MedBlast(0.8) Results

• Direct References
• Indirect References
• Options
• BLASTN
• BLASTX

Direct References:

References Summary:

1. Geisbrecht BV, Zhu D, Schulz K, Nau K, Morrell JC, Geraghty M, Schulz H, Erdmann R, Gould SJ
   Molecular characterization of Saccharomyces cerevisiae Delta3, Delta2-enoyl-CoA isomerase.
   J Biol Chem 1998 Dec 11;273(50):33184-91
   PMID: 9837886
2. Johnston M, Hillier L, Riles L, Albermann K, Andre B, Ansorge W, Benes V, Bruckner M, Delius H, Dubois E, Dusterhoft A, Entian KD, Floeth M, Goffeau A, Hebling U, Heumann K, Heuss-Neitzel D, Hilbert H, Hilger F, Kleine K, Kotter P, Louis EJ, Messenguy F, Mewes HW, Hoheisel JD, et al
   The nucleotide sequence of Saccharomyces cerevisiae chromosome XII.
   Nature 1997 May 29;387(6632 Suppl):87-90
   PMID: 9169871
3. Cost GJ, Boeke JD
   A useful colony colour phenotype associated with the yeast selectable/counter-selectable marker MET15.
   Yeast 1996 Aug;12(10):939-41
   PMID: 8873447
4. Neubauer G, Gottschalk A, Fabrizio P, Seraphin B, Luhrmann R, Mann M
   Identification of the proteins of the yeast U1 small nuclear ribonucleoprotein complex by mass spectrometry.
   Proc Natl Acad Sci U S A 1997 Jan 21;94(2):385-90
   PMID: 9012791
5. Mursula AM, van Aalten DM, Hiltunen JK, Wierenga RK
   The crystal structure of delta(3)-delta(2)-enoyl-CoA isomerase.
   J Mol Biol 2001 Jun 15;309(4):845-53
   PMID: 11399063

Indirect References:

References Summary:

1. Gurvitz A, Mursula AM, Firzinger A, Hamilton B, Kilpelainen SH, Hartig A, Ruis H, Hiltunen JK, Rottensteiner H
   Peroxisomal Delta3-cis-Delta2-trans-enoyl-CoA isomerase encoded by ECI1 is required for growth of the yeast Saccharomyces cerevisiae on unsaturated fatty acids.
   J Biol Chem 1998 Nov 20;273(47):31366-74
   PMID: 9813046
2. Geisbrecht BV, Zhang D, Schulz H, Gould SJ
   Characterization of PECI, a novel monofunctional Delta(3), Delta(2)-enoyl-CoA isomerase of mammalian peroxisomes.
   J Biol Chem 1999 Jul 30;274(31):21797-803
   PMID: 10419495
3. Geisbrecht BV, Schulz K, Nau K, Geraghty MT, Schulz H, Erdmann R, Gould SJ
   Preliminary characterization of Yor180Cp: identification of a novel peroxisomal protein of saccharomyces cerevisiae involved in fatty acid metabolism.
   Biochem Biophys Res Commun 1999 Jun 24;260(1):28-34
   PMID: 10381339
4. Gurvitz A, Mursula AM, Yagi AI, Hartig A, Ruis H, Rottensteiner H, Hiltunen JK
   Alternatives to the isomerase-dependent pathway for the beta-oxidation of oleic acid are dispensable in Saccharomyces cerevisiae. Identification of YOR180c/DCI1 encoding peroxisomal delta(3,5)-delta(2,4)-dienoyl-CoA isomerase.
   J Biol Chem 1999 Aug 27;274(35):24514-21
   PMID: 10455114
5. Karpichev IV, Small GM
   Evidence for a novel pathway for the targeting of a Saccharomyces cerevisiae peroxisomal protein belonging to the isomerase/hydratase family.
   J Cell Sci 2000 Feb;113 ( Pt 3):533-44
   PMID: 10639339
6. Gurvitz A, Hamilton B, Ruis H, Hartig A
   Peroxisomal degradation of trans-unsaturated fatty acids in the yeast Saccharomyces cerevisiae.
   J Biol Chem 2001 Jan 12;276(2):895-903
   PMID: 11032827
7. Yang X, Purdue PE, Lazarow PB
   Eci1p uses a PTS1 to enter peroxisomes: either its own or that of a partner, Dci1p.
   Eur J Cell Biol 2001 Feb;80(2):126-38
   PMID: 11302517
8. Gurvitz A, Wabnegger L, Langer S, Hamilton B, Ruis H, Hartig A
   The tetratricopeptide repeat domains of human, tobacco, and nematode PEX5 proteins are functionally interchangeable with the analogous native domain for peroxisomal import of PTS1-terminated proteins in yeast.
   Mol Genet Genomics 2001 Apr;265(2):276-86
   PMID: 11361338
9. Gurvitz A, Wabnegger L, Yagi AI, Binder M, Hartig A, Ruis H, Hamilton B, Dawes IW, Hiltunen JK, Rottensteiner H
   Function of human mitochondrial 2,4-dienoyl-CoA reductase and rat monofunctional Delta3-Delta2-enoyl-CoA isomerase in beta-oxidation of unsaturated fatty acids.
   Biochem J 1999 Dec 15;344 Pt 3:903-14
   PMID: 10585880

Options:

• Limit of E-value: 1e-20
• Limit of Length: 100000
• Limit of references returned each search: 40
• Limit of retry times: 3
• Direct references: Yes
• Indirect references: Yes
• Allow symbol with hyphen: Yes
• Use stop word list: Yes
• Thesaurus:
  • Saccharomyces cerevisiae (Version: 20021123.0)

 
BLASTN 2.2.5 [Nov-16-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
RID: 1048224718-03712-13029
Query= 
         (843 letters)

Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences) 
           1,706,607 sequences; 7,920,131,457 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|3643264|gb|AF090442.1|AF090442 Saccharomyces cerevisiae d3,d2...  1629   0.0  
gi|596030|gb|U17243.1|YSCL8003 Saccharomyces cerevisiae chromoso...  1629   0.0  
gi|17506644|ref|NM_060549.1| Caenorhabditis elegans essential pu...    42   1.4  
gi|21536175|gb|AC121867.2| Mus musculus clone RP24-115M7, comple...    42   1.4  
gi|16328299|gb|AC093803.3| Homo sapiens BAC clone RP11-319N12 fr...    42   1.4  
gi|15778778|gb|AC025821.7| Homo sapiens BAC clone RP11-472F4 fro...    42   1.4  
gi|1627787|emb|Z81063.1|CEF15D3 Caenorhabditis elegans cosmid F1...    42   1.4  
gi|16413677|emb|AL596168.1| Listeria innocua Clip11262 complete ...    42   1.4  
gi|22778598|dbj|AP004603.1| Oceanobacillus iheyensis genomic DNA...    42   1.4  
gi|24665853|ref|NM_140713.1| Drosophila melanogaster CG16793-PA ...    40   5.3  
gi|28850251|gb|AC140949.1| Pan troglodytes BAC clone RP43-168N2 ...    40   5.3  
gi|28630142|gb|AC122245.5| Mus musculus chromosome 18 clone RP23...    40   5.3  
gi|23093243|gb|AE003524.3| Drosophila melanogaster chromosome 3L...    40   5.3  
gi|23334838|gb|AC123032.5| Mus musculus chromosome 10 clone RP24...    40   5.3  
gi|21306595|gb|AC009373.7| Drosophila melanogaster 3L BAC RP98-2...    40   5.3  
gi|20303543|gb|AC021077.5| Homo sapiens chromosome 5 clone CTB-7...    40   5.3  
gi|19697478|gb|AC087209.7| Homo sapiens chromosome 8, clone RP11...    40   5.3  
gi|18496809|gb|AF466818.1| Bacteroides forsythus strain ATCC 430...    40   5.3  
gi|18497207|gb|AC025536.7| Homo sapiens BAC clone RP11-220B2 fro...    40   5.3  
gi|15638734|gb|AC092593.2| Homo sapiens BAC clone RP11-68D16 fro...    40   5.3  
gi|19033629|gb|AC104013.4| Homo sapiens chromosome 8, clone RP11...    40   5.3  
gi|18446968|gb|AY075208.1| Drosophila melanogaster AT14535 full ...    40   5.3  
gi|12745766|gb|AF317310.1|AF317310 Iris hollandica IRIP-binding ...    40   5.3  
gi|15808523|gb|AC091939.3| Homo sapiens chromosome 5 clone RP11-...    40   5.3  
gi|6911603|emb|AL121825.19|HSBA436C9 Human DNA sequence from clo...    40   5.3  
gi|15281221|gb|AC025434.6| Homo sapiens chromosome 5 clone CTC-3...    40   5.3  
gi|14573683|gb|AC018753.5|AC018753 Homo sapiens chromosome 5 clo...    40   5.3  
gi|14249082|gb|AC011942.6|AC011942 Homo sapiens, clone RP11-16I1...    40   5.3  
gi|12000472|gb|AC078931.9|AC078931 Mus musculus  BAC RP23-419E4 ...    40   5.3  
gi|7408127|gb|AC009489.3|AC009489 Homo sapiens BAC clone RP11-33...    40   5.3  
gi|29122863|dbj|AP005167.2| Oryza sativa (japonica cultivar-grou...    40   5.3  
gi|9187154|emb|AL136230.9| Human DNA sequence from clone RP1-95I...    40   5.3  
gi|12666254|emb|AL356461.15| Human DNA sequence from clone RP11-...    40   5.3  

ALIGNMENTS
>gi|3643264|gb|AF090442.1|AF090442 Saccharomyces cerevisiae d3,d2-enoyl CoA isomerase ECI1 gene,
           complete cds
          Length = 843

 Score = 1629 bits (822), Expect = 0.0
 Identities = 836/843 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtcgcaagaaattaggcaaaatgagaaaatcagttatcgtattgaaggaccattcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgtcgcaagaaattaggcaaaatgagaaaatcagttatcgtattgaaggaccattcttc 60

                                                                       
Query: 61  attattcacttaatgaaccctgacaatttgaatgcactagaaggtgaagactatatttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  attattcacttaatgaaccctgacaatttgaatgcactagaaggtgaagactatatttat 120

                                                                       
Query: 121 ttaggagagttactagaactagcggacagaaatcgtgatgtatattttacaattatacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttaggagagttactagaactagcggacagaaatcgtgatgtatattttacaattatacaa 180

                                                                       
Query: 181 agcagtggtagannnnnnnccagtggtgctgatttcaagggtattgcaaaagcccaaggg 240
           ||||||||||||       |||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agcagtggtagatttttttccagtggtgctgatttcaagggtattgcaaaagcccaaggg 240

                                                                       
Query: 241 gatgataccaataaatatccttcggaaacaagcaagtgggtgtcaaattttgtcgctaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gatgataccaataaatatccttcggaaacaagcaagtgggtgtcaaattttgtcgctaga 300

                                                                       
Query: 301 aatgtttatgtcactgatgccttcatcaagcattccaaagttttaatttgctgtttgaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aatgtttatgtcactgatgccttcatcaagcattccaaagttttaatttgctgtttgaat 360

                                                                       
Query: 361 ggaccagcaatagggttgagcgcggcactggtagcgttatgtgacattgtgtacagtata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaccagcaatagggttgagcgcggcactggtagcgttatgtgacattgtgtacagtata 420

                                                                       
Query: 421 aatgacaaggtttatttgctatacccctttgctaacttaggactaattaccgaaggtggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aatgacaaggtttatttgctatacccctttgctaacttaggactaattaccgaaggtggt 480

                                                                       
Query: 481 acaacggtctctttgccattgaagtttggcacaaatacgacgtatgaatgcctcatgttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 acaacggtctctttgccattgaagtttggcacaaatacgacgtatgaatgcctcatgttc 540

                                                                       
Query: 541 aacaaaccattcaagtacgatataatgtgcgagaacggatttataagcaagaattttaac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aacaaaccattcaagtacgatataatgtgcgagaacggatttataagcaagaattttaac 600

                                                                       
Query: 601 atgccatcttcaaacgctgaagcgttcaatgcaaaggtcttagaagaattgagggagaaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 atgccatcttcaaacgctgaagcgttcaatgcaaaggtcttagaagaattgagggagaaa 660

                                                                       
Query: 661 gtgaaagggctatacctgcccagttgcttagggatgaaaaaattgctgaaatcgaaccac 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gtgaaagggctatacctgcccagttgcttagggatgaaaaaattgctgaaatcgaaccac 720

                                                                       
Query: 721 atcgatgcattcaataaggctaactcagtggaagtaaatgaatctctcaagtattgggta 780
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 atcgatgcattcaataaggctaactcagtggaagtaaatgaatctctcaagtattgggta 780

                                                                       
Query: 781 gatggagagcccttaaaaagatttaggcagctgggctcgaaacaaaggaagcatcgttta 840
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gatggagagcccttaaaaagatttaggcagctgggctcgaaacaaaggaagcatcgttta 840

              
Query: 841 tga 843
           |||
Sbjct: 841 tga 843


>gi|596030|gb|U17243.1|YSCL8003 Saccharomyces cerevisiae chromosome XII cosmid 8003
          Length = 40214

 Score = 1629 bits (822), Expect = 0.0
 Identities = 836/843 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    atgtcgcaagaaattaggcaaaatgagaaaatcagttatcgtattgaaggaccattcttc 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7166 atgtcgcaagaaattaggcaaaatgagaaaatcagttatcgtattgaaggaccattcttc 7107

                                                                        
Query: 61   attattcacttaatgaaccctgacaatttgaatgcactagaaggtgaagactatatttat 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7106 attattcacttaatgaaccctgacaatttgaatgcactagaaggtgaagactatatttat 7047

                                                                        
Query: 121  ttaggagagttactagaactagcggacagaaatcgtgatgtatattttacaattatacaa 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7046 ttaggagagttactagaactagcggacagaaatcgtgatgtatattttacaattatacaa 6987

                                                                        
Query: 181  agcagtggtagannnnnnnccagtggtgctgatttcaagggtattgcaaaagcccaaggg 240
            ||||||||||||       |||||||||||||||||||||||||||||||||||||||||
Sbjct: 6986 agcagtggtagatttttttccagtggtgctgatttcaagggtattgcaaaagcccaaggg 6927

                                                                        
Query: 241  gatgataccaataaatatccttcggaaacaagcaagtgggtgtcaaattttgtcgctaga 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6926 gatgataccaataaatatccttcggaaacaagcaagtgggtgtcaaattttgtcgctaga 6867

                                                                        
Query: 301  aatgtttatgtcactgatgccttcatcaagcattccaaagttttaatttgctgtttgaat 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6866 aatgtttatgtcactgatgccttcatcaagcattccaaagttttaatttgctgtttgaat 6807

                                                                        
Query: 361  ggaccagcaatagggttgagcgcggcactggtagcgttatgtgacattgtgtacagtata 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6806 ggaccagcaatagggttgagcgcggcactggtagcgttatgtgacattgtgtacagtata 6747

                                                                        
Query: 421  aatgacaaggtttatttgctatacccctttgctaacttaggactaattaccgaaggtggt 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6746 aatgacaaggtttatttgctatacccctttgctaacttaggactaattaccgaaggtggt 6687

                                                                        
Query: 481  acaacggtctctttgccattgaagtttggcacaaatacgacgtatgaatgcctcatgttc 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6686 acaacggtctctttgccattgaagtttggcacaaatacgacgtatgaatgcctcatgttc 6627

                                                                        
Query: 541  aacaaaccattcaagtacgatataatgtgcgagaacggatttataagcaagaattttaac 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6626 aacaaaccattcaagtacgatataatgtgcgagaacggatttataagcaagaattttaac 6567

                                                                        
Query: 601  atgccatcttcaaacgctgaagcgttcaatgcaaaggtcttagaagaattgagggagaaa 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6566 atgccatcttcaaacgctgaagcgttcaatgcaaaggtcttagaagaattgagggagaaa 6507

                                                                        
Query: 661  gtgaaagggctatacctgcccagttgcttagggatgaaaaaattgctgaaatcgaaccac 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6506 gtgaaagggctatacctgcccagttgcttagggatgaaaaaattgctgaaatcgaaccac 6447

                                                                        
Query: 721  atcgatgcattcaataaggctaactcagtggaagtaaatgaatctctcaagtattgggta 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6446 atcgatgcattcaataaggctaactcagtggaagtaaatgaatctctcaagtattgggta 6387

                                                                        
Query: 781  gatggagagcccttaaaaagatttaggcagctgggctcgaaacaaaggaagcatcgttta 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6386 gatggagagcccttaaaaagatttaggcagctgggctcgaaacaaaggaagcatcgttta 6327

               
Query: 841  tga 843
            |||
Sbjct: 6326 tga 6324


>gi|17506644|ref|NM_060549.1| Caenorhabditis elegans essential putative cytoplasmic protein family
            member, nematode specific (95.0 kD), mRNA
          Length = 2472

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 532  ctcatgttcaacaaaccattc 552
            |||||||||||||||||||||
Sbjct: 2359 ctcatgttcaacaaaccattc 2379


>gi|21536175|gb|AC121867.2| Mus musculus clone RP24-115M7, complete sequence
          Length = 165179

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 353    gtttgaatggaccagcaatag 373
              |||||||||||||||||||||
Sbjct: 157300 gtttgaatggaccagcaatag 157320


>gi|16328299|gb|AC093803.3| Homo sapiens BAC clone RP11-319N12 from 4, complete sequence
          Length = 191903

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 159   tgtatattttacaattataca 179
             |||||||||||||||||||||
Sbjct: 71217 tgtatattttacaattataca 71197


>gi|15778778|gb|AC025821.7| Homo sapiens BAC clone RP11-472F4 from 4, complete sequence
          Length = 178378

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 159    tgtatattttacaattataca 179
              |||||||||||||||||||||
Sbjct: 142505 tgtatattttacaattataca 142485


>gi|1627787|emb|Z81063.1|CEF15D3 Caenorhabditis elegans cosmid F15D3, complete sequence
          Length = 42660

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 532   ctcatgttcaacaaaccattc 552
             |||||||||||||||||||||
Sbjct: 29999 ctcatgttcaacaaaccattc 30019


>gi|16413677|emb|AL596168.1| Listeria innocua Clip11262 complete genome, segment 6/12
          Length = 333050

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 696    gaaaaaattgctgaaatcgaa 716
              |||||||||||||||||||||
Sbjct: 185791 gaaaaaattgctgaaatcgaa 185811


>gi|22778598|dbj|AP004603.1| Oceanobacillus iheyensis genomic DNA, section 11/13
          Length = 299650

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 20     aaaatgagaaaatcagttatcgtat 44
              ||||||||||||||||| |||||||
Sbjct: 123396 aaaatgagaaaatcagtaatcgtat 123372


>gi|24665853|ref|NM_140713.1| Drosophila melanogaster CG16793-PA (CG16793), mRNA
          Length = 2366

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 756 aaatgaatctctcaagtatt 775
           ||||||||||||||||||||
Sbjct: 26  aaatgaatctctcaagtatt 45


>gi|28850251|gb|AC140949.1| Pan troglodytes BAC clone RP43-168N2 from 7, complete sequence
          Length = 193777

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 783    tggagagcccttaaaaagatttaggcag 810
              |||| ||||||||||||| |||||||||
Sbjct: 113121 tggaaagcccttaaaaagctttaggcag 113148


>gi|28630142|gb|AC122245.5| Mus musculus chromosome 18 clone RP23-151P21, complete sequence
          Length = 191988

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 162    atattttacaattatacaaa 181
              ||||||||||||||||||||
Sbjct: 111417 atattttacaattatacaaa 111436


>gi|23093243|gb|AE003524.3| Drosophila melanogaster chromosome 3L, section 61 of 83 of the complete
              sequence
          Length = 328676

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 756    aaatgaatctctcaagtatt 775
              ||||||||||||||||||||
Sbjct: 186249 aaatgaatctctcaagtatt 186230


>gi|23334838|gb|AC123032.5| Mus musculus chromosome 10 clone RP24-480K24, complete sequence
          Length = 162676

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 158   atgtatattttacaattata 177
             ||||||||||||||||||||
Sbjct: 98146 atgtatattttacaattata 98165


>gi|21306595|gb|AC009373.7| Drosophila melanogaster 3L BAC RP98-22B18 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 167630

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 756   aaatgaatctctcaagtatt 775
             ||||||||||||||||||||
Sbjct: 26047 aaatgaatctctcaagtatt 26028


>gi|20303543|gb|AC021077.5| Homo sapiens chromosome 5 clone CTB-77B1, complete sequence
          Length = 203134

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 685   tgcttagggatgaaaaaatt 704
             ||||||||||||||||||||
Sbjct: 22402 tgcttagggatgaaaaaatt 22421


>gi|19697478|gb|AC087209.7| Homo sapiens chromosome 8, clone RP11-31C7, complete sequence
          Length = 144094

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 113    atatttatttaggagagtta 132
              ||||||||||||||||||||
Sbjct: 109859 atatttatttaggagagtta 109878


>gi|18496809|gb|AF466818.1| Bacteroides forsythus strain ATCC 43037 16S-23S intergenic spacer
           region, complete sequence
          Length = 740

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 52  ccattcttcattattcactt 71
           ||||||||||||||||||||
Sbjct: 337 ccattcttcattattcactt 318


>gi|18497207|gb|AC025536.7| Homo sapiens BAC clone RP11-220B2 from 7, complete sequence
          Length = 51012

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 783   tggagagcccttaaaaagatttaggcag 810
             |||| ||||||||||||| |||||||||
Sbjct: 40490 tggaaagcccttaaaaagctttaggcag 40517


>gi|15638734|gb|AC092593.2| Homo sapiens BAC clone RP11-68D16 from 4, complete sequence
          Length = 128255

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 583   ataagcaagaattttaacat 602
             ||||||||||||||||||||
Sbjct: 13278 ataagcaagaattttaacat 13259


>gi|19033629|gb|AC104013.4| Homo sapiens chromosome 8, clone RP11-281P4, complete sequence
          Length = 158405

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 113  atatttatttaggagagtta 132
            ||||||||||||||||||||
Sbjct: 4624 atatttatttaggagagtta 4643


>gi|18446968|gb|AY075208.1| Drosophila melanogaster AT14535 full length cDNA
          Length = 2387

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 756 aaatgaatctctcaagtatt 775
           ||||||||||||||||||||
Sbjct: 26  aaatgaatctctcaagtatt 45


>gi|12745766|gb|AF317310.1|AF317310 Iris hollandica IRIP-binding genomic DNA fragment BSS25
          Length = 132

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 206 gtgctgatttcaagggtatt 225
           ||||||||||||||||||||
Sbjct: 54  gtgctgatttcaagggtatt 35


>gi|15808523|gb|AC091939.3| Homo sapiens chromosome 5 clone RP11-32D16, complete sequence
          Length = 190346

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 1      atgtcgcaagaaattaggcaaaat 24
              |||||| |||||||||||||||||
Sbjct: 177484 atgtcgaaagaaattaggcaaaat 177461


>gi|6911603|emb|AL121825.19|HSBA436C9 Human DNA sequence from clone RP11-436C9 on chromosome 22, complete
             sequence
          Length = 124337

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 275   agtgggtgtcaaattttgtc 294
             ||||||||||||||||||||
Sbjct: 33443 agtgggtgtcaaattttgtc 33424


>gi|15281221|gb|AC025434.6| Homo sapiens chromosome 5 clone CTC-340I23, complete sequence
          Length = 130388

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 113   atatttatttaggagagtta 132
             ||||||||||||||||||||
Sbjct: 69927 atatttatttaggagagtta 69908


>gi|14573683|gb|AC018753.5|AC018753 Homo sapiens chromosome 5 clone CTC-376I20, complete sequence
          Length = 81971

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 685   tgcttagggatgaaaaaatt 704
             ||||||||||||||||||||
Sbjct: 27740 tgcttagggatgaaaaaatt 27721


>gi|14249082|gb|AC011942.6|AC011942 Homo sapiens, clone RP11-16I13, complete sequence
          Length = 122538

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    ttaatgaaccctgacaattt 89
             ||||||||||||||||||||
Sbjct: 19694 ttaatgaaccctgacaattt 19713


>gi|12000472|gb|AC078931.9|AC078931 Mus musculus  BAC RP23-419E4 (Roswell Park Cancer Institute Mouse BAC
             Library) complete sequence
          Length = 188750

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 693   gatgaaaaaattgctgaaat 712
             ||||||||||||||||||||
Sbjct: 54182 gatgaaaaaattgctgaaat 54201


>gi|7408127|gb|AC009489.3|AC009489 Homo sapiens BAC clone RP11-339J4 from Y, complete sequence
          Length = 100953

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 158   atgtatattttacaattata 177
             ||||||||||||||||||||
Sbjct: 42255 atgtatattttacaattata 42236


>gi|29122863|dbj|AP005167.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0060O17, complete sequence
          Length = 152365

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 158   atgtatattttacaattata 177
             ||||||||||||||||||||
Sbjct: 31105 atgtatattttacaattata 31086


>gi|9187154|emb|AL136230.9| Human DNA sequence from clone RP1-95I21 on chromosome 6 Contains STSs
            and GSSs, complete sequence
          Length = 120515

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 627  caatgcaaaggtcttagaagaatt 650
            ||||||||||||||||||| ||||
Sbjct: 2419 caatgcaaaggtcttagaataatt 2396


>gi|12666254|emb|AL356461.15| Human DNA sequence from clone RP11-180D15 on chromosome Xq13.2-21.2,
             complete sequence
          Length = 127615

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 113   atatttatttaggagagtta 132
             ||||||||||||||||||||
Sbjct: 96782 atatttatttaggagagtta 96763


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
  or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Mar 19, 2003 10:12 PM
  Number of letters in database: -669,803,131
  Number of sequences in database:  1,706,607
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,862,820
Number of Sequences: 1706607
Number of extensions: 3862820
Number of successful extensions: 71866
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71778
Number of HSP's gapped (non-prelim): 86
length of query: 843
length of database: 7,920,131,457
effective HSP length: 22
effective length of query: 821
effective length of database: 7,882,586,103
effective search space: 6471603190563
effective search space used: 6471603190563
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)






 
BLASTX 2.2.5 [Nov-16-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
RID: 1048224726-03768-9337
Query= 
         (843 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           1,375,764 sequences; 441,946,756 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|6323314|ref|NP_013386.1| enoyl-CoA isomerase; Eci1p [Saccharo...   568   e-161
gi|15826830|pdb|1HNO|A Chain A, Crystal Structure Of Peroxisomal...   566   e-160
gi|6324754|ref|NP_014823.1| Delta(3,5)-delta(2,4)-dienoyl-CoA is...   250   2e-65
gi|28918865|gb|EAA28534.1| hypothetical protein [Neurospora crassa]   156   3e-37
gi|21298626|gb|EAA10771.1| agCP5877 [Anopheles gambiae str. PEST]      92   7e-18
gi|2226378|gb|AAC19408.1| ACBP/ECHM [Cyprinus carpio]                  91   2e-17
gi|24654903|ref|NP_612065.1| CG13890-PA [Drosophila melanogaster...    91   3e-17
gi|21483288|gb|AAM52619.1| GH11143p [Drosophila melanogaster]          91   3e-17
gi|17535521|ref|NP_496330.1| Acyl CoA binding protein enoyl-CoA ...    89   1e-16
gi|15886859|emb|CAC85627.1| Y chromosomal chromodomain protein [...    75   1e-12
gi|25777621|ref|NP_736608.1| chromodomain protein, Y chromosome-...    75   2e-12
gi|25777619|ref|NP_736607.1| chromodomain protein, Y chromosome-...    75   2e-12
gi|4558756|gb|AAD22734.1|AF081258_1 testis-specific chromodomain...    75   2e-12
gi|25777617|ref|NP_004815.2| chromodomain protein, Y chromosome-...    75   2e-12
gi|4757968|ref|NP_004816.1| Y chromosome chromodomain protein 2;...    74   3e-12
gi|6753398|ref|NP_034011.1| chromodomain protein, Y chromosome-l...    73   5e-12
gi|23137581|ref|ZP_00119286.1| hypothetical protein [Cytophaga h...    73   6e-12
gi|4757966|ref|NP_004671.1| Y chromosome chromodomain protein 1 ...    72   8e-12
gi|25453481|ref|NP_733841.1| Y chromosome chromodomain protein 1...    72   8e-12
gi|8574030|emb|CAB94781.1| dJ1013A10.3 (related to DBI (diazepam...    72   1e-11
gi|5174625|ref|NP_006108.1| peroxisomal D3,D2-enoyl-CoA isomeras...    72   1e-11
gi|12803665|gb|AAH02668.1|AAH02668 peroxisomal D3,D2-enoyl-CoA i...    72   1e-11
gi|12052810|emb|CAB66577.1| hypothetical protein [Homo sapiens]        72   1e-11
gi|21707485|gb|AAH33841.1| Unknown (protein for MGC:45220) [Homo...    72   1e-11
gi|7670842|gb|AAF66247.1|AF244138_1 hepatocellular carcinoma-ass...    71   2e-11
gi|3193336|gb|AAC19317.1| DBI-related protein [Homo sapiens]           69   7e-11
gi|21312210|ref|NP_081223.1| RIKEN cDNA 1810022C23 [Mus musculus...    69   9e-11
gi|22748743|ref|NP_689555.1| hypothetical protein FLJ38866 [Homo...    69   1e-10
gi|16041166|dbj|BAB69750.1| hypothetical protein [Macaca fascicu...    69   1e-10
gi|21313084|ref|NP_083717.1| RIKEN cDNA 4930453I21 [Mus musculus...    68   1e-10
gi|12839648|dbj|BAB24625.1| unnamed protein product [Mus musculus]     68   1e-10
gi|23015484|gb|ZP_00055259.1| hypothetical protein [Magnetospiri...    68   2e-10
gi|22980441|gb|ZP_00026147.1| hypothetical protein [Ralstonia me...    66   6e-10
gi|27708686|ref|XP_231456.1| similar to chromodomain protein, Y ...    64   2e-09
gi|23059427|ref|ZP_00084395.1| hypothetical protein [Pseudomonas...    64   3e-09
gi|15599526|ref|NP_253020.1| probable enoyl-CoA hydratase/isomer...    64   4e-09
gi|26364942|dbj|BAB26315.2| unnamed protein product [Mus musculus]     64   4e-09
gi|6755026|ref|NP_035998.1| peroxisomal delta3, delta2-enoyl-Coe...    62   8e-09
gi|12805053|gb|AAH01983.1| Similar to peroxisomal delta3, delta2...    62   1e-08
gi|22972769|gb|ZP_00019629.1| hypothetical protein [Chloroflexus...    61   2e-08
gi|16124652|ref|NP_419216.1| enoyl-CoA hydratase/isomerase famil...    60   3e-08
gi|17554946|ref|NP_499156.1| Enoyl-CoA hydratase (31.2 kD) [Caen...    60   4e-08
gi|22989213|ref|ZP_00034270.1| hypothetical protein [Burkholderi...    60   5e-08
gi|15239823|ref|NP_199142.1| enoyl CoA hydratase-like protein; p...    60   5e-08
gi|24375396|ref|NP_719439.1| enoyl-CoA hydratase/isomerase famil...    60   5e-08
gi|17545195|ref|NP_518597.1| PUTATIVE ENOYL-COA HYDRATASE PROTEI...    59   9e-08
gi|23114541|gb|ZP_00099838.1| hypothetical protein [Desulfitobac...    59   9e-08
gi|27383066|ref|NP_774595.1| enoyl-CoA hydratase/isomerase [Brad...    59   1e-07
gi|19703616|ref|NP_603178.1| Enoyl-CoA hydratase [Fusobacterium ...    59   1e-07
gi|22978888|gb|ZP_00024626.1| hypothetical protein [Ralstonia me...    58   2e-07
gi|26990439|ref|NP_745864.1| enoyl-CoA hydratase/isomerase famil...    57   3e-07
gi|27380715|ref|NP_772244.1| blr5604 [Bradyrhizobium japonicum] ...    57   3e-07
gi|15899250|ref|NP_343855.1| 3-hydroxyacyl-CoA dehydrogenase/eno...    57   4e-07
gi|22962936|gb|ZP_00010542.1| hypothetical protein [Rhodopseudom...    56   6e-07
gi|2764829|emb|CAA66096.1| enoyl-CoA isomerase [Escherichia coli]      56   7e-07
gi|23055697|gb|ZP_00081786.1| hypothetical protein [Geobacter me...    55   1e-06
gi|17987805|ref|NP_540439.1| DBI-RELATED PROTEIN 1 [Brucella mel...    55   1e-06
gi|25145438|ref|NP_740932.1| Enoyl-CoA hydratase (27.9 kD) [Caen...    55   1e-06
gi|22956836|gb|ZP_00004570.1| hypothetical protein [Rhodobacter ...    55   1e-06
gi|23106882|gb|ZP_00093222.1| hypothetical protein [Novosphingob...    55   1e-06
gi|15920248|ref|NP_375917.1| 652aa long hypothetical 3-hydroxybu...    55   1e-06
gi|22965332|gb|ZP_00012938.1| hypothetical protein [Rhodopseudom...    55   2e-06
gi|14600413|ref|NP_146927.1| enoyl-CoA hydratase [Aeropyrum pern...    55   2e-06
gi|16079906|ref|NP_390732.1| similar to 3-hydroxbutyryl-CoA dehy...    55   2e-06
gi|11497638|ref|NP_068858.1| 3-hydroxyacyl-CoA dehydrogenase (hb...    55   2e-06
gi|22963728|gb|ZP_00011334.1| hypothetical protein [Rhodopseudom...    54   2e-06
gi|16265300|ref|NP_438092.1| putative enoyl-CoA hydratase protei...    54   3e-06
gi|22978609|gb|ZP_00024356.1| hypothetical protein [Ralstonia me...    54   3e-06
gi|15920273|ref|NP_375942.1| 243aa long hypothetical fatty-acid-...    54   3e-06
gi|14601435|ref|NP_147973.1| 3-hydroxybutyryl-CoA dehydratase [A...    54   4e-06
gi|15899269|ref|NP_343874.1| Enoyl CoA hydratase (paaF-5) [Sulfo...    54   4e-06
gi|15902419|ref|NP_357969.1| Enoyl-CoA hydratase II [Streptococc...    53   5e-06
gi|15900334|ref|NP_344938.1| enoyl-CoA hydratase/isomerase famil...    53   5e-06
gi|15616386|ref|NP_244691.1| enoyl-CoA hydratase; enoyl CoA hydr...    53   5e-06
gi|7522119|pir||T17476 probable enoyl-CoA hydratase (EC 4.2.1.17...    53   6e-06
gi|17549921|ref|NP_509583.1| enoyl-CoA hydratase isomerase [Caen...    53   6e-06
gi|15921809|ref|NP_377478.1| 269aa long hypothetical 3-hydroxybu...    53   6e-06
gi|23098137|ref|NP_691603.1| enoyl CoA hydratase [Oceanobacillus...    53   6e-06
gi|23501315|ref|NP_697442.1| enoyl-CoA hydratase/isomerase famil...    53   6e-06
gi|23026256|ref|ZP_00064742.1| hypothetical protein [Microbulbif...    53   6e-06
gi|27377766|ref|NP_769295.1| bll2655 [Bradyrhizobium japonicum] ...    52   8e-06
gi|22983216|ref|ZP_00028414.1| hypothetical protein [Burkholderi...    52   8e-06
gi|15922748|ref|NP_378417.1| 258aa long hypothetical enoyl-CoA h...    52   8e-06
gi|11269128|pir||T51760 cyclohex-1-ene-1-carboxyl-CoA hydratase ...    52   1e-05
gi|22961498|gb|ZP_00009104.1| hypothetical protein [Rhodopseudom...    52   1e-05
gi|28869906|ref|NP_792525.1| enoyl-CoA hydratase/isomerase famil...    52   1e-05
gi|22536525|ref|NP_687376.1| enoyl-CoA hydratase/isomerase famil...    51   2e-05
gi|28974560|emb|CAD76917.1| putative enoyl CoA-hydratase II [Pse...    51   2e-05
gi|16129355|ref|NP_415912.1| putative enzyme [Escherichia coli K...    51   2e-05
gi|23099575|ref|NP_693041.1| enoyl-CoA hydratase [Oceanobacillus...    51   2e-05
gi|24213898|ref|NP_711379.1| enoyl-CoA hydratase [Leptospira int...    51   2e-05
gi|26988941|ref|NP_744366.1| enoyl-CoA hydratase/isomerase FadB1...    51   2e-05
gi|15614412|ref|NP_242715.1| enoyl-CoA hydratase [Bacillus halod...    51   2e-05
gi|16081562|ref|NP_393918.1| probable enoyl-CoA isomerase [Therm...    51   2e-05
gi|27685041|ref|XP_214465.1| similar to Peroxisomal 3,2-trans-en...    50   3e-05
gi|17546733|ref|NP_520135.1| PUTATIVE ENOYL-COA HYDRATASE PROTEI...    50   3e-05
gi|16125199|ref|NP_419763.1| enoyl-CoA hydratase/isomerase famil...    50   3e-05
gi|12843794|dbj|BAB26117.1| unnamed protein product [Mus musculus]     50   3e-05
gi|13195640|ref|NP_077170.1| RIKEN cDNA 2310005D12 [Mus musculus...    50   3e-05
gi|20846515|ref|XP_133949.1| enoyl Coenzyme A hydratase, short c...    50   3e-05

ALIGNMENTS
>gi|6323314|ref|NP_013386.1| enoyl-CoA isomerase; Eci1p [Saccharomyces cerevisiae]
 gi|1077342|pir||S50369 probable membrane protein YLR284c - yeast (Saccharomyces
           cerevisiae)
 gi|596042|gb|AAB67329.1| L8003.12 gene product
 gi|3643265|gb|AAC83700.1| d3,d2-enoyl CoA isomerase ECI1 [Saccharomyces cerevisiae]
          Length = 280

 Score =  568 bits (1463), Expect = e-161
 Identities = 280/280 (100%), Positives = 280/280 (100%)
 Frame = +1

Query: 1   MSQEIRQNEKISYRIEGPFFIIHLMNPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQ 180
           MSQEIRQNEKISYRIEGPFFIIHLMNPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQ
Sbjct: 1   MSQEIRQNEKISYRIEGPFFIIHLMNPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQ 60

Query: 181 SSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLN 360
           SSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLN
Sbjct: 61  SSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLN 120

Query: 361 GPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMF 540
           GPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMF
Sbjct: 121 GPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMF 180

Query: 541 NKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLKSNH 720
           NKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLKSNH
Sbjct: 181 NKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLKSNH 240

Query: 721 IDAFNKANSVEVNESLKYWVDGEPLKRFRQLGSKQRKHRL 840
           IDAFNKANSVEVNESLKYWVDGEPLKRFRQLGSKQRKHRL
Sbjct: 241 IDAFNKANSVEVNESLKYWVDGEPLKRFRQLGSKQRKHRL 280


>gi|15826830|pdb|1HNO|A Chain A, Crystal Structure Of Peroxisomal Delta3-Delta2-Enoyl-Coa
           Isomerase From Saccharomyces Cerevisiae
 gi|15826831|pdb|1HNU|A Chain A, Crystal Structure Of Peroxisomal Delta3-Delta2-Enoyl-Coa
           Isomerase From Saccharomyces Cerevisiae
          Length = 280

 Score =  566 bits (1459), Expect = e-160
 Identities = 279/280 (99%), Positives = 280/280 (100%)
 Frame = +1

Query: 1   MSQEIRQNEKISYRIEGPFFIIHLMNPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQ 180
           MSQEIRQNEKISYRIEGPFFIIHL+NPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQ
Sbjct: 1   MSQEIRQNEKISYRIEGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQ 60

Query: 181 SSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLN 360
           SSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLN
Sbjct: 61  SSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLN 120

Query: 361 GPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMF 540
           GPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMF
Sbjct: 121 GPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMF 180

Query: 541 NKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLKSNH 720
           NKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLKSNH
Sbjct: 181 NKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLKSNH 240

Query: 721 IDAFNKANSVEVNESLKYWVDGEPLKRFRQLGSKQRKHRL 840
           IDAFNKANSVEVNESLKYWVDGEPLKRFRQLGSKQRKHRL
Sbjct: 241 IDAFNKANSVEVNESLKYWVDGEPLKRFRQLGSKQRKHRL 280


>gi|6324754|ref|NP_014823.1| Delta(3,5)-delta(2,4)-dienoyl-CoA isomerase; Dci1p [Saccharomyces
           cerevisiae]
 gi|2132908|pir||S67072 probable membrane protein YOR180c - yeast (Saccharomyces
           cerevisiae)
 gi|1420435|emb|CAA99389.1| ORF YOR180c [Saccharomyces cerevisiae]
          Length = 271

 Score =  250 bits (639), Expect = 2e-65
 Identities = 126/273 (46%), Positives = 180/273 (65%)
 Frame = +1

Query: 22  NEKISYRIEGPFFIIHLMNPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFS 201
           + ++ Y I GPFFII L++P +LN+L  ED++Y+  LL  A+    V FT++QSSG++FS
Sbjct: 2   SSRVCYHINGPFFIIKLIDPKHLNSLTFEDFVYIALLLHKANDIDSVLFTVLQSSGKYFS 61

Query: 202 SGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLS 381
           SG  F  + K    D      + SK VS   + N++V +AF  H KVL+CCLNGPAIGLS
Sbjct: 62  SGGKFSAVNKLNDGDVTSEVEKVSKLVSAISSPNIFVANAFAIHKKVLVCCLNGPAIGLS 121

Query: 382 AALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYD 561
           A+LVALCDIVYS ND V+LL+PF+NLG + E GT+V+L  K G N+  E ++F+ P  + 
Sbjct: 122 ASLVALCDIVYSQNDSVFLLFPFSNLGFVAEVGTSVTLTQKLGINSANEHMIFSTPVLFK 181

Query: 562 IMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLKSNHIDAFNKA 741
            +     I+KN+ +  +N E FN KVL+++++ ++GLY  S LGMK+LL S       KA
Sbjct: 182 ELI-GTIITKNYQL--TNTETFNEKVLQDIKQNLEGLYPKSVLGMKELLHSEMKQKLIKA 238

Query: 742 NSVEVNESLKYWVDGEPLKRFRQLGSKQRKHRL 840
            ++E N +L +W  GEP KRF+QL    R+H+L
Sbjct: 239 QAMETNGTLPFWASGEPFKRFKQLQEGNRRHKL 271


>gi|28918865|gb|EAA28534.1| hypothetical protein [Neurospora crassa]
          Length = 279

 Score =  156 bits (395), Expect = 3e-37
 Identities = 96/276 (34%), Positives = 149/276 (53%), Gaps = 6/276 (2%)
 Frame = +1

Query: 31  ISYRIEGPFFIIHLMNPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGA 210
           I+   +G   II + N   LNAL    Y  L + L     + +VY T+I  +GR+FS+GA
Sbjct: 7   INVEYKGRLAIITINNEKKLNALTQMQYYDLAQRLREVATHDEVYITLIIGTGRYFSAGA 66

Query: 211 DFK----GIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGL 378
           D       +A ++G   +   +  + W+ NFVA N+ +T AF  H K+LI  LNGP IGL
Sbjct: 67  DVSISRSNVAPSEG--LSSQDAIHNHWLRNFVANNLNITQAFYTHPKILIVGLNGPVIGL 124

Query: 379 SAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKY 558
           SAALV+  D +Y +    +LL PF++LGL+TEGG +  L  + G     E L+ +K    
Sbjct: 125 SAALVSFADFIYCV-PSTFLLTPFSSLGLVTEGGASRGLVQRLGLPKANEALIMSKKITK 183

Query: 559 DIMCENGFISKNF-NMPSSNAEAFNAKVLEELREKV-KGLYLPSCLGMKKLLKSNHIDAF 732
           + + + GF++K F  +     E F   VL+E+ E++   L   S LG+K L++    D +
Sbjct: 184 EELVQTGFVTKCFEEVGKGETEKFKGLVLKEIEERLGDHLVGDSLLGIKSLIRRPERDVY 243

Query: 733 NKANSVEVNESLKYWVDGEPLKRFRQLGSKQRKHRL 840
           +  N  EV   L  +V G P   F ++ S +++H+L
Sbjct: 244 DAQNVAEVMAGLDRFVSGVPQGEFEKIASGKKRHKL 279


>gi|21298626|gb|EAA10771.1| agCP5877 [Anopheles gambiae str. PEST]
          Length = 262

 Score = 92.4 bits (228), Expect = 7e-18
 Identities = 55/165 (33%), Positives = 82/165 (49%)
 Frame = +1

Query: 49  GPFFIIHLMNPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIA 228
           G    + + NP   NAL  + Y  LG+ L  A+++  V+  ++  +G F+SSG D     
Sbjct: 16  GTVLRVTINNPRKKNALNRQAYQELGDTLVAANKDDSVHVVVLTGAGDFYSSGNDMVSAV 75

Query: 229 KAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDI 408
             +G    K          N + R +    AFI+  K+LI  +NGPAIG++A    LCD+
Sbjct: 76  AEEGSVEEKLAR------GNAILREM--VRAFIQFDKLLIAVINGPAIGIAATTALLCDV 127

Query: 409 VYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFN 543
           VY + D  Y   PF  LGL  EG ++ + PL  G +   E L+ N
Sbjct: 128 VYMV-DTAYFYTPFTRLGLCAEGCSSYTFPLLMGRSKASEMLLLN 171


>gi|2226378|gb|AAC19408.1| ACBP/ECHM [Cyprinus carpio]
          Length = 356

 Score = 91.3 bits (225), Expect = 2e-17
 Identities = 73/242 (30%), Positives = 113/242 (46%)
 Frame = +1

Query: 64  IHLMNPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGD 243
           I L  P+  NA+  E Y  L E L+LA ++  V  T+I  SG ++ SG D     K    
Sbjct: 116 IRLNRPEKKNAITVEMYNELIEALDLAGKDSSV-ITVITGSGDYYCSGNDLNNFTKIP-- 172

Query: 244 DTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSIN 423
                  E  +W+    +   YV   +I   K LI  +NGPA+G+S  L+ L D+VY+  
Sbjct: 173 -----EVEYRRWLKMLGSAEEYVK-VYIDFPKPLIGVINGPAVGVSVTLLGLFDVVYA-T 225

Query: 424 DKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNM 603
           +K     PF+ LG   EG ++   P   G     E L+FNK       CE G +++ F  
Sbjct: 226 EKATFHTPFSQLGQSPEGCSSYLFPKIMGAAKASEMLLFNKKLTAAQACEVGLVTEVF-- 283

Query: 604 PSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLKSNHIDAFNKANSVEVNESLKYWVD 783
           P S   +F ++V   L+   K L   S +  K+L+++   +  +  N  EV   ++ W+ 
Sbjct: 284 PES---SFQSEVWTRLKAYAK-LPKNSLVLSKQLIRAVEKEKLHAVNDAEVERLVERWLS 339

Query: 784 GE 789
            E
Sbjct: 340 DE 341


>gi|24654903|ref|NP_612065.1| CG13890-PA [Drosophila melanogaster]
 gi|7292008|gb|AAF47423.1| CG13890-PA [Drosophila melanogaster]
          Length = 262

 Score = 90.5 bits (223), Expect = 3e-17
 Identities = 65/265 (24%), Positives = 117/265 (44%)
 Frame = +1

Query: 46  EGPFFIIHLMNPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGI 225
           +G   +    NP   N +    Y  +  +L   + +  V   +    G  F+SG D    
Sbjct: 14  QGKLLVAKFNNPKKKNCINRVAYQEMTRVLTEVNDDEGVTIVVFTGVGDIFTSGNDLS-- 71

Query: 226 AKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCD 405
             +  DD + +  +++      V        +F+   K+++  +NGPAIG+ A +V LCD
Sbjct: 72  QSSNTDDIDAFFKQSNATFKAMVL-------SFVNCRKIVLALVNGPAIGIGATIVGLCD 124

Query: 406 IVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFI 585
           + +  ++  Y   PF  LGL+ EGG++  LPL  G +   E L+ ++P       +  F+
Sbjct: 125 VAWC-SETTYFYTPFTKLGLVPEGGSSYMLPLILGRSKASEILLLSEPLSAQEAYQFNFV 183

Query: 586 SKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLKSNHIDAFNKANSVEVNES 765
           S+ F      A    + +  +LR+    L   S L  K+L+K   ++   KAN  E  + 
Sbjct: 184 SRIF-----KASELESVIWPKLRQ-YSELPTNSLLQGKRLVKDGFLENLIKANEAECKQL 237

Query: 766 LKYWVDGEPLKRFRQLGSKQRKHRL 840
           L+ +   E  +      S++ K +L
Sbjct: 238 LQQFQHPEFAQAIIDFASRKNKAKL 262


>gi|21483288|gb|AAM52619.1| GH11143p [Drosophila melanogaster]
          Length = 265

 Score = 90.5 bits (223), Expect = 3e-17
 Identities = 65/265 (24%), Positives = 117/265 (44%)
 Frame = +1

Query: 46  EGPFFIIHLMNPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGI 225
           +G   +    NP   N +    Y  +  +L   + +  V   +    G  F+SG D    
Sbjct: 17  QGKLLVAKFNNPKKKNCINRVAYQEMTRVLTEVNDDEGVTIVVFTGVGDIFTSGNDLS-- 74

Query: 226 AKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCD 405
             +  DD + +  +++      V        +F+   K+++  +NGPAIG+ A +V LCD
Sbjct: 75  QSSNTDDIDAFFKQSNATFKAMVL-------SFVNCRKIVLALVNGPAIGIGATIVGLCD 127

Query: 406 IVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFI 585
           + +  ++  Y   PF  LGL+ EGG++  LPL  G +   E L+ ++P       +  F+
Sbjct: 128 VAWC-SETTYFYTPFTKLGLVPEGGSSYMLPLILGRSKASEILLLSEPLSAQEAYQFNFV 186

Query: 586 SKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLKSNHIDAFNKANSVEVNES 765
           S+ F      A    + +  +LR+    L   S L  K+L+K   ++   KAN  E  + 
Sbjct: 187 SRIF-----KASELESVIWPKLRQ-YSELPTNSLLQGKRLVKDGFLENLIKANEAECKQL 240

Query: 766 LKYWVDGEPLKRFRQLGSKQRKHRL 840
           L+ +   E  +      S++ K +L
Sbjct: 241 LQQFQHPEFAQAIIDFASRKNKAKL 265


>gi|17535521|ref|NP_496330.1| Acyl CoA binding protein enoyl-CoA hydratase isomerase family like
           (42.1 kD) [Caenorhabditis elegans]
 gi|7506375|pir||T23980 hypothetical protein R06F6.9 - Caenorhabditis elegans
 gi|3878905|emb|CAA86779.1| Hypothetical protein R06F6.9 [Caenorhabditis elegans]
          Length = 385

 Score = 88.6 bits (218), Expect = 1e-16
 Identities = 71/256 (27%), Positives = 120/256 (46%), Gaps = 3/256 (1%)
 Frame = +1

Query: 31  ISYRIEGPFFIIHLMNPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGA 210
           +S   EG  F I L  P   NAL  E Y  + + LE+++ ++    T+I ++G ++ +G 
Sbjct: 129 LSVTREGKVFKIALNRPKKFNALTLEMYQGIQKALEVSNNDKSTSITVITANGSYYCAGN 188

Query: 211 DFKGIAKAQGDDTNKYP--SETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSA 384
           D      A G    +    + T+K     V    YV +A+I H K LI  +NGPA+G++ 
Sbjct: 189 DLTNFKAAAGGTKEQIADMANTAK-----VIMKDYV-NAYINHEKPLIALINGPAVGIAV 242

Query: 385 ALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDI 564
            ++ + D V +  DK     PFA LG   EG ++ + PL  G+    E L+  K      
Sbjct: 243 TVLGMFDYVIA-TDKASFHTPFAPLGQSPEGVSSYTFPLIMGSLRASEMLLVCKKISAQT 301

Query: 565 MCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGM-KKLLKSNHIDAFNKA 741
             + G +  N  +P +  ++   K +E   +       P  L + KKLL+S H +   + 
Sbjct: 302 AKDYGLV--NEVVPDAEFQSHAQKTVEAFSQ-----LPPETLRINKKLLRSLHKEKLLEV 354

Query: 742 NSVEVNESLKYWVDGE 789
           N++E ++  + W   E
Sbjct: 355 NNIEADQICERWQSKE 370


>gi|15886859|emb|CAC85627.1| Y chromosomal chromodomain protein [Macaca fascicularis]
          Length = 541

 Score = 75.1 bits (183), Expect = 1e-12
 Identities = 55/210 (26%), Positives = 93/210 (44%), Gaps = 3/210 (1%)
 Frame = +1

Query: 157 DVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHS 336
           D    ++ ++G  F  G DF    K   +D NK   E    + NFV       + FI+  
Sbjct: 329 DSKLVLLSAAGSVFCCGLDFGYFVKHLRNDRNKASFEMVNTIKNFV-------NTFIQFK 381

Query: 337 KVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTN 516
           K ++  +NGPAIGL A+++ LCD++++  +K +   P+A  G   +G +TV+ P   G  
Sbjct: 382 KPIVVSVNGPAIGLGASVLPLCDLLWA-TEKAWFQTPYATFGQSPDGCSTVTFPKIMGEA 440

Query: 517 TTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGM 696
           +  E  +  +       C  G +S+ F               EE+  +++ L L + + +
Sbjct: 441 SANEMFIAGRKLTAREACAKGLVSQVF---------LTGTFTEEVMIQIRKLSLHNAVVI 491

Query: 697 ---KKLLKSNHIDAFNKANSVEVNESLKYW 777
              K L++ N      KAN  E     K W
Sbjct: 492 EECKALVRCNIKMELEKANERECEVLRKIW 521


>gi|25777621|ref|NP_736608.1| chromodomain protein, Y chromosome-like isoform c; CDY-like,
           autosomal; testis-specific chromodomain Y-like protein
           [Homo sapiens]
          Length = 309

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 57/212 (26%), Positives = 96/212 (45%), Gaps = 5/212 (2%)
 Frame = +1

Query: 157 DVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHS 336
           D    ++ + G  F  G DF    +   DD  +  ++ ++ + NFV       + FI+  
Sbjct: 97  DSKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFV-------NTFIQFK 149

Query: 337 KVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTN 516
           K +I  +NGPAIGL A+++ LCD+V++ N+K +   P+   G   +G +TV  P   G  
Sbjct: 150 KPIIVAVNGPAIGLGASILPLCDVVWA-NEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGA 208

Query: 517 TTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGM 696
           +  E L+  +       C  G +S+ F  P +    F  +V+  ++E      L SC  +
Sbjct: 209 SANEMLLSGRKLTAQEACGKGLVSQVF-WPGT----FTQEVMVRIKE------LASCNPV 257

Query: 697 -----KKLLKSNHIDAFNKANSVEVNESLKYW 777
                K L++ N      +AN  E     K W
Sbjct: 258 VLEESKALVRCNMKMELEQANERECEVLKKIW 289


>gi|25777619|ref|NP_736607.1| chromodomain protein, Y chromosome-like isoform b; CDY-like,
           autosomal; testis-specific chromodomain Y-like protein
           [Homo sapiens]
          Length = 544

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 57/212 (26%), Positives = 96/212 (45%), Gaps = 5/212 (2%)
 Frame = +1

Query: 157 DVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHS 336
           D    ++ + G  F  G DF    +   DD  +  ++ ++ + NFV       + FI+  
Sbjct: 332 DSKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFV-------NTFIQFK 384

Query: 337 KVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTN 516
           K +I  +NGPAIGL A+++ LCD+V++ N+K +   P+   G   +G +TV  P   G  
Sbjct: 385 KPIIVAVNGPAIGLGASILPLCDVVWA-NEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGA 443

Query: 517 TTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGM 696
           +  E L+  +       C  G +S+ F  P +    F  +V+  ++E      L SC  +
Sbjct: 444 SANEMLLSGRKLTAQEACGKGLVSQVF-WPGT----FTQEVMVRIKE------LASCNPV 492

Query: 697 -----KKLLKSNHIDAFNKANSVEVNESLKYW 777
                K L++ N      +AN  E     K W
Sbjct: 493 VLEESKALVRCNMKMELEQANERECEVLKKIW 524


>gi|4558756|gb|AAD22734.1|AF081258_1 testis-specific chromodomain Y-like protein [Homo sapiens]
 gi|4558758|gb|AAD22735.1|AF081259_1 testis-specific chromodomain Y-like protein [Homo sapiens]
          Length = 598

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 57/212 (26%), Positives = 96/212 (45%), Gaps = 5/212 (2%)
 Frame = +1

Query: 157 DVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHS 336
           D    ++ + G  F  G DF    +   DD  +  ++ ++ + NFV       + FI+  
Sbjct: 386 DSKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFV-------NTFIQFK 438

Query: 337 KVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTN 516
           K +I  +NGPAIGL A+++ LCD+V++ N+K +   P+   G   +G +TV  P   G  
Sbjct: 439 KPIIVAVNGPAIGLGASILPLCDVVWA-NEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGA 497

Query: 517 TTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGM 696
           +  E L+  +       C  G +S+ F  P +    F  +V+  ++E      L SC  +
Sbjct: 498 SANEMLLSGRKLTAQEACGKGLVSQVF-WPGT----FTQEVMVRIKE------LASCNPV 546

Query: 697 -----KKLLKSNHIDAFNKANSVEVNESLKYW 777
                K L++ N      +AN  E     K W
Sbjct: 547 VLEESKALVRCNMKMELEQANERECEVLKKIW 578


>gi|25777617|ref|NP_004815.2| chromodomain protein, Y chromosome-like isoform a; CDY-like,
           autosomal; testis-specific chromodomain Y-like protein
           [Homo sapiens]
          Length = 598

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 57/212 (26%), Positives = 96/212 (45%), Gaps = 5/212 (2%)
 Frame = +1

Query: 157 DVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHS 336
           D    ++ + G  F  G DF    +   DD  +  ++ ++ + NFV       + FI+  
Sbjct: 386 DSKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFV-------NTFIQFK 438

Query: 337 KVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTN 516
           K +I  +NGPAIGL A+++ LCD+V++ N+K +   P+   G   +G +TV  P   G  
Sbjct: 439 KPIIVAVNGPAIGLGASILPLCDVVWA-NEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGA 497

Query: 517 TTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGM 696
           +  E L+  +       C  G +S+ F  P +    F  +V+  ++E      L SC  +
Sbjct: 498 SANEMLLSGRKLTAQEACGKGLVSQVF-WPGT----FTQEVMVRIKE------LASCNPV 546

Query: 697 -----KKLLKSNHIDAFNKANSVEVNESLKYW 777
                K L++ N      +AN  E     K W
Sbjct: 547 VLEESKALVRCNMKMELEQANERECEVLKKIW 578


>gi|4757968|ref|NP_004816.1| Y chromosome chromodomain protein 2; testis-specific chromodomain
           protein Y protein 2 [Homo sapiens]
 gi|27477158|ref|XP_016548.2| similar to Testis-specific chromodomain protein Y protein 2 [Homo
           sapiens]
 gi|27477160|ref|XP_210101.1| similar to Testis-specific chromodomain protein Y protein 2 [Homo
           sapiens]
 gi|20138088|sp|Q9Y6F7|CDY2_HUMAN Testis-specific chromodomain protein Y protein 2
 gi|4558754|gb|AAD22733.1|AF080598_1 testis-specific chromodomain protein Y isoform 2 [Homo sapiens]
          Length = 541

 Score = 73.9 bits (180), Expect = 3e-12
 Identities = 53/216 (24%), Positives = 95/216 (43%), Gaps = 2/216 (0%)
 Frame = +1

Query: 157 DVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHS 336
           D    +  ++G  F  G DF    +   +D N    E    + NFV       + FI+  
Sbjct: 329 DSKLVLFSAAGSVFCCGLDFGYFVRHLRNDRNTASLEMVDTIKNFV-------NTFIQFK 381

Query: 337 KVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTN 516
           K ++  +NGPAIGL A+++ LCD+V++ N+K +   P+   G   +G ++++ P   G  
Sbjct: 382 KPIVVSVNGPAIGLGASILPLCDLVWA-NEKAWFQTPYTTFGQSPDGCSSITFPKMMGKA 440

Query: 517 TTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELRE--KVKGLYLPSCL 690
           +  E L+  +       C  G +S+ F         F  +V+ +++E      + L  C 
Sbjct: 441 SANEMLIAGRKLTAREACAKGLVSQVF-----LTGTFTQEVMIQIKELASYNAIVLEEC- 494

Query: 691 GMKKLLKSNHIDAFNKANSVEVNESLKYWVDGEPLK 798
             K L++ N      +AN  E     K W   + ++
Sbjct: 495 --KALVRCNIKLELEQANERECEVLRKIWSSAQGIE 528


>gi|6753398|ref|NP_034011.1| chromodomain protein, Y chromosome-like [Mus musculus]
 gi|4558760|gb|AAD22736.1|AF081260_1 testis-specific chromodomain Y-like protein [Mus musculus]
 gi|4558762|gb|AAD22737.1|AF081261_1 testis-specific chromodomain Y-like protein [Mus musculus]
          Length = 593

 Score = 73.2 bits (178), Expect = 5e-12
 Identities = 57/212 (26%), Positives = 94/212 (44%), Gaps = 5/212 (2%)
 Frame = +1

Query: 157 DVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHS 336
           D    ++ + G  F  G DF    +   DD  +  ++ +  + NFV       + FI+  
Sbjct: 381 DSKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMADAIRNFV-------NTFIQFK 433

Query: 337 KVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTN 516
           K +I  +NGPAIGL A+++ LCD+V++ N+K +   P+   G   +G +TV  P   G  
Sbjct: 434 KPIIVAVNGPAIGLGASILPLCDVVWA-NEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGA 492

Query: 517 TTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGM 696
           +  E L   +       C  G +S+ F  P +    F  +V+  ++E      L SC  +
Sbjct: 493 SANEMLFSGRKLTAQEACGKGLVSQVF-WPGT----FTQEVMVRIKE------LASCNPV 541

Query: 697 -----KKLLKSNHIDAFNKANSVEVNESLKYW 777
                K L++ N      +AN  E     K W
Sbjct: 542 VLEESKALVRCNMKMELEQANERECEVLKKIW 573


>gi|23137581|ref|ZP_00119286.1| hypothetical protein [Cytophaga hutchinsonii]
          Length = 251

 Score = 72.8 bits (177), Expect = 6e-12
 Identities = 52/178 (29%), Positives = 86/178 (48%)
 Frame = +1

Query: 64  IHLMNPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGD 243
           I +  P+  NAL  E    L +  E A+++  V + I++  G+ F +G D +     QGD
Sbjct: 15  ISMNRPEVYNALTVELIEALIKAFEAAEKDASVEYVILKGEGKGFCAGLDLQWALTIQGD 74

Query: 244 DTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSIN 423
                  +  + V N+  +   +T A    SK +IC L+GPA G  A+LV  CD+V++  
Sbjct: 75  -------QVVELVENYFNK---LTSAIHLCSKPVICLLHGPASGAGASLVLACDLVFAC- 123

Query: 424 DKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNF 597
           ++  L +PF  LGL  + G +  L  + G +  +E L+  K    +    +  I K F
Sbjct: 124 EEGSLAFPFLGLGLQPDTGMSYYLKQRVGYHQAFEWLLEGKKLSVEEALAHKLIQKRF 181


>gi|4757966|ref|NP_004671.1| Y chromosome chromodomain protein 1 isoform b; testis-specific
           chromodomain protein on Y [Homo sapiens]
 gi|3342716|gb|AAC52116.1| testis-specific ChromoDomain Y isoform 1 [Homo sapiens]
          Length = 554

 Score = 72.4 bits (176), Expect = 8e-12
 Identities = 53/216 (24%), Positives = 95/216 (43%), Gaps = 2/216 (0%)
 Frame = +1

Query: 157 DVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHS 336
           D    +  ++G  F  G DF    K   ++ N    E    + NFV       + FI+  
Sbjct: 328 DSKLVLFSAAGSVFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFV-------NTFIQFK 380

Query: 337 KVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTN 516
           K ++  +NGPAIGL A+++ LCD+V++ N+K +   P+   G   +G ++++ P   G  
Sbjct: 381 KPIVVSVNGPAIGLGASILPLCDLVWA-NEKAWFQTPYTTFGQSPDGCSSITFPKMMGKA 439

Query: 517 TTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELRE--KVKGLYLPSCL 690
           +  E L+  +       C  G +S+ F         F  +V+ +++E      + L  C 
Sbjct: 440 SANEMLIAGRKLTAREACAKGLVSQVF-----LTGTFTQEVMIQIKELASYNPIVLEEC- 493

Query: 691 GMKKLLKSNHIDAFNKANSVEVNESLKYWVDGEPLK 798
             K L++ N      +AN  E     K W   + ++
Sbjct: 494 --KALVRCNIKLELEQANERECEVLRKIWSSAQGIE 527


>gi|25453481|ref|NP_733841.1| Y chromosome chromodomain protein 1 isoform a; testis-specific
           chromodomain protein on Y [Homo sapiens]
 gi|20138089|sp|Q9Y6F8|CDY1_HUMAN Testis-specific chromodomain Y protein 1
 gi|4558752|gb|AAD22732.1|AF080597_1 testis-specific chromodomain protein Y isoform 1 [Homo sapiens]
          Length = 540

 Score = 72.4 bits (176), Expect = 8e-12
 Identities = 53/216 (24%), Positives = 95/216 (43%), Gaps = 2/216 (0%)
 Frame = +1

Query: 157 DVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHS 336
           D    +  ++G  F  G DF    K   ++ N    E    + NFV       + FI+  
Sbjct: 328 DSKLVLFSAAGSVFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFV-------NTFIQFK 380

Query: 337 KVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTN 516
           K ++  +NGPAIGL A+++ LCD+V++ N+K +   P+   G   +G ++++ P   G  
Sbjct: 381 KPIVVSVNGPAIGLGASILPLCDLVWA-NEKAWFQTPYTTFGQSPDGCSSITFPKMMGKA 439

Query: 517 TTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELRE--KVKGLYLPSCL 690
           +  E L+  +       C  G +S+ F         F  +V+ +++E      + L  C 
Sbjct: 440 SANEMLIAGRKLTAREACAKGLVSQVF-----LTGTFTQEVMIQIKELASYNPIVLEEC- 493

Query: 691 GMKKLLKSNHIDAFNKANSVEVNESLKYWVDGEPLK 798
             K L++ N      +AN  E     K W   + ++
Sbjct: 494 --KALVRCNIKLELEQANERECEVLRKIWSSAQGIE 527


>gi|8574030|emb|CAB94781.1| dJ1013A10.3 (related to DBI (diazepam binding inhibitor (GABA
           receptor modulator, acyl-Coenzyme A binding protein)))
           [Homo sapiens]
          Length = 374

 Score = 71.6 bits (174), Expect = 1e-11
 Identities = 61/238 (25%), Positives = 102/238 (42%), Gaps = 1/238 (0%)
 Frame = +1

Query: 79  PDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKY 258
           P   NA+  E Y  +   L+ A ++ D   T++  +G ++SSG D             + 
Sbjct: 138 PKKKNAINTEMYHEIMRALKAASKD-DSIITVLTGNGDYYSSGNDLTNFTDIPPGGVEEK 196

Query: 259 PSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYL 438
               +  +  FV         FI   K LI  +NGPA+G+S  L+ L D VY+ +D+   
Sbjct: 197 AKNNAVLLREFVG-------CFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYA-SDRATF 248

Query: 439 LYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNA 618
             PF++LG   EG ++ + P         E L+F K       C  G +++ F  P S  
Sbjct: 249 HTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVF--PDS-- 304

Query: 619 EAFNAKVLEELREKVKGLYLPSCLGM-KKLLKSNHIDAFNKANSVEVNESLKYWVDGE 789
             F  +V   L+   K    P+ L + K++++    +  +  N+ E N     W+  E
Sbjct: 305 -TFQKEVWTRLKAFAK--LPPNALRISKEVIRKREREKLHAVNAEECNVLQGRWLSDE 359


>gi|5174625|ref|NP_006108.1| peroxisomal D3,D2-enoyl-CoA isomerase [Homo sapiens]
 gi|24212663|sp|O75521|PECI_HUMAN Peroxisomal 3,2-trans-enoyl-CoA isomerase (Dodecenoyl-CoA
           delta-isomerase) (D3,D2-enoyl-CoA isomerase)
           (DBI-related protein 1) (DRS-1) (Hepatocellular
           carcinoma-associated antigen 88)
 gi|4929831|gb|AAD34173.1|AF153612_1 peroxisomal D3,D2-enoyl-CoA isomerase [Homo sapiens]
          Length = 359

 Score = 71.6 bits (174), Expect = 1e-11
 Identities = 61/238 (25%), Positives = 102/238 (42%), Gaps = 1/238 (0%)
 Frame = +1

Query: 79  PDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKY 258
           P   NA+  E Y  +   L+ A ++ D   T++  +G ++SSG D             + 
Sbjct: 123 PKKKNAINTEMYHEIMRALKAASKD-DSIITVLTGNGDYYSSGNDLTNFTDIPPGGVEEK 181

Query: 259 PSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYL 438
               +  +  FV         FI   K LI  +NGPA+G+S  L+ L D VY+ +D+   
Sbjct: 182 AKNNAVLLREFVG-------CFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYA-SDRATF 233

Query: 439 LYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNA 618
             PF++LG   EG ++ + P         E L+F K       C  G +++ F  P S  
Sbjct: 234 HTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVF--PDS-- 289

Query: 619 EAFNAKVLEELREKVKGLYLPSCLGM-KKLLKSNHIDAFNKANSVEVNESLKYWVDGE 789
             F  +V   L+   K    P+ L + K++++    +  +  N+ E N     W+  E
Sbjct: 290 -TFQKEVWTRLKAFAK--LPPNALRISKEVIRKREREKLHAVNAEECNVLQGRWLSDE 344


>gi|12803665|gb|AAH02668.1|AAH02668 peroxisomal D3,D2-enoyl-CoA isomerase [Homo sapiens]
          Length = 394

 Score = 71.6 bits (174), Expect = 1e-11
 Identities = 61/238 (25%), Positives = 102/238 (42%), Gaps = 1/238 (0%)
 Frame = +1

Query: 79  PDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKY 258
           P   NA+  E Y  +   L+ A ++ D   T++  +G ++SSG D             + 
Sbjct: 158 PKKKNAINTEMYHEIMRALKAASKD-DSIITVLTGNGDYYSSGNDLTNFTDIPPGGVEEK 216

Query: 259 PSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYL 438
               +  +  FV         FI   K LI  +NGPA+G+S  L+ L D VY+ +D+   
Sbjct: 217 AKNNAVLLREFVG-------CFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYA-SDRATF 268

Query: 439 LYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNA 618
             PF++LG   EG ++ + P         E L+F K       C  G +++ F  P S  
Sbjct: 269 HTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVF--PDS-- 324

Query: 619 EAFNAKVLEELREKVKGLYLPSCLGM-KKLLKSNHIDAFNKANSVEVNESLKYWVDGE 789
             F  +V   L+   K    P+ L + K++++    +  +  N+ E N     W+  E
Sbjct: 325 -TFQKEVWTRLKAFAK--LPPNALRISKEVIRKREREKLHAVNAEECNVLQGRWLSDE 379


>gi|12052810|emb|CAB66577.1| hypothetical protein [Homo sapiens]
          Length = 394

 Score = 71.6 bits (174), Expect = 1e-11
 Identities = 61/238 (25%), Positives = 102/238 (42%), Gaps = 1/238 (0%)
 Frame = +1

Query: 79  PDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKY 258
           P   NA+  E Y  +   L+ A ++ D   T++  +G ++SSG D             + 
Sbjct: 158 PKKKNAINTEMYHEIMRALKAASKD-DSIITVLTGNGDYYSSGNDLTNFTDIPPGGVEEK 216

Query: 259 PSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYL 438
               +  +  FV         FI   K LI  +NGPA+G+S  L+ L D VY+ +D+   
Sbjct: 217 AKNNAVLLREFVG-------CFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYA-SDRATF 268

Query: 439 LYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNA 618
             PF++LG   EG ++ + P         E L+F K       C  G +++ F  P S  
Sbjct: 269 HTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVF--PDS-- 324

Query: 619 EAFNAKVLEELREKVKGLYLPSCLGM-KKLLKSNHIDAFNKANSVEVNESLKYWVDGE 789
             F  +V   L+   K    P+ L + K++++    +  +  N+ E N     W+  E
Sbjct: 325 -TFQKEVWTRLKAFAK--LPPNALRISKEVIRKREREKLHAVNAEECNVLQGRWLSDE 379


>gi|21707485|gb|AAH33841.1| Unknown (protein for MGC:45220) [Homo sapiens]
 gi|21961202|gb|AAH34702.1| Unknown (protein for MGC:21088) [Homo sapiens]
          Length = 364

 Score = 71.6 bits (174), Expect = 1e-11
 Identities = 61/238 (25%), Positives = 102/238 (42%), Gaps = 1/238 (0%)
 Frame = +1

Query: 79  PDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKY 258
           P   NA+  E Y  +   L+ A ++ D   T++  +G ++SSG D             + 
Sbjct: 128 PKKKNAINTEMYHEIMRALKAASKD-DSIITVLTGNGDYYSSGNDLTNFTDIPPGGVEEK 186

Query: 259 PSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYL 438
               +  +  FV         FI   K LI  +NGPA+G+S  L+ L D VY+ +D+   
Sbjct: 187 AKNNAVLLREFVG-------CFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYA-SDRATF 238

Query: 439 LYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNA 618
             PF++LG   EG ++ + P         E L+F K       C  G +++ F  P S  
Sbjct: 239 HTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVF--PDS-- 294

Query: 619 EAFNAKVLEELREKVKGLYLPSCLGM-KKLLKSNHIDAFNKANSVEVNESLKYWVDGE 789
             F  +V   L+   K    P+ L + K++++    +  +  N+ E N     W+  E
Sbjct: 295 -TFQKEVWTRLKAFAK--LPPNALRISKEVIRKREREKLHAVNAEECNVLQGRWLSDE 349


>gi|7670842|gb|AAF66247.1|AF244138_1 hepatocellular carcinoma-associated antigen 88 [Homo sapiens]
          Length = 364

 Score = 71.2 bits (173), Expect = 2e-11
 Identities = 61/238 (25%), Positives = 102/238 (42%), Gaps = 1/238 (0%)
 Frame = +1

Query: 79  PDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKY 258
           P   NA+  E Y  +   L+ A ++ D   T++  +G ++SSG D             + 
Sbjct: 128 PKKKNAINTEMYHEIMRALKAASKD-DSIITVLTGNGDYYSSGNDLTNFTDIPPGGVEEK 186

Query: 259 PSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYL 438
               +  +  FV         FI   K LI  +NGPA+G+S  L+ L D VY+ +D+   
Sbjct: 187 AKNNAVLLREFVG-------CFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYA-SDRATF 238

Query: 439 LYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNA 618
             PF++LG   EG ++ + P         E L+F K       C  G +++ F  P S  
Sbjct: 239 HTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVF--PDS-- 294

Query: 619 EAFNAKVLEELREKVKGLYLPSCLGM-KKLLKSNHIDAFNKANSVEVNESLKYWVDGE 789
             F  +V   L+   K    P+ L + K++++    +  +  N+ E N     W+  E
Sbjct: 295 -TFQKEVWTRLKAFAK--LPPNVLRISKEVIRKREREKLHAVNAEECNVLQGRWLSDE 349


>gi|3193336|gb|AAC19317.1| DBI-related protein [Homo sapiens]
          Length = 364

 Score = 69.3 bits (168), Expect = 7e-11
 Identities = 61/238 (25%), Positives = 101/238 (42%), Gaps = 1/238 (0%)
 Frame = +1

Query: 79  PDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKY 258
           P   NA+  E Y  +   L+ A ++ D   T++  +G  +SSG D             + 
Sbjct: 128 PKKKNAINTEMYHEIMRALKAASKD-DSIITVLTGNGDCYSSGNDLTNFTDIPPGGVEEK 186

Query: 259 PSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYL 438
               +  +  FV         FI   K LI  +NGPA+G+S  L+ L D VY+ +D+   
Sbjct: 187 AKNNAVLLREFVG-------CFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYA-SDRATF 238

Query: 439 LYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNA 618
             PF++LG   EG ++ + P         E L+F K       C  G +++ F  P S  
Sbjct: 239 HTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVF--PDS-- 294

Query: 619 EAFNAKVLEELREKVKGLYLPSCLGM-KKLLKSNHIDAFNKANSVEVNESLKYWVDGE 789
             F  +V   L+   K    P+ L + K++++    +  +  N+ E N     W+  E
Sbjct: 295 -TFQKEVWTRLKAFAK--LPPNVLRISKEVIRKREREKLHAVNAEECNVLQGRWLSDE 349


>gi|21312210|ref|NP_081223.1| RIKEN cDNA 1810022C23 [Mus musculus]
 gi|15928493|gb|AAH14724.1| RIKEN cDNA 1810022C23 gene [Mus musculus]
          Length = 317

 Score = 68.9 bits (167), Expect = 9e-11
 Identities = 65/279 (23%), Positives = 117/279 (41%), Gaps = 1/279 (0%)
 Frame = +1

Query: 7   QEIRQNEKISYRIEGPFFIIHLMNPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSS 186
           ++ R+++ I    E     I    P   NA+  + Y+ +   L+ A  +  V  T+   +
Sbjct: 56  EKARESKDILVTSEDGITKITFNRPTKKNAISFQMYLDIMHALKNASTDNSV-ITVFTGT 114

Query: 187 GRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGP 366
           G ++SSG D K +    G+  +   + T K +  FV       + FI   K L+  +NGP
Sbjct: 115 GDYYSSGNDLKNLINDAGEIQDVVATST-KILREFV-------NCFIDFPKPLVAVVNGP 166

Query: 367 AIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNK 546
           A+G++  ++AL D V++ +D+     PF+ L  I E  +T   P   G     E L+F K
Sbjct: 167 AVGIAVTILALFDAVFA-SDRATFHTPFSQLSQIPEACSTYMFPKIMGPTKAAEMLLFGK 225

Query: 547 PFKYDIMCENGFISKNFNMPSSNAEAF-NAKVLEELREKVKGLYLPSCLGMKKLLKSNHI 723
                     G +++ F   +   E +   K   +L   V  +        K+L++ +  
Sbjct: 226 KLTAREAWAQGLVTEVFPESTFETEVWTRLKTYSKLSPNVMRI-------SKELIRKHEK 278

Query: 724 DAFNKANSVEVNESLKYWVDGEPLKRFRQLGSKQRKHRL 840
                 N+ E   +L+     E  K  R    ++ K +L
Sbjct: 279 QKLYTVNAEECAAALERMPREEYAKALRNFLFRKAKAKL 317


>gi|22748743|ref|NP_689555.1| hypothetical protein FLJ38866 [Homo sapiens]
 gi|21755612|dbj|BAC04720.1| unnamed protein product [Homo sapiens]
          Length = 506

 Score = 68.6 bits (166), Expect = 1e-10
 Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 17/204 (8%)
 Frame = +1

Query: 157 DVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHS 336
           D    ++ + G  F SG D+  +      D  K  +  ++ + +FV        AFI+  
Sbjct: 294 DSKLLLLSAVGSVFCSGLDYSYLIGRLSSDRRKESTRIAEAIRDFVK-------AFIQFK 346

Query: 337 KVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTN 516
           K ++  +NGPA+GL A+++ LCDIV++ ++K +   P+A + L   G ++ + P   G  
Sbjct: 347 KPIVVAINGPALGLGASILPLCDIVWA-SEKAWFQTPYATIRLTPAGCSSYTFPQILGVA 405

Query: 517 TTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAF---------NAKVLEE------- 648
              E L   +       C  G +S+ F   + + E           +A VLEE       
Sbjct: 406 LANEMLFCGRKLTAQEACSRGLVSQVFWPTTFSQEVMLRVKEMASCSAVVLEESKCLVRS 465

Query: 649 -LREKVKGLYLPSCLGMKKLLKSN 717
            L+  ++ +    CL +K+L  S+
Sbjct: 466 FLKSVLEDVNEKECLMLKQLWSSS 489


>gi|16041166|dbj|BAB69750.1| hypothetical protein [Macaca fascicularis]
          Length = 360

 Score = 68.6 bits (166), Expect = 1e-10
 Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 17/204 (8%)
 Frame = +1

Query: 157 DVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHS 336
           D    ++ + G  F SG D+  +      D  K  +  ++ + +FV        AFI+  
Sbjct: 148 DSKLLLLSAVGSVFCSGLDYSYLIGRLSSDRRKESTRIAEAIRDFVK-------AFIQFK 200

Query: 337 KVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTN 516
           K ++  +NGPA+GL A+++ LCDIV++ ++K +   P+A + L   G ++ + P   G  
Sbjct: 201 KPIVVAINGPALGLGASILPLCDIVWA-SEKAWFQTPYATIRLTPAGCSSYTFPQILGVA 259

Query: 517 TTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAF---------NAKVLEE------- 648
              E L   +       C  G +S+ F   + + E           +A VLEE       
Sbjct: 260 LANEMLFCGRKLTAQEACSRGLVSQVFWPTTFSQEVMLRVKEMASCSAVVLEESKCLVRS 319

Query: 649 -LREKVKGLYLPSCLGMKKLLKSN 717
            L+  ++ +    CL +K+L  S+
Sbjct: 320 FLKSVLEDVNEKECLMLKQLWSSS 343


>gi|21313084|ref|NP_083717.1| RIKEN cDNA 4930453I21 [Mus musculus]
 gi|12853802|dbj|BAB29852.1| unnamed protein product [Mus musculus]
          Length = 503

 Score = 68.2 bits (165), Expect = 1e-10
 Identities = 51/202 (25%), Positives = 94/202 (46%)
 Frame = +1

Query: 157 DVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHS 336
           D    ++ + G  F SG D+  +      D  K  +  ++ + +FV        AFI+  
Sbjct: 291 DSKLLLLSAVGSVFCSGLDYSYLIGRLSSDRRKESTRIAEAIRDFVK-------AFIQFK 343

Query: 337 KVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTN 516
           K ++  +NGPA+GL A+++ LCDIV++ ++K +   P+A + L   G ++ + P   G  
Sbjct: 344 KPIVVAINGPALGLGASILPLCDIVWA-SEKAWFQTPYATIRLTPAGCSSYTFPQILGVA 402

Query: 517 TTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGM 696
              E L   +       C  G +S+ F  P++    F+ +V+  ++E      + SC  +
Sbjct: 403 LANEMLFCGRKLTAQEACSRGLVSQVF-WPTT----FSQEVMLRVKE------MASCSAV 451

Query: 697 KKLLKSNHIDAFNKANSVEVNE 762
                   + +F K+   EVNE
Sbjct: 452 VLEESKCLVRSFLKSVLEEVNE 473


>gi|12839648|dbj|BAB24625.1| unnamed protein product [Mus musculus]
          Length = 324

 Score = 68.2 bits (165), Expect = 1e-10
 Identities = 51/202 (25%), Positives = 94/202 (46%)
 Frame = +1

Query: 157 DVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHS 336
           D    ++ + G  F SG D+  +      D  K  +  ++ + +FV        AFI+  
Sbjct: 112 DSKLLLLSAVGSVFCSGLDYSYLIGRLSSDRRKESTRIAEAIRDFVK-------AFIQFK 164

Query: 337 KVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTN 516
           K ++  +NGPA+GL A+++ LCDIV++ ++K +   P+A + L   G ++ + P   G  
Sbjct: 165 KPIVVAINGPALGLGASILPLCDIVWA-SEKAWFQTPYATIRLTPAGCSSYTFPQILGVA 223

Query: 517 TTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGM 696
              E L   +       C  G +S+ F  P++    F+ +V+  ++E      + SC  +
Sbjct: 224 LANEMLFCGRKLTAQEACSRGLVSQVF-WPTT----FSQEVMLRVKE------MASCSAV 272

Query: 697 KKLLKSNHIDAFNKANSVEVNE 762
                   + +F K+   EVNE
Sbjct: 273 VLEESKCLVRSFLKSVLEEVNE 294


>gi|23015484|gb|ZP_00055259.1| hypothetical protein [Magnetospirillum magnetotacticum]
          Length = 254

 Score = 67.8 bits (164), Expect = 2e-10
 Identities = 58/235 (24%), Positives = 101/235 (42%), Gaps = 4/235 (1%)
 Frame = +1

Query: 22  NEKISYRIEGPFFIIHLMNPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFS 201
           +E +   +E    ++ +  PD  NAL GE Y  L E     + + +V   +I  S   FS
Sbjct: 2   SELVLTHVECGVQVVRMNRPDKKNALIGEMYAALAEAFAKGEADDEVGVFLILGSQTDFS 61

Query: 202 SGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKH----SKVLICCLNGPA 369
           +G D                        ++ A +  V D FI+      K ++  + G A
Sbjct: 62  AGNDLPDFL-------------------SWEALSGSVADRFIRAVAGAKKPVVAAVRGAA 102

Query: 370 IGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKP 549
           +G+ + L+  CD+VY+     + + PF NLG++ E G++ ++PL  G     E LM  +P
Sbjct: 103 VGIGSTLLPHCDLVYAAPGTRFHM-PFINLGIVPEAGSSQTMPLLAGHRRAAEMLMLGEP 161

Query: 550 FKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLKS 714
           F  +     G I  N  +P  + E        +L  K + + +     +K L+K+
Sbjct: 162 FGVETAEAVGLI--NGVVPGEDLEETAMAAARKLAAKPRSILMQ----IKTLMKT 210


>gi|22980441|gb|ZP_00026147.1| hypothetical protein [Ralstonia metallidurans]
          Length = 258

 Score = 66.2 bits (160), Expect = 6e-10
 Identities = 55/228 (24%), Positives = 94/228 (41%)
 Frame = +1

Query: 28  KISYRIEGPFFIIHLMNPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSG 207
           +I   +E     + +   D  NAL  + Y  L + +E A  +  V   +IQ+ G  F++G
Sbjct: 4   EIQAGLERGVLTLTISRADKKNALTNDMYGALADAIENASTDASVRVVLIQADGDSFTAG 63

Query: 208 ADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAA 387
            D   I +     T   P E        V R ++   +    +  ++  + G A+G+   
Sbjct: 64  ND---IGEFAAQATGNAPKE------RHVVRFLH---SLANATVPIVAAVQGKAVGVGTT 111

Query: 388 LVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIM 567
           ++  CD V  + D   L+ PF NL L+ E  ++  LPL+ G    +E      P   D  
Sbjct: 112 MLLHCDYVV-LADDAQLITPFVNLALVPEAASSYLLPLRIGHARAFEMFSLGDPLPADTA 170

Query: 568 CENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLK 711
              G    N  +P     A   ++ E++  K  G    S   MK+L++
Sbjct: 171 VAWGI--ANRTVPGDQLRAEGRRIAEKIATKPSG----SLTAMKRLMR 212


>gi|27708686|ref|XP_231456.1| similar to chromodomain protein, Y chromosome-like isoform a;
            CDY-like, autosomal; testis-specific chromodomain Y-like
            protein [Homo sapiens] [Rattus norvegicus]
          Length = 857

 Score = 64.3 bits (155), Expect = 2e-09
 Identities = 53/216 (24%), Positives = 92/216 (42%), Gaps = 5/216 (2%)
 Frame = +1

Query: 157  DVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHS 336
            D    ++ + G  F  G DF         +  +  ++ +  V  FV       + FI+  
Sbjct: 646  DSKLVLLSAIGSVFCFGLDFASFIHCLIRNKKRESTKMAGAVKKFV-------NTFIQFK 698

Query: 337  KVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTN 516
            K +I  +NGPA+GL A+++ LCD+V++ N+K +   P+   G   +G ++ + P   G  
Sbjct: 699  KPIIAAVNGPAMGLGASILPLCDMVWT-NEKAWFQTPYTIFGQSPDGCSSFTFPKIMGEA 757

Query: 517  TTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSC--- 687
            +  E L+  +       C+ G +S+ F       + FN +V+  ++E      L SC   
Sbjct: 758  SANEMLLGGRKLTAQEACDKGLVSQVF-----WPQTFNQEVMIRIKE------LASCNTA 806

Query: 688  --LGMKKLLKSNHIDAFNKANSVEVNESLKYWVDGE 789
                 K LL+ N      + N  E     K W   E
Sbjct: 807  VLEESKALLRFNTKLELEQVNERECTVLKKIWGSAE 842


>gi|23059427|ref|ZP_00084395.1| hypothetical protein [Pseudomonas fluorescens PfO-1]
          Length = 317

 Score = 63.9 bits (154), Expect = 3e-09
 Identities = 49/176 (27%), Positives = 76/176 (43%)
 Frame = +1

Query: 25  EKISYRIEGPFFIIHLMNPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSS 204
           E I    E     + L  PD  NAL    Y  L + L+ A+ + ++   +I  S   F++
Sbjct: 71  EAILLHRERGLLTLRLNRPDKKNALTRAMYSQLADALKQANHDPEINAVLITGSAECFTA 130

Query: 205 GADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSA 384
           G D         D   + PS+    V +F+          ++  K +I  + G A+G+  
Sbjct: 131 GNDI-------ADFIQQPPSDLDSPVFHFMLN-------LLECRKPVIAAVAGAAVGIGT 176

Query: 385 ALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPF 552
            L+  CD+VY   D   L  PF NLGL  E G+++ LP   G     E L+  + F
Sbjct: 177 TLLLHCDLVYVARD-ARLRMPFVNLGLCPEFGSSLILPRLLGQAKASELLLLGEGF 231


>gi|15599526|ref|NP_253020.1| probable enoyl-CoA hydratase/isomerase [Pseudomonas aeruginosa
           PA01]
 gi|11351267|pir||F83104 probable enoyl-CoA hydratase/isomerase PA4330 [imported] -
           Pseudomonas aeruginosa (strain PAO1)
 gi|9950555|gb|AAG07718.1|AE004849_5 probable enoyl-CoA hydratase/isomerase [Pseudomonas aeruginosa
           PAO1]
          Length = 257

 Score = 63.5 bits (153), Expect = 4e-09
 Identities = 67/247 (27%), Positives = 103/247 (41%), Gaps = 3/247 (1%)
 Frame = +1

Query: 22  NEKISYRIEGPFFIIHLMNPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFS 201
           +E I    E     + L   D  NAL    Y  + E L  A  +  V   +I      F+
Sbjct: 2   SELIRVERETGLLTLRLDRQDKKNALTRAMYSRMAEALLEAQADTAVRVVLITGGDACFT 61

Query: 202 SGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLS 381
           SG D         D   + PS     V  F++       A ++  K +I  +NGPA+G+ 
Sbjct: 62  SGNDIL-------DFLEQPPSLRDSPVGRFMS-------ALLEFPKPVIAAVNGPAVGIG 107

Query: 382 AALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYD 561
             L+  CD+V+ +     L  PF NLGL  E G+++ LP   G     E LM  + F  +
Sbjct: 108 TTLLLHCDLVF-VGRNARLKMPFVNLGLTPEFGSSLILPRMLGHAKAAELLMLGQDFSGE 166

Query: 562 IMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKG-LYL-PSC-LGMKKLLKSNHIDAF 732
                G         ++ A    A VLE  R+  +  L+L PS  +  K+L+K+  I+  
Sbjct: 167 QAAAWGL--------ANAALEDGATVLEHARDAARRFLHLAPSAVVESKRLMKAPFIEEL 218

Query: 733 NKANSVE 753
            +  + E
Sbjct: 219 RRVIAEE 225


>gi|26364942|dbj|BAB26315.2| unnamed protein product [Mus musculus]
          Length = 391

 Score = 63.5 bits (153), Expect = 4e-09
 Identities = 64/277 (23%), Positives = 117/277 (42%), Gaps = 2/277 (0%)
 Frame = +1

Query: 7   QEIRQNEKISYRIEGPFFIIHLMNPDNLNALEGEDYIYLGELLELADRNRD-VYFTIIQS 183
           ++ R+++ I    E     I    P   NA+  +  +Y   +L L + + D     +   
Sbjct: 132 EKARESKDILVTSEDGITKITFNRPTKKNAISFQ--MYRDIILALKNASTDNTVMAVFTG 189

Query: 184 SGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNG 363
           +G ++ SG D      A G    +  S  +  + +FV       ++FI   K L+  +NG
Sbjct: 190 TGDYYCSGNDLTNFTSATGG-IEEAASNGAVLLRDFV-------NSFIDFPKPLVAVVNG 241

Query: 364 PAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFN 543
           PA+G+S  L+ L D V++ +D+     PF+ LG   E  ++ + P   G+    E L+F 
Sbjct: 242 PAVGISVTLLGLFDAVFA-SDRATFHTPFSQLGQSPEACSSYTFPKMMGSAKAAEMLLFG 300

Query: 544 KPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGM-KKLLKSNH 720
           K          G +++ F  P S    F  +V   L+   K    P+ + + K+L++ N 
Sbjct: 301 KKLTAREAWAQGLVTEVF--PES---TFETEVWTRLKTYAK--LPPNAMRISKELIRKNE 353

Query: 721 IDAFNKANSVEVNESLKYWVDGEPLKRFRQLGSKQRK 831
            +     N+ E       W+  E +       S++ K
Sbjct: 354 KEKLYAVNAEECTTLQARWLSEECMNAIMSFVSRKPK 390


>gi|6755026|ref|NP_035998.1| peroxisomal delta3, delta2-enoyl-Coenzyme A isomerase [Mus
           musculus]
 gi|12585328|sp|Q9WUR2|PECI_MOUSE Peroxisomal 3,2-trans-enoyl-CoA isomerase (Dodecenoyl-CoA
           delta-isomerase) (D3,D2-enoyl-CoA isomerase)
 gi|4929833|gb|AAD34174.1|AF153613_1 peroxisomal D3,D2-enoyl-CoA isomerase [Mus musculus]
          Length = 358

 Score = 62.4 bits (150), Expect = 8e-09
 Identities = 61/277 (22%), Positives = 114/277 (41%), Gaps = 2/277 (0%)
 Frame = +1

Query: 7   QEIRQNEKISYRIEGPFFIIHLMNPDNLNALEGEDYIYLGELLELADRNRD-VYFTIIQS 183
           ++ R+++ I    E     I    P   NA+  +  +Y   +L L + + D     +   
Sbjct: 99  EKARESKDILVTSEDGITKITFNRPTKKNAISFQ--MYRDIILALKNASTDNTVMAVFTG 156

Query: 184 SGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNG 363
           +G ++ SG D      A G    +  S  +  + +FV       ++FI   K L+  +NG
Sbjct: 157 TGDYYCSGNDLTNFTSATGG-IEEAASNGAVLLRDFV-------NSFIDFPKPLVAVVNG 208

Query: 364 PAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFN 543
           PA+G+S  L+ L D V++ +D+     PF+ LG   E  ++ + P   G+    E L+F 
Sbjct: 209 PAVGISVTLLGLFDAVFA-SDRATFHTPFSQLGQSPEACSSYTFPKMMGSAKAAEMLLFG 267

Query: 544 KPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGM-KKLLKSNH 720
           K          G +++ F   +   E +        R K      P+ + + K+L++ N 
Sbjct: 268 KKLTAREAWAQGLVTEVFPESTFETEVWT-------RLKTYANVPPNAMRISKELIRQNE 320

Query: 721 IDAFNKANSVEVNESLKYWVDGEPLKRFRQLGSKQRK 831
            +     N+ E       W+  E +       S++ K
Sbjct: 321 KEKLYAVNAEECTTLQARWLSEECMNAIMSFVSRKPK 357


>gi|12805053|gb|AAH01983.1| Similar to peroxisomal delta3, delta2-enoyl-Coenzyme A isomerase
           [Mus musculus]
          Length = 358

 Score = 62.0 bits (149), Expect = 1e-08
 Identities = 63/277 (22%), Positives = 117/277 (42%), Gaps = 2/277 (0%)
 Frame = +1

Query: 7   QEIRQNEKISYRIEGPFFIIHLMNPDNLNALEGEDYIYLGELLELADRNRD-VYFTIIQS 183
           ++ ++++ I    E     I    P   NA+  +  +Y   +L L + + D     +   
Sbjct: 99  EKAQESKDILVTSEDGITKITFNRPTKKNAISFQ--MYRDIILALKNASTDNTVMAVFTG 156

Query: 184 SGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNG 363
           +G ++ SG D      A G    +  S  +  + +FV       ++FI   K L+  +NG
Sbjct: 157 TGDYYCSGNDLTNFTSATGG-IEEAASNGAVLLRDFV-------NSFIDFPKPLVAVVNG 208

Query: 364 PAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFN 543
           PA+G+S  L+ L D V++ +D+     PF+ LG   E  ++ + P   G+    E L+F 
Sbjct: 209 PAVGISVTLLGLFDAVFA-SDRATFHTPFSQLGQSPEACSSYTFPKMMGSAKAAEMLLFG 267

Query: 544 KPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGM-KKLLKSNH 720
           K          G +++ F  P S    F  +V   L+   K    P+ + + K+L++ N 
Sbjct: 268 KKLTAREAWAQGLVTEVF--PES---TFETEVWTRLKTYAK--LPPNAMRISKELIRKNE 320

Query: 721 IDAFNKANSVEVNESLKYWVDGEPLKRFRQLGSKQRK 831
            +     N+ E       W+  E +       S++ K
Sbjct: 321 KEKLYAVNAEECTTLQARWLSEECMNAIMSFVSRKPK 357


>gi|22972769|gb|ZP_00019629.1| hypothetical protein [Chloroflexus aurantiacus]
          Length = 298

 Score = 60.8 bits (146), Expect = 2e-08
 Identities = 51/177 (28%), Positives = 74/177 (41%)
 Frame = +1

Query: 7   QEIRQNEKISYRIEGPFFIIHLMNPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSS 186
           Q + +   +   IEGP  I+ L  P  LNAL       L   LE  D +  +   II  +
Sbjct: 39  QRMSEESLVLSTIEGPIAILTLNRPQALNALSPALIDDLIRHLEACDADDTIRVIIITGA 98

Query: 187 GRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGP 366
           GR F++GAD K +A A   D            S  +AR   +        K +I  +NG 
Sbjct: 99  GRAFAAGADIKAMANATPID---------MLTSGMIARWARIAAV----RKPVIAAVNGY 145

Query: 367 AIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLM 537
           A+G    L  +CDI+ + ++      P  NLG+I   G T  L    G     E ++
Sbjct: 146 ALGGGCELAMMCDIIIA-SENAQFGQPEINLGIIPGAGGTQRLTRALGPYRAMELIL 201


>gi|16124652|ref|NP_419216.1| enoyl-CoA hydratase/isomerase family protein [Caulobacter
           crescentus CB15]
 gi|25291796|pir||D87298 enoyl-CoA hydratase/isomerase family protein [imported] -
           Caulobacter crescentus
 gi|13421556|gb|AAK22384.1| enoyl-CoA hydratase/isomerase family protein [Caulobacter
           crescentus CB15]
          Length = 256

 Score = 60.5 bits (145), Expect = 3e-08
 Identities = 40/167 (23%), Positives = 76/167 (45%)
 Frame = +1

Query: 25  EKISYRIEGPFFIIHLMNPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSS 204
           + ++ +I+     + L  P+  NAL    Y  L + LE A+++  +   + Q  G  F++
Sbjct: 3   DHVTVQIDAGVMTLTLARPEKKNALSNAMYGVLADSLEAAEKDPTIRVVVFQGDGDSFTA 62

Query: 205 GADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSA 384
           G D +  A      T  +  E  + V+ F+        A    ++ L+  + G A+G+  
Sbjct: 63  GNDLQDFA---AQATGAFSGE--RHVTRFLK-------ALANATRPLVAAVQGQAVGVGT 110

Query: 385 ALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTY 525
            ++  CD+V+ ++    L  PF NL L+ E  ++  LP + G    Y
Sbjct: 111 TMLLHCDLVF-VSPDARLTTPFVNLALVPEAASSWLLPARVGHARAY 156


>gi|17554946|ref|NP_499156.1| Enoyl-CoA hydratase (31.2 kD) [Caenorhabditis elegans]
 gi|461983|sp|P34559|ECHM_CAEEL Probable enoyl-CoA hydratase, mitochondrial
 gi|482212|pir||S41006 enoyl-CoA hydratase (EC 4.2.1.17), mitochondrial - Caenorhabditis
           elegans
 gi|3879490|emb|CAA81594.1| Hypothetical protein T05G5.6 [Caenorhabditis elegans]
          Length = 288

 Score = 60.1 bits (144), Expect = 4e-08
 Identities = 64/239 (26%), Positives = 104/239 (43%), Gaps = 1/239 (0%)
 Frame = +1

Query: 61  IIHLMNPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQG 240
           +I L  P  LNAL  +    L + LE+ D ++ V   +I  S R F++GAD K +     
Sbjct: 47  LIKLNRPKALNALCAQLMTELADALEVLDTDKSVGAIVITGSERAFAAGADIKEMT---- 102

Query: 241 DDTNKYPSETS-KWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYS 417
              N++ +  S  ++SN+ A    V+D      K +I  +NG A+G    L  +CDI+Y+
Sbjct: 103 --NNEFATTFSGSFLSNWTA----VSDV----KKPVIAAVNGFALGGGNELAMMCDIIYA 152

Query: 418 INDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNF 597
             +K     P  N+G I   G T       G +   E  +           E+G +SK F
Sbjct: 153 -GEKARFGQPEINIGTIPGAGGTQRWARAAGKSFAMEVCLTGNHVTAQEAKEHGIVSKIF 211

Query: 598 NMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLKSNHIDAFNKANSVEVNESLKY 774
             P+        K+ E++ ++      P  + M K       +A NKA  + + E L +
Sbjct: 212 --PADQVVGEAVKLGEKIADQ-----SPLIVQMAK-------EAVNKAYELTLQEGLHF 256


>gi|22989213|ref|ZP_00034270.1| hypothetical protein [Burkholderia fungorum]
          Length = 256

 Score = 59.7 bits (143), Expect = 5e-08
 Identities = 51/191 (26%), Positives = 80/191 (41%)
 Frame = +1

Query: 79  PDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKY 258
           PD  NA+    Y  + + L  A  +  V   +I+ S   FS+G D +   KA        
Sbjct: 21  PDKKNAITAAMYQTMADALVQAHGDAAVRAVLIRGSAGIFSAGNDLEDFMKAP------- 73

Query: 259 PSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYL 438
           P   +  V  F+        A     K ++  + GPA+G+   L+  CD+VY + D    
Sbjct: 74  PMGENAPVFQFLR-------AISSAEKPVVASVAGPAVGIGTTLLLHCDLVY-VADTASF 125

Query: 439 LYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNA 618
             PFA LGL  E  +++ L    G     E L+  + F        GF+  N  +P++  
Sbjct: 126 SLPFAQLGLCPEAASSLLLQRVSGYQAAAEKLLLGEAFDAAEAQRMGFV--NRVLPAAEV 183

Query: 619 EAFNAKVLEEL 651
           +AF A    +L
Sbjct: 184 DAFAASQAAKL 194


>gi|15239823|ref|NP_199142.1| enoyl CoA hydratase-like protein; protein id: At5g43280.1,
           supported by cDNA: gi_18252832 [Arabidopsis thaliana]
 gi|10177390|dbj|BAB10591.1| enoyl CoA hydratase-like protein [Arabidopsis thaliana]
 gi|18252833|gb|AAL62343.1| enoyl CoA hydratase-like protein [Arabidopsis thaliana]
 gi|25084271|gb|AAN72209.1| enoyl CoA hydratase-like protein [Arabidopsis thaliana]
          Length = 278

 Score = 59.7 bits (143), Expect = 5e-08
 Identities = 48/200 (24%), Positives = 83/200 (41%), Gaps = 5/200 (2%)
 Frame = +1

Query: 25  EKISYRIEGPFFIIHLMNPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSS 204
           E I    +   F + +  P +LNAL  + +I   + L   D+N DV   I+  +G+ F S
Sbjct: 10  EIIRKNTDSSVFHLIINRPSHLNALSLDFFIEFPKALSSLDQNPDVSVIILSGAGKHFCS 69

Query: 205 GADFKGIA-----KAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPA 369
           G D   ++      + G+D  +   +  + + +  A       A  +  K +I  ++G  
Sbjct: 70  GIDLNSLSSISTQSSSGNDRGRSSEQLRRKIKSMQA----AITAIEQCRKPVIAAIHGAC 125

Query: 370 IGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKP 549
           IG    L+  CDI Y   D  + +    +L ++ + GT   LP   G     E  +  + 
Sbjct: 126 IGGGVDLITACDIRYCSEDAFFSIKE-VDLAIVADLGTLQRLPSIVGYANAMELALTARR 184

Query: 550 FKYDIMCENGFISKNFNMPS 609
           F      + G +SK F   S
Sbjct: 185 FSGSEAKDLGLVSKVFGSKS 204


>gi|24375396|ref|NP_719439.1| enoyl-CoA hydratase/isomerase family protein [Shewanella oneidensis
           MR-1]
 gi|24350230|gb|AAN56883.1|AE015823_5 enoyl-CoA hydratase/isomerase family protein [Shewanella oneidensis
           MR-1]
          Length = 245

 Score = 59.7 bits (143), Expect = 5e-08
 Identities = 49/190 (25%), Positives = 77/190 (40%)
 Frame = +1

Query: 61  IIHLMNPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQG 240
           II    PD  NAL+   Y  L E L   + + D+   ++      F+SG D     K   
Sbjct: 14  IISFNRPDKRNALDLNMYKQLTEYLIEGEADNDIRAFMLHGEDNCFTSGNDVADFLK-NS 72

Query: 241 DDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSI 420
           D    +P+             V      ++  K L+  ++G A+G+   ++  CD+VY+ 
Sbjct: 73  DLGPNHPA-------------VRFLFCLLELKKPLVAAVSGAAVGIGTTVLLHCDLVYAD 119

Query: 421 NDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFN 600
           N   + L PF NL L+ E G ++ LP   G     E L+  + F  +       I+    
Sbjct: 120 NSAKFQL-PFVNLALVPEAGASLLLPELVGYQKAAELLLLGESFDANTAHRLNIINDVIA 178

Query: 601 MPSSNAEAFN 630
                A AFN
Sbjct: 179 QEELLAYAFN 188


>gi|17545195|ref|NP_518597.1| PUTATIVE ENOYL-COA HYDRATASE PROTEIN [Ralstonia solanacearum]
 gi|17427486|emb|CAD14004.1| PUTATIVE ENOYL-COA HYDRATASE PROTEIN [Ralstonia solanacearum]
          Length = 254

 Score = 58.9 bits (141), Expect = 9e-08
 Identities = 49/182 (26%), Positives = 80/182 (43%)
 Frame = +1

Query: 82  DNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYP 261
           D  NA+    Y  L + L  A+ +  V   ++      F++G D +   K         P
Sbjct: 20  DKKNAITAAMYQALADALVAAEDDPAVRVIVLAGHESAFTAGNDLEDFMKHP-------P 72

Query: 262 SETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLL 441
            +    V  F+        A    +K L+  ++G A+G+   ++  CD+VY+ +D   L 
Sbjct: 73  KDEHAPVHRFLR-------AISAATKPLVASVSGVAVGVGTTMLLHCDLVYA-SDTARLS 124

Query: 442 YPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAE 621
            PFA LGL  E  +++ LP   G +   E L+F +PF      E G +  N  +P +  E
Sbjct: 125 MPFAQLGLCPEAASSLLLPQLAGYHRAAEKLLFGEPFDAGEARELGLV--NRVLPVAELE 182

Query: 622 AF 627
           AF
Sbjct: 183 AF 184


>gi|23114541|gb|ZP_00099838.1| hypothetical protein [Desulfitobacterium hafniense]
          Length = 255

 Score = 58.9 bits (141), Expect = 9e-08
 Identities = 47/192 (24%), Positives = 84/192 (43%)
 Frame = +1

Query: 16  RQNEKISYRIEGPFFIIHLMNPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRF 195
           +QN+ I+Y I        +  P+  NA++ +  + + ++LE  D++ DV   I++  G  
Sbjct: 9   KQNDGIAYVI--------INKPERRNAMDADLMVKMVQVLEQLDQDTDVRVIILKGQGDH 60

Query: 196 FSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIG 375
           FSSG D K      G +     S  +     F AR +       +  K +I  + G A+G
Sbjct: 61  FSSGGDLKA---GVGGEPTVENSRAALQKFIFAARKIQ------EMEKPVIAMVKGYAVG 111

Query: 376 LSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFK 555
              +L  +CDIV++  D  +    F  +G+  E G  + +P+  G     E     +   
Sbjct: 112 GGMSLAMVCDIVFASEDAKF-SSNFLKVGITPEMGAMLLMPMMMGAQRAKELWFTGRVID 170

Query: 556 YDIMCENGFISK 591
                E GF+++
Sbjct: 171 AAEAKELGFVNR 182


>gi|27383066|ref|NP_774595.1| enoyl-CoA hydratase/isomerase [Bradyrhizobium japonicum]
 gi|27356240|dbj|BAC53220.1| enoyl-CoA hydratase/isomerase [Bradyrhizobium japonicum]
          Length = 256

 Score = 58.5 bits (140), Expect = 1e-07
 Identities = 46/202 (22%), Positives = 84/202 (41%), Gaps = 3/202 (1%)
 Frame = +1

Query: 25  EKISYRIEGPFFIIHLMNPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSS 204
           E +     G    + L  PD  NAL    Y  L + +E A+ +      +I+  G  F++
Sbjct: 3   EHVRIENNGGILTLTLARPDKKNALTDAMYGKLADAIESAEFDPSARVILIRGEGDMFTA 62

Query: 205 GAD---FKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIG 375
           G D   F  +A  +        SE S+ V  F+        +  + ++ L+  + G A+G
Sbjct: 63  GNDVGEFAAVASGK--------SEGSRNVIRFI-------QSLARCTRPLVAAVQGRAVG 107

Query: 376 LSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFK 555
           +   ++  CD+V  + D   L  PF +L L+ E  +++ +P + G    YE     +   
Sbjct: 108 VGTTMLLHCDLVV-LADNAQLSTPFVSLALVPEAASSLLMPARIGYARAYEMFALGETVP 166

Query: 556 YDIMCENGFISKNFNMPSSNAE 621
                E G  ++   +   +AE
Sbjct: 167 AKAALEWGLANRVVPLDKLDAE 188


>gi|19703616|ref|NP_603178.1| Enoyl-CoA hydratase [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|19713724|gb|AAL94477.1| Enoyl-CoA hydratase [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 264

 Score = 58.5 bits (140), Expect = 1e-07
 Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 3/192 (1%)
 Frame = +1

Query: 25  EKISYRIEGPFFIIHLMNPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSS 204
           EK+ Y +E    ++ +    NLNA++ +    L  +++ A+++ +V   +++ + + FS+
Sbjct: 4   EKLIYTVENGIAVVTMNYMKNLNAIDEQMADELMYVVDTAEKDPNVKVMVLKGAEKAFSA 63

Query: 205 GAD---FKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIG 375
           G D   F  + +A G+            +   + +   V D   K SK++I  + G A G
Sbjct: 64  GGDIGYFYQLIQAGGEVN----------MDGLIGKVGTVADGMKKMSKIVITSVCGAAAG 113

Query: 376 LSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFK 555
              +L    D +   +D    +  F NLGL+ + G T  L    G   T E     +P  
Sbjct: 114 AGVSLALGGDFII-CSDNAKFILAFVNLGLVPDTGGTYLLSKAIGVPRTMELAATGRPVS 172

Query: 556 YDIMCENGFISK 591
            +   E GF+ K
Sbjct: 173 AEEAKELGFVYK 184


>gi|22978888|gb|ZP_00024626.1| hypothetical protein [Ralstonia metallidurans]
          Length = 258

 Score = 57.8 bits (138), Expect = 2e-07
 Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 3/173 (1%)
 Frame = +1

Query: 82  DNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAK---AQGDDTN 252
           D  NA+    Y  + + L  A+ +  V   +I+     F++G D +   K     G D  
Sbjct: 20  DKKNAITAAMYQTMADALRAAETDAAVRVIVIEGKPEVFTAGNDIEDFLKRPPTNGADGA 79

Query: 253 KYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKV 432
             P      V  F+        A  + +K ++  ++G A+G+   L+  CD+VY+ ++  
Sbjct: 80  PAP------VFQFL-------QAISRATKPIVASVSGAAVGIGTTLLLHCDLVYA-SETA 125

Query: 433 YLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISK 591
            L  PFA LGL  E  +++ LP   G     E L+  + F      E G ++K
Sbjct: 126 KLALPFAQLGLCPEAASSLLLPRMVGYQRAAEKLLLGEAFSAQEAFEIGLVTK 178


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 19, 2003 11:08 PM
  Number of letters in database: 441,946,756
  Number of sequences in database:  1,375,764
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 643,614,690
Number of Sequences: 1375764
Number of extensions: 13409078
Number of successful extensions: 34390
Number of sequences better than 10.0: 541
Number of HSP's better than 10.0 without gapping: 33261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34222
length of database: 441,946,756
effective HSP length: 122
effective length of database: 274,103,548
effective search space used: 43308360584
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)