%), Positives = 54/69 (78%)
 Frame = +1

Query: 82  ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSIFA 261
           A K+A GS  + +DS GRRLG KK+ G+ V +G II+RQRGTK++PG NVG+GKDH+IFA
Sbjct: 2   AHKKAGGSSRNGRDSEGRRLGVKKFGGEIVVSGNIILRQRGTKYHPGANVGLGKDHTIFA 61

Query: 262 LEPGVVRYY 288
             PG V+++
Sbjct: 62  TTPGNVKFH 70


>gi|266936|sp|P30155|RK27_TOBAC 50S RIBOSOMAL PROTEIN L27, CHLOROPLAST PRECURSOR (CL27)
 gi|282960|pir||A42840 ribosomal protein L27 precursor, chloroplast [similarity] - common
           tobacco
 gi|170306|gb|AAA34104.1| ribosomal protein L27
 gi|170326|gb|AAA34115.1| ribosomal protein L27
          Length = 179

 Score = 87.0 bits (214), Expect = 5e-16
 Identities = 52/125 (41%), Positives = 77/125 (61%)
 Frame = +1

Query: 67  LQVRNATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKD 246
           L + +A K+ AGS  + +DS G+RLG K +  Q    G II+RQRGTKF+PG+NVG+GKD
Sbjct: 47  LTIESAHKKGAGSTKNGRDSPGQRLGVKIFGDQVAKPGSIIVRQRGTKFHPGKNVGLGKD 106

Query: 247 HSIFALEPGVVRYYLDPFHPKRKFIGVALRRDLKLPSPHFEPTVRRFGRFELTNKRAAYK 426
           H+IF+L  G+V++  + F P RK I V   R+++  +P+     R+   F L  +R   +
Sbjct: 107 HTIFSLIDGLVKF--EKFGPDRKKISV-YPREVQPENPNSYRN-RKRESFRLQRERRKAR 162

Query: 427 EENSI 441
            E  I
Sbjct: 163 REGVI 167


>gi|15893086|ref|NP_360800.1| 50S ribosomal protein L27 [Rickettsia conorii]
 gi|20139540|sp|Q92GG0|RL27_RICCN 50S ribosomal protein L27
 gi|25295476|pir||C97845 50S ribosomal protein L27 [imported] - Rickettsia conorii  (strain
           Malish 7)
 gi|15620290|gb|AAL03701.1| 50S ribosomal protein L27 [Rickettsia conorii]
 gi|28262623|gb|EAA26127.1| 50S ribosomal protein L27 [Rickettsia sibirica]
          Length = 86

 Score = 86.7 bits (213), Expect = 6e-16
 Identities = 43/68 (63%), Positives = 52/68 (76%)
 Frame = +1

Query: 82  ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSIFA 261
           ATK+A GS  + +DSAGRRLG KK +GQ V  G II+RQRGTK +PG NVG+GKDH+IFA
Sbjct: 2   ATKKAGGSSRNGRDSAGRRLGVKKADGQYVIPGNIIVRQRGTKIHPGTNVGLGKDHTIFA 61

Query: 262 LEPGVVRY 285
           L  G V +
Sbjct: 62  LIEGRVEF 69


>gi|15237524|ref|NP_198911.1| 50S ribosomal protein L27; protein id: At5g40950.1, supported by
           cDNA: 152076., supported by cDNA: gi_15028248
           [Arabidopsis thaliana]
 gi|20139726|sp|Q9FLN4|RK27_ARATH 50S ribosomal protein L27, chloroplast precursor
 gi|9759141|dbj|BAB09697.1| 50S ribosomal protein L27 [Arabidopsis thaliana]
 gi|15028249|gb|AAK76713.1| putative 50S ribosomal protein L27 [Arabidopsis thaliana]
 gi|21436345|gb|AAM51342.1| putative 50S ribosomal protein L27 [Arabidopsis thaliana]
          Length = 198

 Score = 86.7 bits (213), Expect = 6e-16
 Identities = 52/123 (42%), Positives = 72/123 (58%)
 Frame = +1

Query: 67  LQVRNATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKD 246
           L + +A K+ AGS  + +DS G+RLG K Y  Q    G II+RQRGTKF+ G+NVGIGKD
Sbjct: 54  LTIESAHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKD 113

Query: 247 HSIFALEPGVVRYYLDPFHPKRKFIGVALRRDLKLPSPHFEPTVRRFGRFELTNKRAAYK 426
           H+IF+L  G+V++  + F P RK I V  R    +P        R+   F L  ++   +
Sbjct: 114 HTIFSLIDGLVKF--EKFGPDRKKISVYPRE--IVPENPNSYRARKRENFRLQREKKKAR 169

Query: 427 EEN 435
            EN
Sbjct: 170 REN 172


>gi|21553582|gb|AAM62675.1| 50S ribosomal protein L27 [Arabidopsis thaliana]
          Length = 196

 Score = 86.7 bits (213), Expect = 6e-16
 Identities = 52/123 (42%), Positives = 72/123 (58%)
 Frame = +1

Query: 67  LQVRNATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKD 246
           L + +A K+ AGS  + +DS G+RLG K Y  Q    G II+RQRGTKF+ G+NVGIGKD
Sbjct: 52  LTIESAHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKD 111

Query: 247 HSIFALEPGVVRYYLDPFHPKRKFIGVALRRDLKLPSPHFEPTVRRFGRFELTNKRAAYK 426
           H+IF+L  G+V++  + F P RK I V  R    +P        R+   F L  ++   +
Sbjct: 112 HTIFSLIDGLVKF--EKFGPDRKKISVYPRE--IVPENPNSYRARKRENFRLQREKKKAR 167

Query: 427 EEN 435
            EN
Sbjct: 168 REN 170


>gi|18375957|emb|CAD21256.1| related to 60s ribosomal protein L2 (mitochondrial) [Neurospora
           crassa]
 gi|28922526|gb|EAA31755.1| hypothetical protein [Neurospora crassa]
          Length = 447

 Score = 85.9 bits (211), Expect = 1e-15
 Identities = 49/114 (42%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
 Frame = +1

Query: 76  RNATKRAAGS-RTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHS 252
           R A+ +A G+ R   K +  ++LG KK   Q V  G II +QRGT ++PGEN  +G+DH+
Sbjct: 59  RYASVKAQGAYRLKPKRTIPKKLGAKKTGDQYVIPGNIIYKQRGTLWHPGENTIMGRDHT 118

Query: 253 IFALEPGVVRYYLDP-FHPKRKFIGVALRRDLKLPSPHFEPTVRRFGRFELTNK 411
           I A   G V+YY DP  HP R++IGV   R+ KLP P   P  R+ G   +  K
Sbjct: 119 IHAAVAGYVKYYRDPQLHPDRQYIGVVFNRNDKLPYPKDAPRKRKLGLVAVPRK 172


>gi|15604586|ref|NP_221104.1| 50S RIBOSOMAL PROTEIN L27 (rpmA) [Rickettsia prowazekii]
 gi|6225988|sp|Q9ZCI8|RL27_RICPR 50S ribosomal protein L27
 gi|7441046|pir||D71635 ribosomal protein L27 - Rickettsia prowazekii
 gi|3861281|emb|CAA15180.1| 50S RIBOSOMAL PROTEIN L27 (rpmA) [Rickettsia prowazekii]
          Length = 86

 Score = 85.5 bits (210), Expect = 1e-15
 Identities = 43/74 (58%), Positives = 53/74 (71%)
 Frame = +1

Query: 82  ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSIFA 261
           ATK+A GS  + +DSAGRRLG KK +GQ V  G II+RQRGTK +PG NVG+GKDH+IF+
Sbjct: 2   ATKKAGGSSRNGRDSAGRRLGVKKSDGQYVIPGNIIVRQRGTKIHPGINVGLGKDHTIFS 61

Query: 262 LEPGVVRYYLDPFH 303
           L  G V +     H
Sbjct: 62  LIEGRVEFLTKQSH 75


>gi|11466538|ref|NP_044787.1| ribosomal protein L27 [Reclinomonas americana]
 gi|20139368|sp|O21275|RM27_RECAM Mitochondrial 60S ribosomal protein L27
 gi|7441044|pir||S78169 ribosomal protein L27 - Reclinomonas americana (ATCC 50394)
           mitochondrion
 gi|2258368|gb|AAD11902.1| ribosomal protein L27 [Reclinomonas americana]
          Length = 81

 Score = 84.0 bits (206), Expect = 4e-15
 Identities = 39/71 (54%), Positives = 53/71 (74%)
 Frame = +1

Query: 82  ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSIFA 261
           ATK++ GS  + +DS GRRLG K + G+  + G II+RQRGTK  P +NVG+G+DH+IFA
Sbjct: 2   ATKKSGGSSRNGRDSKGRRLGVKLFGGEYATIGSIIVRQRGTKILPYKNVGLGRDHTIFA 61

Query: 262 LEPGVVRYYLD 294
           L+ G+V YY D
Sbjct: 62  LKEGIVSYYKD 72


>gi|23016097|gb|ZP_00055857.1| hypothetical protein [Magnetospirillum magnetotacticum]
          Length = 89

 Score = 82.8 bits (203), Expect = 9e-15
 Identities = 40/68 (58%), Positives = 51/68 (75%)
 Frame = +1

Query: 82  ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSIFA 261
           A K+A GS  + +DSAG+RLG KK+ G+ V  G II+RQRGTKFYPG NVG+GKDH++FA
Sbjct: 2   AHKKAGGSSRNGRDSAGQRLGVKKFGGELVIPGNIIVRQRGTKFYPGTNVGMGKDHTLFA 61

Query: 262 LEPGVVRY 285
              G V +
Sbjct: 62  TAMGKVSF 69


>gi|23000371|gb|ZP_00044304.1| hypothetical protein [Magnetococcus sp. MC-1]
          Length = 86

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 39/68 (57%), Positives = 51/68 (75%)
 Frame = +1

Query: 82  ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSIFA 261
           A K+A GS  + +DS GRRLG KKY G++V  G I++RQRGTK +PG  VG+GKDH++FA
Sbjct: 2   AHKKAGGSSRNGRDSEGRRLGVKKYGGENVIPGNILVRQRGTKMWPGVGVGMGKDHTLFA 61

Query: 262 LEPGVVRY 285
           LE G V +
Sbjct: 62  LEEGRVAF 69


>gi|25028826|ref|NP_738880.1| putative 50S ribosomal protein L27 [Corynebacterium efficiens
           YS-314]
 gi|23494112|dbj|BAC19080.1| putative 50S ribosomal protein L27 [Corynebacterium efficiens
           YS-314]
          Length = 88

 Score = 81.6 bits (200), Expect = 2e-14
 Identities = 37/68 (54%), Positives = 53/68 (77%)
 Frame = +1

Query: 82  ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSIFA 261
           ATK+ A S ++ +DS  +RLG K++ GQ V+ GEI++RQRGTKF+PGENVG G D ++FA
Sbjct: 2   ATKKGASSSSNGRDSEAKRLGVKRFGGQQVNAGEILVRQRGTKFHPGENVGRGGDDTLFA 61

Query: 262 LEPGVVRY 285
           L+ G V++
Sbjct: 62  LKTGAVQF 69


>gi|28897103|ref|NP_796708.1| ribosomal protein L27 [Vibrio parahaemolyticus RIMD 2210633]
 gi|28805312|dbj|BAC58592.1| ribosomal protein L27 [Vibrio parahaemolyticus]
          Length = 85

 Score = 81.6 bits (200), Expect = 2e-14
 Identities = 42/83 (50%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
 Frame = +1

Query: 82  ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSIFA 261
           A K+A GS  + +DS  +RLG K++ G+ V  G II+RQRGTKF+ G NVGIGKDH++FA
Sbjct: 2   AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGNNVGIGKDHTLFA 61

Query: 262 LEPGVVRYYLDPFHPK-RKFIGV 327
           L  G V++ +    PK RKF+ +
Sbjct: 62  LTEGKVKFEVK--GPKNRKFVSI 82


>gi|15644925|ref|NP_207095.1| ribosomal protein L27 (rpl27) [Helicobacter pylori 26695]
 gi|2500313|sp|P56050|RL27_HELPY 50S ribosomal protein L27
 gi|7441043|pir||A64557 ribosomal protein L27 - Helicobacter pylori (strain 26695)
 gi|2313395|gb|AAD07366.1| ribosomal protein L27 (rpl27) [Helicobacter pylori 26695]
          Length = 88

 Score = 81.6 bits (200), Expect = 2e-14
 Identities = 38/68 (55%), Positives = 51/68 (75%)
 Frame = +1

Query: 82  ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSIFA 261
           A K+  GS  + +DSAGRRLG KK+  + V  G II+RQRGTK +PG NVG+GKDH+++A
Sbjct: 2   AHKKGQGSTQNNRDSAGRRLGVKKFGSEFVRAGNIIVRQRGTKMHPGNNVGMGKDHTLYA 61

Query: 262 LEPGVVRY 285
           L  GVV++
Sbjct: 62  LIDGVVKF 69


>gi|15611352|ref|NP_223003.1| 50S RIBOSOMAL PROTEIN L27 [Helicobacter pylori J99]
 gi|7674256|sp|Q9ZMD8|RL27_HELPJ 50S ribosomal protein L27
 gi|7441048|pir||E71951 ribosomal protein L27 - Helicobacter pylori (strain J99)
 gi|4154807|gb|AAD05863.1| 50S RIBOSOMAL PROTEIN L27 [Helicobacter pylori J99]
          Length = 88

 Score = 81.6 bits (200), Expect = 2e-14
 Identities = 38/68 (55%), Positives = 51/68 (75%)
 Frame = +1

Query: 82  ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSIFA 261
           A K+  GS  + +DSAGRRLG KK+  + V  G II+RQRGTK +PG NVG+GKDH+++A
Sbjct: 2   AHKKGQGSTQNNRDSAGRRLGVKKFGSEFVRAGNIIVRQRGTKIHPGNNVGMGKDHTLYA 61

Query: 262 LEPGVVRY 285
           L  GVV++
Sbjct: 62  LIDGVVKF 69


>gi|23011813|gb|ZP_00052063.1| hypothetical protein [Magnetospirillum magnetotacticum]
          Length = 88

 Score = 81.3 bits (199), Expect = 3e-14
 Identities = 38/68 (55%), Positives = 52/68 (76%)
 Frame = +1

Query: 82  ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSIFA 261
           A K+A GS  + +DSAG+RLG KK+  + V  G II+RQRGTK++PG NVG+GKDH++FA
Sbjct: 2   AHKKAGGSSRNGRDSAGKRLGVKKFGSESVIPGNIIVRQRGTKWHPGTNVGMGKDHTLFA 61

Query: 262 LEPGVVRY 285
           L  G V++
Sbjct: 62  LVEGKVQF 69


>gi|15640463|ref|NP_230090.1| ribosomal protein L27 [Vibrio cholerae]
 gi|20139785|sp|Q9KUS9|RL27_VIBCH 50S ribosomal protein L27
 gi|11356083|pir||C82322 ribosomal protein L27 VC0436 [imported] - Vibrio cholerae  (strain
           N16961 serogroup O1)
 gi|9654860|gb|AAF93609.1| ribosomal protein L27 [Vibrio cholerae]
          Length = 86

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 40/82 (48%), Positives = 57/82 (69%)
 Frame = +1

Query: 82  ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSIFA 261
           A K+A GS  + +DS  +RLG K++ G+ V  G II+RQRGTKF+ G NVGIGKDH++FA
Sbjct: 2   AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGTNVGIGKDHTLFA 61

Query: 262 LEPGVVRYYLDPFHPKRKFIGV 327
           L  G V++ +   +  RKF+ +
Sbjct: 62  LSDGKVKFEVKGPN-NRKFVSI 82


>gi|15606836|ref|NP_214216.1| ribosomal protein L27 [Aquifex aeolicus]
 gi|7674224|sp|O67650|RL27_AQUAE 50S ribosomal protein L27
 gi|7441038|pir||H70452 ribosomal protein L27 - Aquifex aeolicus
 gi|2984075|gb|AAC07615.1| ribosomal protein L27 [Aquifex aeolicus VF5]
          Length = 98

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 39/82 (47%), Positives = 57/82 (69%)
 Frame = +1

Query: 82  ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSIFA 261
           A+K + GS  + +DS  +RLG K+Y+GQ V  G II+RQRGT+ YPG+NVG+G D+++FA
Sbjct: 2   ASKASGGSTRNGRDSISKRLGVKRYDGQFVKAGNIIVRQRGTRIYPGKNVGMGSDYTLFA 61

Query: 262 LEPGVVRYYLDPFHPKRKFIGV 327
           L+ G V +       K+KF+ V
Sbjct: 62  LKDGYVYF---ETRRKKKFVSV 80


>gi|16124573|ref|NP_419137.1| ribosomal protein L27 [Caulobacter crescentus CB15]
 gi|20139682|sp|Q9ABB3|RL27_CAUCR 50S ribosomal protein L27
 gi|25295479|pir||E87288 ribosomal protein L27 [imported] - Caulobacter crescentus
 gi|13421463|gb|AAK22305.1| ribosomal protein L27 [Caulobacter crescentus CB15]
          Length = 89

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 37/68 (54%), Positives = 50/68 (73%)
 Frame = +1

Query: 82  ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSIFA 261
           A K++ GS ++ +DS  +RLG KK+ G+ V  G I++RQRGTKFYPG  VGIGKDH++FA
Sbjct: 2   AHKKSGGSSSNGRDSESKRLGVKKFGGEKVLAGNILVRQRGTKFYPGSGVGIGKDHTLFA 61

Query: 262 LEPGVVRY 285
           L  G V +
Sbjct: 62  LVQGAVGF 69


>gi|18398258|ref|NP_565398.1| 50S ribosomal protein L27; protein id: At2g16930.1, supported by
           cDNA: 17067., supported by cDNA: gi_18958057
           [Arabidopsis thaliana]
 gi|20197282|gb|AAC64229.2| 50S ribosomal protein L27 [Arabidopsis thaliana]
 gi|26452172|dbj|BAC43174.1| putative 50S ribosomal protein L27 [Arabidopsis thaliana]
 gi|28372840|gb|AAO39902.1| At2g16930 [Arabidopsis thaliana]
          Length = 154

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 41/78 (52%), Positives = 58/78 (74%), Gaps = 1/78 (1%)
 Frame = +1

Query: 55  SGVFLQVRN-ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENV 231
           SG+ L ++  ATK+ AGS  + +DS  + LG KK+ G+ V  G II+RQRGT+F+PG+ V
Sbjct: 37  SGLSLVLKRWATKKTAGSTKNGRDSNPKFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYV 96

Query: 232 GIGKDHSIFALEPGVVRY 285
           GIGKDH++FAL+ G VR+
Sbjct: 97  GIGKDHTLFALKEGRVRF 114


>gi|25411755|pir||A84546 50S ribosomal protein L27 [imported] - Arabidopsis thaliana
          Length = 147

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 41/78 (52%), Positives = 58/78 (74%), Gaps = 1/78 (1%)
 Frame = +1

Query: 55  SGVFLQVRN-ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENV 231
           SG+ L ++  ATK+ AGS  + +DS  + LG KK+ G+ V  G II+RQRGT+F+PG+ V
Sbjct: 30  SGLSLVLKRWATKKTAGSTKNGRDSNPKFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYV 89

Query: 232 GIGKDHSIFALEPGVVRY 285
           GIGKDH++FAL+ G VR+
Sbjct: 90  GIGKDHTLFALKEGRVRF 107


>gi|23466649|gb|ZP_00122237.1| hypothetical protein [Haemophilus somnus 129PT]
          Length = 85

 Score = 80.5 bits (197), Expect = 4e-14
 Identities = 39/82 (47%), Positives = 56/82 (68%)
 Frame = +1

Query: 82  ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSIFA 261
           ATK+A GS  + +DS  +RLG K++ G+ V  G II+RQRGTKF+ G NVG+GKDH++FA
Sbjct: 2   ATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGSNVGMGKDHTLFA 61

Query: 262 LEPGVVRYYLDPFHPKRKFIGV 327
              G V++ +      RK++ V
Sbjct: 62  TADGKVKFEVKG-EKSRKYVSV 82


>gi|13508066|ref|NP_110015.1| ribosomal protein L27 [Mycoplasma pneumoniae]
 gi|2500314|sp|P75458|RL27_MYCPN 50S ribosomal protein L27
 gi|2146605|pir||S73835 ribosomal protein L27 - Mycoplasma pneumoniae (strain ATCC 29342)
 gi|1674203|gb|AAB96157.1| ribosomal protein L27 [Mycoplasma pneumoniae]
          Length = 104

 Score = 80.5 bits (197), Expect = 4e-14
 Identities = 39/77 (50%), Positives = 54/77 (70%)
 Frame = +1

Query: 82  ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSIFA 261
           A+K+  GS  + +DS  +RLG KK +GQ + TG+II RQRGT+ YPG NVG+G D ++FA
Sbjct: 16  ASKKGVGSTKNGRDSHAKRLGAKKADGQMIRTGQIIYRQRGTRVYPGVNVGLGSDDTLFA 75

Query: 262 LEPGVVRYYLDPFHPKR 312
           L  G+V+Y    F PK+
Sbjct: 76  LSDGLVKY--QKFGPKQ 90


>gi|18417600|ref|NP_568310.1| ribosomal protein L27 - like; protein id: At5g15220.1, supported by
           cDNA: gi_15081776 [Arabidopsis thaliana]
 gi|15081777|gb|AAK82543.1| AT5g15220/F8M21_110 [Arabidopsis thaliana]
 gi|18958058|gb|AAL79602.1| AT5g15220/F8M21_110 [Arabidopsis thaliana]
          Length = 154

 Score = 80.5 bits (197), Expect = 4e-14
 Identities = 39/70 (55%), Positives = 53/70 (75%)
 Frame = +1

Query: 76  RNATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSI 255
           R ATK+ AGS  + +DS  + LG KK+ G+ V  G II+RQRGT+F+PG+ VGIGKDH++
Sbjct: 45  RWATKKTAGSTKNGRDSNPKFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTL 104

Query: 256 FALEPGVVRY 285
           FAL+ G VR+
Sbjct: 105 FALKEGRVRF 114


>gi|11358772|pir||T49957 ribosomal protein L27-like - Arabidopsis thaliana
 gi|7671491|emb|CAB89332.1| ribosomal protein L27-like [Arabidopsis thaliana]
          Length = 162

 Score = 80.5 bits (197), Expect = 4e-14
 Identities = 39/70 (55%), Positives = 53/70 (75%)
 Frame = +1

Query: 76  RNATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSI 255
           R ATK+ AGS  + +DS  + LG KK+ G+ V  G II+RQRGT+F+PG+ VGIGKDH++
Sbjct: 45  RWATKKTAGSTKNGRDSNPKFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTL 104

Query: 256 FALEPGVVRY 285
           FAL+ G VR+
Sbjct: 105 FALKEGRVRF 114


>gi|20139372|sp|O65037|RK27_ORYSA 50S ribosomal protein L27, chloroplast precursor
 gi|7441049|pir||T02788 probable ribosomal protein L27 - rice
 gi|2961176|gb|AAC05674.1| ribosomal protein L27 precursor [Oryza sativa]
 gi|20161735|dbj|BAB90651.1| putative 50S ribosomal protein [Oryza sativa (japonica
           cultivar-group)]
 gi|20161923|dbj|BAB90834.1| putative 50S ribosomal protein [Oryza sativa (japonica
           cultivar-group)]
          Length = 195

 Score = 80.5 bits (197), Expect = 4e-14
 Identities = 40/87 (45%), Positives = 59/87 (67%)
 Frame = +1

Query: 67  LQVRNATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKD 246
           L ++ A K+ AGS  + +DS G+RLG K Y  Q    G II+RQRGT+ YPG NVG+GKD
Sbjct: 56  LTIQMAHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIIRQRGTRVYPGNNVGMGKD 115

Query: 247 HSIFALEPGVVRYYLDPFHPKRKFIGV 327
           H++F+L  G+V++  + + P +K + V
Sbjct: 116 HTLFSLIDGLVKF--EKYGPDKKKVSV 140


>gi|19553561|ref|NP_601563.1| ribosomal protein L27 [Corynebacterium glutamicum ATCC 13032]
 gi|23822037|sp|Q8NN51|RL27_CORGL 50S ribosomal protein L27
 gi|21325133|dbj|BAB99755.1| Ribosomal protein L27 [Corynebacterium glutamicum ATCC 13032]
          Length = 88

 Score = 80.1 bits (196), Expect = 6e-14
 Identities = 37/68 (54%), Positives = 52/68 (76%)
 Frame = +1

Query: 82  ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSIFA 261
           A K+ A S ++ +DS  +RLG K++ GQ VS GEI++RQRGTKF+PGENVG G D ++FA
Sbjct: 2   AHKKGASSSSNGRDSEAKRLGVKRFGGQQVSAGEILVRQRGTKFHPGENVGRGGDDTLFA 61

Query: 262 LEPGVVRY 285
           L+ G V++
Sbjct: 62  LKTGAVQF 69


>gi|25166432|dbj|BAC24622.1| rpmA [Wigglesworthia brevipalpis]
          Length = 87

 Score = 79.3 bits (194), Expect = 1e-13
 Identities = 37/66 (56%), Positives = 50/66 (75%)
 Frame = +1

Query: 82  ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSIFA 261
           A K+A GS  + +DS G+RLG K + GQ    G II+RQRGTKF+PG+NVG GKD+S++A
Sbjct: 2   AHKKAGGSTRNGRDSIGKRLGVKLFGGQKAYPGNIIVRQRGTKFHPGKNVGCGKDYSLYA 61

Query: 262 LEPGVV 279
           L+ G+V
Sbjct: 62  LKSGIV 67


>gi|27364127|ref|NP_759655.1| Ribosomal protein L27 [Vibrio vulnificus CMCP6]
 gi|27360245|gb|AAO09182.1|AE016799_80 Ribosomal protein L27 [Vibrio vulnificus CMCP6]
          Length = 85

 Score = 79.3 bits (194), Expect = 1e-13
 Identities = 40/83 (48%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
 Frame = +1

Query: 82  ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSIFA 261
           A K+A GS  + +DS  +RLG K++ G+ V  G II+RQRGT+F+ G NVG+GKDH++FA
Sbjct: 2   AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTQFHAGNNVGLGKDHTLFA 61

Query: 262 LEPGVVRYYLDPFHPK-RKFIGV 327
           L  G V++ +    PK RKF+ +
Sbjct: 62  LTDGKVKFEVK--GPKNRKFVSI 82


>gi|24375150|ref|NP_719193.1| ribosomal protein L27 [Shewanella oneidensis MR-1]
 gi|24349924|gb|AAN56637.1|AE015800_10 ribosomal protein L27 [Shewanella oneidensis MR-1]
          Length = 84

 Score = 79.3 bits (194), Expect = 1e-13
 Identities = 40/82 (48%), Positives = 57/82 (69%)
 Frame = +1

Query: 82  ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSIFA 261
           A K+A GS  + +DS  +RLG K++ G+ V  G II+RQRGTKF+ G NVGIG+DH++FA
Sbjct: 2   AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGVNVGIGRDHTLFA 61

Query: 262 LEPGVVRYYLDPFHPKRKFIGV 327
           L  G V++ +   +  RKFI +
Sbjct: 62  LTDGKVKFEVKGPN-NRKFISI 82


>gi|24323888|ref|NP_715252.1| Ribosomal protein L27 [Wigglesworthia brevipalpis]
          Length = 97

 Score = 79.3 bits (194), Expect = 1e-13
 Identities = 37/66 (56%), Positives = 50/66 (75%)
 Frame = +1

Query: 82  ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSIFA 261
           A K+A GS  + +DS G+RLG K + GQ    G II+RQRGTKF+PG+NVG GKD+S++A
Sbjct: 12  AHKKAGGSTRNGRDSIGKRLGVKLFGGQKAYPGNIIVRQRGTKFHPGKNVGCGKDYSLYA 71

Query: 262 LEPGVV 279
           L+ G+V
Sbjct: 72  LKSGIV 77


>gi|15890033|ref|NP_355714.1| AGR_C_5052p [Agrobacterium tumefaciens]
 gi|17936659|ref|NP_533449.1| 50S ribosomal protein L27 [Agrobacterium tumefaciens str. C58 (U.
           Washington)]
 gi|22096069|sp|Q8UBR6|RL27_AGRT5 50S ribosomal protein L27
 gi|25295470|pir||AG2918 50S ribosomal protein L27 [imported] - Agrobacterium tumefaciens
           (strain C58, Dupont)
 gi|25295472|pir||B97693 ribosomal protein L27 VC0436 [imported] - Agrobacterium tumefaciens
           (strain C58, Cereon)
 gi|15158010|gb|AAK88499.1| AGR_C_5052p [Agrobacterium tumefaciens str. C58 (Cereon)]
 gi|17741301|gb|AAL43765.1| 50S ribosomal protein L27 [Agrobacterium tumefaciens str. C58 (U.
           Washington)]
          Length = 89

 Score = 79.0 bits (193), Expect = 1e-13
 Identities = 38/68 (55%), Positives = 50/68 (73%)
 Frame = +1

Query: 82  ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSIFA 261
           A K+A GS  + +DS  +RLG KK+ G+ V  G II+RQRGT+++PG NVGIGKDH+IFA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGEAVIPGNIILRQRGTQWHPGANVGIGKDHTIFA 61

Query: 262 LEPGVVRY 285
           L  G V +
Sbjct: 62  LTAGNVNF 69


>gi|23029688|ref|ZP_00068006.1| hypothetical protein [Microbulbifer degradans 2-40]
          Length = 85

 Score = 79.0 bits (193), Expect = 1e-13
 Identities = 35/68 (51%), Positives = 51/68 (75%)
 Frame = +1

Query: 82  ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSIFA 261
           A K+A GS  + +DS  +RLG K++ G+ V+ G II+RQRGT+ +PGENVG+GKDH++FA
Sbjct: 2   AHKKAGGSTRNGRDSESKRLGVKRFGGETVTAGSIIVRQRGTRVHPGENVGLGKDHTLFA 61

Query: 262 LEPGVVRY 285
              G V++
Sbjct: 62  KVEGAVKF 69


>gi|15602213|ref|NP_245285.1| RpL27 [Pasteurella multocida]
 gi|20139717|sp|Q9CNS7|RL27_PASMU 50S ribosomal protein L27
 gi|12720592|gb|AAK02432.1| RpL27 [Pasteurella multocida]
          Length = 85

 Score = 79.0 bits (193), Expect = 1e-13
 Identities = 37/82 (45%), Positives = 56/82 (68%)
 Frame = +1

Query: 82  ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSIFA 261
           ATK+A GS  + +DS  +RLG K++ G+ V  G II+RQRGTKF+ G NVG+G+DH++FA
Sbjct: 2   ATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGSNVGMGRDHTLFA 61

Query: 262 LEPGVVRYYLDPFHPKRKFIGV 327
              G V++ +      RK++ +
Sbjct: 62  TADGKVKFEVKG-EKNRKYVSI 82


>gi|23003808|ref|ZP_00047453.1| hypothetical protein [Lactobacillus gasseri]
          Length = 99

 Score = 78.2 bits (191), Expect = 2e-13
 Identities = 36/68 (52%), Positives = 50/68 (73%)
 Frame = +1

Query: 82  ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSIFA 261
           A  +  GS  + ++SAGRRLG K+ +GQ ++ G II RQRGTK +PG+NVGIG D ++FA
Sbjct: 13  AHHKGGGSTANGRNSAGRRLGAKRADGQKINAGSIIFRQRGTKIHPGKNVGIGGDDTLFA 72

Query: 262 LEPGVVRY 285
           L  GVV++
Sbjct: 73  LTSGVVKF 80


>gi|16272819|ref|NP_439040.1| ribosomal protein L27 (rpL27) [Haemophilus influenzae Rd]
 gi|1173007|sp|P44363|RL27_HAEIN 50S ribosomal protein L27
 gi|1075246|pir||F64099 ribosomal protein L27 - Haemophilus influenzae (strain Rd KW20)
 gi|1573896|gb|AAC22535.1| ribosomal protein L27 (rpL27) [Haemophilus influenzae Rd]
          Length = 85

 Score = 78.2 bits (191), Expect = 2e-13
 Identities = 35/68 (51%), Positives = 50/68 (73%)
 Frame = +1

Query: 82  ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSIFA 261
           ATK+A GS  + +DS  +RLG K++ G+ V  G II+RQRGTKF+ G NVG+G+DH++FA
Sbjct: 2   ATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGNNVGMGRDHTLFA 61

Query: 262 LEPGVVRY 285
              G V++
Sbjct: 62  TADGKVKF 69


>gi|16123657|ref|NP_406970.1| 50S ribosomal protein L27 [Yersinia pestis]
 gi|22124587|ref|NP_668010.1| 50S ribosomal subunit protein L27 [Yersinia pestis KIM]
 gi|20139501|sp|Q8ZBA7|RL27_YERPE 50S ribosomal protein L27
 gi|25295471|pir||AH0426 50S ribosomal protein L27 [imported] - Yersinia pestis  (strain
           CO92)
 gi|15981435|emb|CAC92740.1| 50S ribosomal protein L27 [Yersinia pestis CO92]
 gi|21957389|gb|AAM84261.1|AE013669_11 50S ribosomal subunit protein L27 [Yersinia pestis KIM]
          Length = 85

 Score = 78.2 bits (191), Expect = 2e-13
 Identities = 42/83 (50%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
 Frame = +1

Query: 82  ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSIFA 261
           A K+A GS  + +DS  +RLG K++ G+ V  G II+RQRGTKF+ G NVG GKDH++FA
Sbjct: 2   AHKKAGGSTRNGRDSESKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGINVGCGKDHTLFA 61

Query: 262 LEPGVVRYYLDPFHPK-RKFIGV 327
           L  G V++ +    PK RKFI +
Sbjct: 62  LADGKVKFEVK--GPKNRKFISI 82


>gi|15616992|ref|NP_240205.1| 50S ribosomal protein L27 [Buchnera sp. APS]
 gi|11134557|sp|P57468|RL27_BUCAI 50S ribosomal protein L27
 gi|25295473|pir||C84975 50S ribosomal protein L27 [imported] - Buchnera sp. (strain APS)
 gi|10039057|dbj|BAB13091.1| 50S ribosomal protein L27 [Buchnera sp. APS]
          Length = 84

 Score = 77.8 bits (190), Expect = 3e-13
 Identities = 37/68 (54%), Positives = 50/68 (73%)
 Frame = +1

Query: 82  ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSIFA 261
           A K+A GS  + +DS  +RLG K + GQ +S G II++QRGTKF+PG+NVG GKDH+IFA
Sbjct: 2   AHKKAGGSTRNGRDSNAQRLGVKCFGGQLISAGSIIVKQRGTKFHPGKNVGCGKDHTIFA 61

Query: 262 LEPGVVRY 285
           +  G V +
Sbjct: 62  IVKGKVEF 69


>gi|23502702|ref|NP_698829.1| ribosomal protein L27 [Brucella suis 1330]
 gi|16973425|gb|AAL32286.1|AF119331_2 50S ribosomal protein L27 [Brucella melitensis biovar Abortus]
 gi|23348715|gb|AAN30744.1|AE014475_3 ribosomal protein L27 [Brucella suis 1330]
          Length = 89

 Score = 77.0 bits (188), Expect = 5e-13
 Identities = 37/68 (54%), Positives = 49/68 (72%)
 Frame = +1

Query: 82  ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSIFA 261
           A K+A GS  + +DS  +RLG KK+ G+ V  G II+RQRGTK++PG NVG+GKDH+IFA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGEAVLAGNIIVRQRGTKWHPGANVGLGKDHTIFA 61

Query: 262 LEPGVVRY 285
              G V +
Sbjct: 62  TVNGSVSF 69


>gi|24213551|ref|NP_711032.1| ribosomal protein L27 [Leptospira interrogans serovar lai str.
           56601]
 gi|24194337|gb|AAN48050.1|AE011270_4 ribosomal protein L27 [Leptospira interrogans serovar lai str.
           56601]
          Length = 84

 Score = 77.0 bits (188), Expect = 5e-13
 Identities = 35/68 (51%), Positives = 49/68 (72%)
 Frame = +1

Query: 82  ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSIFA 261
           A K+  GS  + +DS  +RLG K++ G+ V  G I++RQRGTKF PG NVG+GKDH++FA
Sbjct: 2   AHKKGGGSSKNGRDSNSQRLGVKRFGGESVLAGNILVRQRGTKFRPGNNVGLGKDHTLFA 61

Query: 262 LEPGVVRY 285
           L  G V++
Sbjct: 62  LVTGKVKF 69


>gi|23056455|gb|ZP_00082469.1| hypothetical protein [Geobacter metallireducens]
          Length = 85

 Score = 77.0 bits (188), Expect = 5e-13
 Identities = 36/68 (52%), Positives = 49/68 (72%)
 Frame = +1

Query: 82  ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSIFA 261
           A K+  GS  + +DS  +RLG KKY G++V  G II RQRGT+ +PG NVG GKD+++FA
Sbjct: 2   AHKKGVGSTRNGRDSESKRLGCKKYGGENVKAGNIIYRQRGTQIHPGTNVGCGKDYTLFA 61

Query: 262 LEPGVVRY 285
           L  GVV++
Sbjct: 62  LIDGVVKF 69


>gi|23126411|gb|ZP_00108307.1| hypothetical protein [Nostoc punctiforme]
          Length = 98

 Score = 76.6 bits (187), Expect = 6e-13
 Identities = 37/68 (54%), Positives = 48/68 (70%)
 Frame = +1

Query: 82  ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSIFA 261
           A K+  GS  + +DS  +RLG K+Y GQ V  G I++RQRGTKF+PG NVGIG D ++FA
Sbjct: 2   AHKKGTGSTRNGRDSNAQRLGVKRYGGQVVRAGNILVRQRGTKFHPGNNVGIGSDDTLFA 61

Query: 262 LEPGVVRY 285
           L  GVV +
Sbjct: 62  LIDGVVMF 69


>gi|15595125|ref|NP_212914.1| ribosomal protein L27 (rpmA) [Borrelia burgdorferi]
 gi|3914734|sp|O51721|RL27_BORBU 50S ribosomal protein L27
 gi|7441045|pir||C70197 ribosomal protein L27 (rpmA) - Lyme disease spirochete
 gi|2688720|gb|AAC67128.1| ribosomal protein L27 (rpmA) [Borrelia burgdorferi B31]
          Length = 81

 Score = 76.6 bits (187), Expect = 6e-13
 Identities = 36/68 (52%), Positives = 50/68 (73%)
 Frame = +1

Query: 82  ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSIFA 261
           AT ++ GS  + +DS  +RLG K+  GQ V  GEII+RQRGTKF+ G+NVG+G+D++IFA
Sbjct: 2   ATSKSGGSSKNGRDSISKRLGVKRSGGQFVKAGEIIVRQRGTKFHKGKNVGLGRDYTIFA 61

Query: 262 LEPGVVRY 285
           L  G V +
Sbjct: 62  LSSGKVEF 69


>gi|15803725|ref|NP_289759.1| 50S ribosomal subunit protein L27 [Escherichia coli O157:H7 EDL933]
 gi|15833318|ref|NP_312091.1| 50S ribosomal subunit protein L27 [Escherichia coli O157:H7]
 gi|16131075|ref|NP_417652.1| 50S ribosomal subunit protein L27 [Escherichia coli K12]
 gi|24114474|ref|NP_708984.1| 50S ribosomal subunit protein L27 [Shigella flexneri 2a str. 301]
 gi|26249768|ref|NP_755808.1| 50S ribosomal protein L27 [Escherichia coli CFT073]
 gi|132831|sp|P02427|RL27_ECOLI 50S ribosomal protein L27
 gi|279655|pir||R5EC27 ribosomal protein L27 [validated] - Escherichia coli (strain K-12)
 gi|25295474|pir||C85982 50S ribosomal subunit protein L27 [imported] - Escherichia coli
           (strain O157:H7, substrain EDL933)
 gi|25391474|pir||H91136 50S ribosomal subunit protein L27 [imported] - Escherichia coli
           (strain O157:H7, substrain RIMD 0509952)
 gi|216637|dbj|BAA02526.1| ribosomal protein L27 [Escherichia coli]
 gi|606123|gb|AAA57986.1| 50S ribosomal subunit protein L27 [Escherichia coli]
 gi|1789576|gb|AAC76217.1| 50S ribosomal subunit protein L27 [Escherichia coli K12]
 gi|12517800|gb|AAG58319.1|AE005547_5 50S ribosomal subunit protein L27 [Escherichia coli O157:H7 EDL933]
 gi|13363537|dbj|BAB37487.1| 50S ribosomal subunit protein L27 [Escherichia coli O157:H7]
 gi|24053657|gb|AAN44691.1|AE015334_5 50S ribosomal subunit protein L27 [Shigella flexneri 2a str. 301]
 gi|26110196|gb|AAN82382.1|AE016767_142 50S ribosomal protein L27 [Escherichia coli CFT073]
          Length = 85

 Score = 76.3 bits (186), Expect = 8e-13
 Identities = 40/83 (48%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
 Frame = +1

Query: 82  ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSIFA 261
           A K+A GS  + +DS  +RLG K++ G+ V  G II+RQRGTKF+ G NVG G+DH++FA
Sbjct: 2   AHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFA 61

Query: 262 LEPGVVRYYLDPFHPK-RKFIGV 327
              G V++ +    PK RKFI +
Sbjct: 62  KADGKVKFEVK--GPKNRKFISI 82


>gi|15791483|ref|NP_281306.1| 50S ribosomal protein L27 [Campylobacter jejuni]
 gi|20139825|sp|Q9PJ31|RL27_CAMJE 50S ribosomal protein L27
 gi|11276864|pir||G81425 50S ribosomal protein L27 Cj0095 [imported] - Campylobacter jejuni
           (strain NCTC 11168)
 gi|6967589|emb|CAB72579.1| 50S ribosomal protein L27 [Campylobacter jejuni subsp. jejuni NCTC
           11168]
          Length = 84

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 37/68 (54%), Positives = 48/68 (70%)
 Frame = +1

Query: 82  ATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTKFYPGENVGIGKDHSIFA 261
           A K+  GS  + +DS GRRLG KK+ G+ V  G II+RQRGT  + G NVG+GKDH+IFA
Sbjct: 2   AHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTATHAGNNVGMGKDHTIFA 61

Query: 262 LEPGVVRY 285
           L  G V++
Sbjct: 62  LIDGFVKF 69


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 20, 2003 11:48 PM
  Number of letters in database: 442,128,549
  Number of sequences in database:  1,376,251
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 805,992,919
Number of Sequences: 1376251
Number of extensions: 16390608
Number of successful extensions: 43576
Number of sequences better than 10.0: 321
Number of HSP's better than 10.0 without gapping: 41530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43512
length of database: 442,128,549
effective HSP length: 125
effective length of database: 270,097,174
effective search space used: 66443904804
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)