MedBlast Result

MedBlast(0.8) Results

Direct References
Indirect References
Options
BLASTN
BLASTX

Direct References:

Hit	Evalue	SeqType	References
Z72944	0.0	N
X85807	0.0	N	Yeast 1995 Nov;11(14):1421-7
X57185	0.0	N	J Cell Biol 1991 Apr;113(1):1-12 Gene 1994 Oct 11;148(1):59-66 Mol Biol Cell 1997 Jan;8(1):97-108
Z72946	1e-106	N
NP_011675	1e-113	P
P27476	1e-113	P	Yeast 1995 Jul;11(9):865-71
A39205	1e-113	P
CAA40472	1e-113	P
CAA59817	1e-113	P
CAA97173	1e-113	P
AAB22809	1e-113	P
AAB04133	8e-47	P
NP_593531	1e-46	P
P41891	1e-46	P
CAB86413	1e-46	P
S55785	4e-46	P
CAA88179	4e-46	P
EAA34626	2e-39	P
CAA41023	4e-28	P
S15348	4e-28	P
P28644	4e-28	P	Genomics 1997 May 1;41(3):444-52
S23780	7e-24	P
AAA33486	7e-24	P
Q08935	9e-24	P
S20069	9e-24	P
CAA43427	9e-24	P
S53492	2e-23	P
BAA06520	2e-23	P
NP_194208	2e-23	P
Q04836	2e-23	P
S28057	2e-23	P
CAA46347	2e-23	P
AAA32860	2e-23	P
AAA18378	2e-23	P
CAA22986	2e-23	P
CAB79387	2e-23	P
1921382A	2e-23	P
AAK95304	2e-23	P
AAN28804	2e-23	P
BAA06521	2e-23	P
S49030	2e-23	P
CAA43420	2e-23	P
AAA18379	2e-23	P
S20940	2e-23	P
S50765	3e-23	P
AAA33039	3e-23	P
CAD18921	5e-23	P
S71556	5e-23	P
AAA81023	5e-23	P
T06817	6e-23	P
CAA74889	6e-23	P
AAG13900	6e-23	P
AAL39067	8e-23	P
NP_199836	1e-22	P
BAB09396	1e-22	P
AAK63972	1e-22	P
AAL76138	1e-22	P
T05727	1e-22	P
CAA11893	1e-22	P
P49313	2e-22	P
S26203	2e-22	P
CAA46234	2e-22	P
Q08937	4e-22	P
S20070	4e-22	P	Genomics 1997 May 1;41(3):444-52
CAA43428	4e-22	P
P19682	4e-22	P
S12109	4e-22	P
CAA37880	4e-22	P
T05725	7e-22	P
CAA06469	7e-22	P
P19683	9e-22	P
S22548	9e-22	P
CAA40364	9e-22	P
CAA37885	9e-22	P
AAM66970	1e-21	P
NP_181259	1e-21	P
Q9ZUU4	1e-21	P
A84790	1e-21	P
AAC98043	1e-21	P
AAK43982	1e-21	P
AAK82513	1e-21	P
AAL15235	1e-21	P
AAM15222	1e-21	P
T06232	1e-21	P
BAA22411	1e-21	P
P49314	2e-21	P	Genomics 1997 May 1;41(3):444-52
S26204	2e-21	P
CAA46233	2e-21	P
BAC10140	3e-21	P
AAL82527	1e-20	P

References Summary:

Skala J, Nawrocki A, Goffeau A
The sequence of a 27 kb segment on the right arm of chromosome VII from Saccharomyces cerevisiae reveals MOL1, NAT2, RPL30B, RSR1, CYS4, PEM1/CHO2, NSR1 genes and ten new open reading frames.
Yeast 1995 Nov;11(14):1421-7
PMID: 8585325
Lee WC, Xue ZX, Melese T
The NSR1 gene encodes a protein that specifically binds nuclear localization sequences and has two RNA recognition motifs.
J Cell Biol 1991 Apr;113(1):1-12
PMID: 1706724
Gamberi C, Contreas G, Romanelli MG, Morandi C
Analysis of the yeast NSR1 gene and protein domain comparison between Nsr1 and human hnRNP type A1.
Gene 1994 Oct 11;148(1):59-66
PMID: 7926838
McGrath KE, Smothers JF, Dadd CA, Madireddi MT, Gorovsky MA, Allis CD
An abundant nucleolar phosphoprotein is associated with ribosomal DNA in Tetrahymena macronuclei.
Mol Biol Cell 1997 Jan;8(1):97-108
PMID: 9017598
Rose M, Kiesau P, Proft M, Entian KD
Sequence and functional analysis of a 7.2 kb DNA fragment containing four open reading frames located between RPB5 and CDC28 on the right arm of chromosome II.
Yeast 1995 Jul;11(9):865-71
PMID: 7483850
Jackson FR, Banfi S, Guffanti A, Rossi E
A novel zinc finger-containing RNA-binding protein conserved from fruitflies to humans.
Genomics 1997 May 1;41(3):444-52
PMID: 9169144

Indirect References:

Hit	Evalue	SeqType	References
Z72944	0.0	N	nsr1p EMBO J 2001 Oct 1;20(19):5480-90 J Biol Chem 2000 Nov 17;275(46):36181-8 Nucleic Acids Res 1994 Nov 25;22(23):4906-13 Nucleic Acids Res 2001 Jul 15;29(14):2938-49 nsr1 Nucleic Acids Res 1995 Jun 11;23(11):1912-8 Plant Cell 1996 Mar;8(3):417-28 Plant Physiol 1997 Jun;114(2):643-52 Genetics 1992 Nov;132(3):665-73 J Cell Biol 1993 Dec;123(5):1081-91 Yeast 2000 Sep 15;16(12):1147-59 EMBO J 2001 Oct 1;20(19):5480-90 Proc Natl Acad Sci U S A 1992 Nov 1;89(21):10355-9 EMBO J 1997 Jun;16(12):3572-86 Mol Cell Biol 1992 Sep;12(9):3865-71 J Biol Chem 2000 Nov 17;275(46):36181-8 Chromosoma 1997 Jun;105(7-8):542-52 Nucleic Acids Res 1994 Nov 25;22(23):4906-13 Yeast 1995 Nov;11(14):1421-7 J Cell Biol 1991 Apr;113(1):1-12 J Biol Chem 1992 Aug 15;267(23):16252-8 J Biol Chem 1992 Aug 15;267(23):16259-65 Gene 1994 Oct 11;148(1):59-66 J Cell Biol 1992 Nov;119(4):737-47 Eur J Cell Biol 1993 Oct;62(1):13-21 EMBO J 1992 Feb;11(2):673-82 J Cell Biol 1994 Nov;127(3):623-39 she5 Cell 1996 Mar 8;84(5):687-97 J Cell Sci 1999 May;112 ( Pt 10):1511-8 Curr Biol 1999 Jun 3;9(11):569-78 she5p Mol Biol Cell 2001 Sep;12(9):2567-77 Curr Biol 1999 Jun 3;9(11):569-78
X85807	0.0	N	nsr1p (...) nsr1 (...) she5 (...) she5p (...)
X57185	0.0	N	nsr1p (...) nsr1 (...) she5 (...) she5p (...)
Z72946	1e-106	N	nsr1p (...) nsr1 (...) she5 (...) she5p (...)
NP_011675	1e-113	P	nsr1p (...) nsr1 (...) she5 (...) she5p (...)
P27476	1e-113	P
A39205	1e-113	P
CAA40472	1e-113	P	nsr1p (...) nsr1 (...) she5 (...) she5p (...)
CAA59817	1e-113	P	nsr1p (...) nsr1 (...) she5 (...) she5p (...)
CAA97173	1e-113	P	nsr1p (...) nsr1 (...) she5 (...) she5p (...)
AAB22809	1e-113	P
AAB04133	8e-47	P	nap (-)
NP_593531	1e-46	P	gar2 Nucleic Acids Res 1995 Jun 11;23(11):1912-8 Chromosoma 1997 Jun;105(7-8):532-41 Chromosoma 1997 Jun;105(7-8):542-52 Mol Biol Cell 1998 Aug;9(8):2011-23
P41891	1e-46	P
CAB86413	1e-46	P
S55785	4e-46	P
CAA88179	4e-46	P	gar2 (...)
EAA34626	2e-39	P
CAA41023	4e-28	P
S15348	4e-28	P
P28644	4e-28	P
S23780	7e-24	P
AAA33486	7e-24	P	nbp Nucleic Acids Res 1992 Jan 25;20(2):359-64 J Cell Biol 1992 May;117(3):473-82
Q08935	9e-24	P
S20069	9e-24	P
CAA43427	9e-24	P
S53492	2e-23	P
BAA06520	2e-23	P
NP_194208	2e-23	P	at4g24770 (-)
Q04836	2e-23	P
S28057	2e-23	P
CAA46347	2e-23	P	rnp-t Plant Mol Biol 1992 Dec;20(5):833-8
AAA32860	2e-23	P	rbp31 (-)
AAA18378	2e-23	P
CAA22986	2e-23	P
CAB79387	2e-23	P	at4g24770 (-)
1921382A	2e-23	P
AAK95304	2e-23	P
AAN28804	2e-23	P
BAA06521	2e-23	P
S49030	2e-23	P
CAA43420	2e-23	P	rnp-d (-)
AAA18379	2e-23	P
S20940	2e-23	P
S50765	3e-23	P
AAA33039	3e-23	P
CAD18921	5e-23	P	rbp33 (-)
S71556	5e-23	P
AAA81023	5e-23	P	cebp-1 Plant Mol Biol 1996 Jul;31(4):751-9
T06817	6e-23	P
CAA74889	6e-23	P	ctrnp (-)
AAG13900	6e-23	P
AAL39067	8e-23	P
NP_199836	1e-22	P	at5g50250 (-)
BAB09396	1e-22	P
AAK63972	1e-22	P
AAL76138	1e-22	P
T05727	1e-22	P
CAA11893	1e-22	P
P49313	2e-22	P
S26203	2e-22	P
CAA46234	2e-22	P
Q08937	4e-22	P
S20070	4e-22	P
CAA43428	4e-22	P
P19682	4e-22	P
S12109	4e-22	P
CAA37880	4e-22	P
T05725	7e-22	P
CAA06469	7e-22	P
P19683	9e-22	P
S22548	9e-22	P
CAA40364	9e-22	P
CAA37885	9e-22	P
AAM66970	1e-21	P
NP_181259	1e-21	P	at2g37220 (-)
Q9ZUU4	1e-21	P
A84790	1e-21	P
AAC98043	1e-21	P	at2g37220 (-)
AAK43982	1e-21	P	at2g37220 (-)
AAK82513	1e-21	P
AAL15235	1e-21	P	at2g37220 (-)
AAM15222	1e-21	P	at2g37220 (-)
T06232	1e-21	P
BAA22411	1e-21	P
P49314	2e-21	P
S26204	2e-21	P
CAA46233	2e-21	P
BAC10140	3e-21	P
AAL82527	1e-20	P

References Summary:

Verheggen C, Mouaikel J, Thiry M, Blanchard JM, Tollervey D, Bordonne R, Lafontaine DL, Bertrand E
Box C/D small nucleolar RNA trafficking involves small nucleolar RNP proteins, nucleolar factors and a novel nuclear domain.
EMBO J 2001 Oct 1;20(19):5480-90
PMID: 11574480
Edwards TK, Saleem A, Shaman JA, Dennis T, Gerigk C, Oliveros E, Gartenberg MR, Rubin EH
Role for nucleolin/Nsr1 in the cellular localization of topoisomerase I.
J Biol Chem 2000 Nov 17;275(46):36181-8
PMID: 10967121
Lin JJ, Zakian VA
Isolation and characterization of two Saccharomyces cerevisiae genes that encode proteins that bind to (TG1-3)n single strand telomeric DNA in vitro.
Nucleic Acids Res 1994 Nov 25;22(23):4906-13
PMID: 7800479
Wu K, Wu P, Aris JP
Nucleolar protein Nop12p participates in synthesis of 25S rRNA in Saccharomyces cerevisiae.
Nucleic Acids Res 2001 Jul 15;29(14):2938-49
PMID: 11452019
Gulli MP, Girard JP, Zabetakis D, Lapeyre B, Melese T, Caizergues-Ferrer M
gar2 is a nucleolar protein from Schizosaccharomyces pombe required for 18S rRNA and 40S ribosomal subunit accumulation.
Nucleic Acids Res 1995 Jun 11;23(11):1912-8
PMID: 7596817
Bogre L, Jonak C, Mink M, Meskiene I, Traas J, Ha DT, Swoboda I, Plank C, Wagner E, Heberle-Bors E, Hirt H
Developmental and cell cycle regulation of alfalfa nucMs1, a plant homolog of the yeast Nsr1 and mammalian nucleolin.
Plant Cell 1996 Mar;8(3):417-28
PMID: 8721748
Tong CG, Reichler S, Blumenthal S, Balk J, Hsieh HL, Roux SJ
Light regulation of the abundance of mRNA encoding a nucleolin-like protein localized in the nucleoli of pea nuclei.
Plant Physiol 1997 Jun;114(2):643-52
PMID: 9193096
Liu H, Krizek J, Bretscher A
Construction of a GAL1-regulated yeast cDNA expression library and its application to the identification of genes whose overexpression causes lethality in yeast.
Genetics 1992 Nov;132(3):665-73
PMID: 1468625
Yan C, Melese T
Multiple regions of NSR1 are sufficient for accumulation of a fusion protein within the nucleolus.
J Cell Biol 1993 Dec;123(5):1081-91
PMID: 8245119
Zabetakis D
Inheritance of suppressors of the drug sensitivity of a NSR1 deleted yeast strain.
Yeast 2000 Sep 15;16(12):1147-59
PMID: 10953086
Gu Z, Moerschell RP, Sherman F, Goldfarb DS
NIP1, a gene required for nuclear transport in yeast.
Proc Natl Acad Sci U S A 1992 Nov 1;89(21):10355-9
PMID: 1332047
Yan C, Leibowitz N, Melese T
A role for the divergent actin gene, ACT2, in nuclear pore structure and function.
EMBO J 1997 Jun;16(12):3572-86
PMID: 9218799
Lee WC, Zabetakis D, Melese T
NSR1 is required for pre-rRNA processing and for the proper maintenance of steady-state levels of ribosomal subunits.
Mol Cell Biol 1992 Sep;12(9):3865-71
PMID: 1508189
Leger-Silvestre I, Gulli MP, Noaillac-Depeyre J, Faubladier M, Sicard H, Caizergues-Ferrer M, Gas N
Ultrastructural changes in the Schizosaccharomyces pombe nucleolus following the disruption of the gar2+ gene, which encodes a nucleolar protein structurally related to nucleolin.
Chromosoma 1997 Jun;105(7-8):542-52
PMID: 9211982
Kondo K, Inouye M
Yeast NSR1 protein that has structural similarity to mammalian nucleolin is involved in pre-rRNA processing.
J Biol Chem 1992 Aug 15;267(23):16252-8
PMID: 1644811
Kondo K, Kowalski LR, Inouye M
Cold shock induction of yeast NSR1 protein and its role in pre-rRNA processing.
J Biol Chem 1992 Aug 15;267(23):16259-65
PMID: 1644812
Russell ID, Tollervey D
NOP3 is an essential yeast protein which is required for pre-rRNA processing.
J Cell Biol 1992 Nov;119(4):737-47
PMID: 1429834
Xue Z, Shan X, Lapeyre B, Melese T
The amino terminus of mammalian nucleolin specifically recognizes SV40 T-antigen type nuclear localization sequences.
Eur J Cell Biol 1993 Oct;62(1):13-21
PMID: 8269971
Girard JP, Lehtonen H, Caizergues-Ferrer M, Amalric F, Tollervey D, Lapeyre B
GAR1 is an essential small nucleolar RNP protein required for pre-rRNA processing in yeast.
EMBO J 1992 Feb;11(2):673-82
PMID: 1531632
Benton BM, Zang JH, Thorner J
A novel FK506- and rapamycin-binding protein (FPR3 gene product) in the yeast Saccharomyces cerevisiae is a proline rotamase localized to the nucleolus.
J Cell Biol 1994 Nov;127(3):623-39
PMID: 7525596
Jansen RP, Dowzer C, Michaelis C, Galova M, Nasmyth K
Mother cell-specific HO expression in budding yeast depends on the unconventional myosin myo4p and other cytoplasmic proteins.
Cell 1996 Mar 8;84(5):687-97
PMID: 8625407
Munchow S, Sauter C, Jansen RP
Association of the class V myosin Myo4p with a localised messenger RNA in budding yeast depends on She proteins.
J Cell Sci 1999 May;112 ( Pt 10):1511-8
PMID: 10212145
Beach DL, Salmon ED, Bloom K
Localization and anchoring of mRNA in budding yeast.
Curr Biol 1999 Jun 3;9(11):569-78
PMID: 10359695
Beach DL, Bloom K
ASH1 mRNA localization in three acts.
Mol Biol Cell 2001 Sep;12(9):2567-77
PMID: 11553699
Gulli MP, Faubladier M, Sicard H, Caizergues-Ferrer M
Mitosis-specific phosphorylation of gar2, a fission yeast nucleolar protein structurally related to nucleolin.
Chromosoma 1997 Jun;105(7-8):532-41
PMID: 9211981
Sicard H, Faubladier M, Noaillac-Depeyre J, Leger-Silvestre I, Gas N, Caizergues-Ferrer M
The role of the Schizosaccharomyces pombe gar2 protein in nucleolar structure and function depends on the concerted action of its highly charged N terminus and its RNA-binding domains.
Mol Biol Cell 1998 Aug;9(8):2011-23
PMID: 9693363
Cook WB, Walker JC
Identification of a maize nucleic acid-binding protein (NBP) belonging to a family of nuclear-encoded chloroplast proteins.
Nucleic Acids Res 1992 Jan 25;20(2):359-64
PMID: 1346929
Stochaj U, Silver PA
A conserved phosphoprotein that specifically binds nuclear localization sequences is involved in nuclear import.
J Cell Biol 1992 May;117(3):473-82
PMID: 1572892
Bar-Zvi D, Shagan T, Schindler U, Cashmore AR
RNP-T, a ribonucleoprotein from Arabidopsis thaliana, contains two RNP-80 motifs and a novel acidic repeat arranged in an alpha-helix conformation.
Plant Mol Biol 1992 Dec;20(5):833-8
PMID: 1463823
Maxson JM, Woodson WR
Cloning of a DNA-binding protein that interacts with the ethylene-responsive enhancer element of the carnation GST1 gene.
Plant Mol Biol 1996 Jul;31(4):751-9
PMID: 8806406

Options:

Limit of E-value: 1e-20
Limit of Length: 100000
Limit of references returned each search: 40
Limit of retry times: 3
Direct references: Yes
Indirect references: Yes
Allow symbol with hyphen: Yes
Use stop word list: Yes
Thesaurus:
- Saccharomyces cerevisiae (Version: 20021123.0)




 
BLASTN 2.2.5 [Nov-16-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
RID: 1048253135-019212-25473
Query= ORFN:YGR159C NSR1 SGDID:S0003391, Chr VII from 806414-807658,
reverse complement
         (1245 letters)

Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences) 
           1,707,549 sequences; 7,931,913,529 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|1323270|emb|Z72944.1|SCYGR159C S.cerevisiae chromosome VII re...  1742   0.0  
gi|1045249|emb|X85807.1|SCCVIIRA S.cerevisiae chromosome VII 27k...  1742   0.0  
gi|4057|emb|X57185.1|SCNSR1 Yeast NSR1 gene for nuclear localiza...  1742   0.0  
gi|1323273|emb|Z72946.1|SCYGR161C S.cerevisiae chromosome VII re...   393   e-106
gi|26185912|emb|AL929071.6| Mouse DNA sequence from clone RP24-4...    54   5e-04
gi|23304091|emb|AL671190.10| Mouse DNA sequence from clone RP23-...    50   0.008
gi|28867175|gb|AC124366.4| Mus musculus chromosome 1 clone RP24-...    46   0.13 
gi|28850220|gb|AC122280.4| Mus musculus chromosome 17 clone RP23...    46   0.13 
gi|28416941|ref|NM_006938.2| Homo sapiens small nuclear ribonucl...    46   0.13 
gi|705364|gb|L36188.1|HUMSNRP04 Homo sapiens small nuclear ribon...    46   0.13 
gi|27707205|ref|XM_231251.1| Rattus norvegicus similar to rab6 G...    46   0.13 
gi|27683254|ref|XM_219867.1| Rattus norvegicus similar to nucleo...    46   0.13 
gi|15021955|gb|AC078819.24| Homo sapiens 12q BAC RP11-490H24 (Ro...    46   0.13 
gi|27368251|gb|AY196903.1| Homo sapiens interleukin 1 receptor a...    46   0.13 
gi|24022447|gb|AC122022.4| Mus musculus chromosome 5 clone RP24-...    46   0.13 
gi|22597615|gb|AC091038.9| Homo sapiens chromosome 18, clone RP1...    46   0.13 
gi|21844711|gb|AC098889.3| Mus musculus clone RP23-122O10, compl...    46   0.13 
gi|21717100|gb|AC103579.10| Mus Musculus Strain C57BL6/J Chromos...    46   0.13 
gi|15778814|gb|AC084382.1| Mus musculus clone RP23-5K17, complet...    46   0.13 
gi|21431403|gb|AC106037.9| Homo sapiens chromosome 18, clone RP1...    46   0.13 
gi|21322222|gb|AC002410.2| Homo sapiens BAC clone CTA-264L19 fro...    46   0.13 
gi|17998570|gb|AC093022.4| Mus Musculus Chromosome 14 Strain C57...    46   0.13 
gi|13027370|gb|AC068627.16| Mus Musculus Chromosome 5 RP23-389F6...    46   0.13 
gi|17223153|gb|AC020632.16| Homo sapiens 3 BAC RP11-333H9 (Roswe...    46   0.13 
gi|29125156|emb|AL590069.5| Human DNA sequence from clone RP11-3...    46   0.13 
gi|14718389|gb|AC016724.11| Homo sapiens BAC clone RP11-339F22 f...    46   0.13 
gi|28881786|emb|AL772171.7| Mouse DNA sequence from clone RP23-3...    46   0.13 
gi|28317370|tpe|BN000002.1|HSA000002 TPA: Homo sapiens complete ...    46   0.13 
gi|27801673|emb|AL929011.9| Mouse DNA sequence from clone RP23-5...    46   0.13 
gi|12804598|gb|BC001721.1|BC001721 Homo sapiens, small nuclear r...    46   0.13 
gi|23589193|dbj|AK116605.1| Ciona intestinalis cDNA, clone:cits0...    46   0.13 
gi|6651043|gb|AF131866.1|AF131866 Mus musculus BAC 271B7 chromos...    46   0.13 
gi|23380943|emb|AL807744.6| Mouse DNA sequence from clone RP23-1...    46   0.13 
gi|22204660|emb|AL805933.7| Mouse DNA sequence from clone RP23-3...    46   0.13 
gi|22798379|emb|AL807816.7| Mouse DNA sequence from clone RP23-1...    46   0.13 
gi|21211803|emb|AL591967.11| Mouse DNA sequence from clone RP23-...    46   0.13 
gi|338264|gb|J03798.1|HUMSNRNPD Human autoantigen small nuclear ...    46   0.13 
gi|18152564|emb|AL592215.12| Mouse DNA sequence from clone RP23-...    46   0.13 
gi|29124192|gb|AC104329.22| Mus musculus chromosome 3 clone rp23...    44   0.51 
gi|29029236|gb|AC093524.4| Homo sapiens chromosome 16 clone RP11...    44   0.51 
gi|28973807|gb|AC092141.4| Homo sapiens chromosome 16 clone RP11...    44   0.51 
gi|28933546|gb|AC024590.8| Homo sapiens chromosome 16 clone RP11...    44   0.51 
gi|28829751|gb|AC116305.2| Dictyostelium discoideum chromosome 2...    44   0.51 
gi|22296697|gb|AC091043.12| Homo sapiens chromosome 18, clone RP...    44   0.51 
gi|28913006|gb|AC093200.3| Homo sapiens chromosome 8 clone CTD-2...    44   0.51 
gi|28882131|gb|AC130184.4| Macaca mulatta clone CH250-513J21, co...    44   0.51 
gi|28850231|gb|AC131748.3| Mus musculus chromosome 12 clone RP23...    44   0.51 
gi|28626894|gb|AC124439.4| Mus musculus chromosome 9 clone RP24-...    44   0.51 
gi|28604204|gb|AC122246.5| Mus musculus chromosome 1 clone RP23-...    44   0.51 
gi|28604190|gb|AC126674.3| Mus musculus chromosome 19 clone RP23...    44   0.51 
gi|28604184|gb|AC128702.4| Mus musculus chromosome 9 clone RP24-...    44   0.51 
gi|20848421|ref|XM_126891.1| Mus musculus similar to set gene (L...    44   0.51 
gi|28461105|gb|AC129604.3| Mus musculus chromosome 7 clone RP23-...    44   0.51 
gi|28460956|gb|AC069120.9| Homo sapiens chromosome 8, clone RP11...    44   0.51 
gi|28416285|gb|AC123949.5| Mus musculus chromosome 14 clone RP23...    44   0.51 
gi|28394428|gb|AC126255.3| Mus musculus chromosome 18 clone RP24...    44   0.51 
gi|22833056|gb|AE003449.2| Drosophila melanogaster chromosome X ...    44   0.51 
gi|28144450|gb|AC124381.4| Mus musculus chromosome 15 clone RP24...    44   0.51 
gi|27923689|gb|AC104866.10| Mus musculus, clone RP23-268C14, com...    44   0.51 
gi|27901945|gb|AC122828.3| Mus musculus chromosome 13 clone RP23...    44   0.51 
gi|27753856|gb|AC125203.3| Mus musculus chromosome 19 clone RP23...    44   0.51 
gi|27658225|gb|AC100810.17| Homo sapiens chromosome 8, clone CTD...    44   0.51 
gi|27552636|gb|AC125340.3| Mus musculus chromosome 1 clone RP24-...    44   0.51 
gi|27452915|gb|AF274573.4| Homo sapiens chromosome X clone RP11-...    44   0.51 
gi|27228808|gb|AC068947.17| Mus Musculus Strain C57BL6/J Chromos...    44   0.51 
gi|26801341|gb|AC124184.3| Mus musculus chromosome 10 clone RP23...    44   0.51 
gi|26553415|gb|AC073167.12| Homo sapiens chromosome 15, clone RP...    44   0.51 
gi|26024143|gb|AC122465.4| Mus musculus chromosome 13 clone RP24...    44   0.51 
gi|26006504|gb|AC093248.3| Homo sapiens chromosome 5 clone RP11-...    44   0.51 
gi|25901136|gb|AC123790.4| Mus musculus chromosome 1 clone RP24-...    44   0.51 
gi|25710421|gb|AC122016.4| Mus musculus chromosome 16 clone RP24...    44   0.51 
gi|25450138|gb|AC079068.11| Homo sapiens chromosome 15, clone RP...    44   0.51 
gi|25189031|gb|AC121991.3| Mus musculus chromosome 13 clone RP24...    44   0.51 
gi|25046695|gb|AC123853.2| Mus musculus chromosome 19 clone RP23...    44   0.51 
gi|25046668|gb|AC122445.3| Mus musculus chromosome 17 clone RP24...    44   0.51 
gi|25020269|ref|XM_207843.1| Mus musculus LOC280478 (LOC280478),...    44   0.51 
gi|25013358|gb|AC079959.25| Mus musculus chromosome 12 clone rp2...    44   0.51 
gi|24961584|gb|AC092856.26| Mus musculus chromosome 10 clone rp2...    44   0.51 
gi|24961508|gb|AC084323.28| Mus musculus chromosome 2 clone rp23...    44   0.51 
gi|24796224|gb|AY066698.1| Schmidtea mediterranea clone HB.2.8h ...    44   0.51 
gi|24111074|gb|AC104620.5| Homo sapiens BAC clone RP11-294O2 fro...    44   0.51 
gi|24431663|gb|AC097015.2| Homo sapiens chromosome 3 clone RP11-...    44   0.51 
gi|24270683|gb|AC087329.10| Mus Musculus Strain C57BL6/J chromos...    44   0.51 
gi|24137501|gb|AC104632.8| Mus musculus chromosome 3 clone rp23-...    44   0.51 
gi|24111076|gb|AC122898.4| Mus musculus chromosome 1 clone RP23-...    44   0.51 
gi|23683307|gb|AC117259.3| Mus musculus chromosome 12 clone RP24...    44   0.51 
gi|23592183|gb|AC124358.4| Mus musculus chromosome 3 clone RP24-...    44   0.51 
gi|3845341|gb|AE001434.1| Plasmodium falciparum 3D7 chromosome 2...    44   0.51 
gi|23499682|gb|AC121568.3| Mus musculus chromosome 15 clone RP23...    44   0.51 
gi|23462921|gb|AC122011.3| Mus musculus chromosome 10 clone RP24...    44   0.51 
gi|23355205|gb|AC117509.9| Homo sapiens 3 BAC RP11-31B16 (Roswel...    44   0.51 
gi|23334875|gb|AC121971.3| Mus musculus chromosome 7 clone RP24-...    44   0.51 
gi|23130713|gb|AC122905.3| Mus musculus chromosome 10 clone RP23...    44   0.51 
gi|22857844|gb|AC121793.3| Mus musculus chromosome 9 clone RP23-...    44   0.51 
gi|22830446|gb|AC121941.3| Mus musculus chromosome 2 clone RP24-...    44   0.51 
gi|22795199|gb|AC084324.8| Mus musculus Strain C57BL6/J chromoso...    44   0.51 
gi|22726144|gb|AC103849.3| Homo sapiens chromosome 8, clone RP11...    44   0.51 
gi|15789221|gb|AC009773.27| Homo sapiens 12 BAC RP11-82C23 (Rosw...    44   0.51 
gi|22165041|gb|AC090480.11| Mus Musculus Strain C57BL6/J chromos...    44   0.51 
gi|22138677|gb|AC113999.3| Mus musculus chromosome 16 clone RP23...    44   0.51 

ALIGNMENTS
>gi|1323270|emb|Z72944.1|SCYGR159C S.cerevisiae chromosome VII reading frame ORF YGR159c
          Length = 2607

 Score = 1742 bits (879), Expect = 0.0
 Identities = 893/900 (99%)
 Strand = Plus / Minus

                                                                        
Query: 346  tcttctagctctgattcatcctcatcttcatcttctgatagcgaaagcgaaaaggaagag 405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1290 tcttctagctctgattcatcctcatcttcatcttctgatagcgaaagcgaaaaggaagag 1231

                                                                        
Query: 406  tctaacgataagaaacgtaaatctgaggacgccgaagaagaagaagacgaagagtcttcc 465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1230 tctaacgataagaaacgtaaatctgaggacgccgaagaagaagaagacgaagagtcttcc 1171

                                                                        
Query: 466  aacaagaagcnnnnnnntgaagaaaccgaagaaccagctactattttcgttggtagacta 525
            ||||||||||       |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1170 aacaagaagcaaaaaaatgaagaaaccgaagaaccagctactattttcgttggtagacta 1111

                                                                        
Query: 526  tcgtggtctattgatgacgaatggttgaagaaggaattcgaacacatcggtggtgtcatt 585
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1110 tcgtggtctattgatgacgaatggttgaagaaggaattcgaacacatcggtggtgtcatt 1051

                                                                        
Query: 586  ggtgccagagttatttatgaaagaggtaccgatagatctcgtggttatggttacgttgat 645
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1050 ggtgccagagttatttatgaaagaggtaccgatagatctcgtggttatggttacgttgat 991

                                                                        
Query: 646  tttgaaaacaaatcttatgctgaaaaggccattcaagaaatgcaaggtaaggaaattgat 705
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990  tttgaaaacaaatcttatgctgaaaaggccattcaagaaatgcaaggtaaggaaattgat 931

                                                                        
Query: 706  ggtagaccaatcaactgtgatatgtccacaagcaagccagctggtaacaacgatcgtgcc 765
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930  ggtagaccaatcaactgtgatatgtccacaagcaagccagctggtaacaacgatcgtgcc 871

                                                                        
Query: 766  aagaaattcggtgataccccatctgaaccatctgacactttgttcttgggtaacttatct 825
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870  aagaaattcggtgataccccatctgaaccatctgacactttgttcttgggtaacttatct 811

                                                                        
Query: 826  ttcaatgctgacagagacgctattttcgaattattcgctaaacacggtgaagttgtttcc 885
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810  ttcaatgctgacagagacgctattttcgaattattcgctaaacacggtgaagttgtttcc 751

                                                                        
Query: 886  gtccgtatcccaacacatccagaaactgaacaaccaaaaggtttcggttatgttcaattc 945
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750  gtccgtatcccaacacatccagaaactgaacaaccaaaaggtttcggttatgttcaattc 691

                                                                        
Query: 946  tccaacatggaggacgccaagaaggctctagacgctttacaaggtgaatacattgacaac 1005
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690  tccaacatggaggacgccaagaaggctctagacgctttacaaggtgaatacattgacaac 631

                                                                        
Query: 1006 agaccagttagattagacttctcttctccaagaccaaacaacgatggtggtcgtggcggt 1065
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630  agaccagttagattagacttctcttctccaagaccaaacaacgatggtggtcgtggcggt 571

                                                                        
Query: 1066 agccgtggttttggtggtcgtggcggtggtcgtggcggtaaccgtggattcggtggtcgt 1125
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570  agccgtggttttggtggtcgtggcggtggtcgtggcggtaaccgtggattcggtggtcgt 511

                                                                        
Query: 1126 ggtggcgctcgcggtggccgtggcggtttcagaccatctggttctggtgctaatactgct 1185
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510  ggtggcgctcgcggtggccgtggcggtttcagaccatctggttctggtgctaatactgct 451

                                                                        
Query: 1186 ccattgggcagatcaagaaataccgcttctttcgctggttcaaagaaaacatttgattaa 1245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450  ccattgggcagatcaagaaataccgcttctttcgctggttcaaagaaaacatttgattaa 391



 Score =  208 bits (105), Expect = 2e-50
 Identities = 105/105 (100%)
 Strand = Plus / Minus

                                                                        
Query: 189  ttctgaatcctcttcttcatcgtcttctgacagcgaaagtgaagctgaaaccaagaagga 248
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1447 ttctgaatcctcttcttcatcgtcttctgacagcgaaagtgaagctgaaaccaagaagga 1388

                                                         
Query: 249  agaatccaaggattcctcttcctcttcctctgactcttcttccga 293
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1387 agaatccaaggattcctcttcctcttcctctgactcttcttccga 1343



 Score =  196 bits (99), Expect = 6e-47
 Identities = 99/99 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1    atggctaagactactaaagtaaaaggtaacaagaaggaagttaaggcttccaaacaagcc 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1635 atggctaagactactaaagtaaaaggtaacaagaaggaagttaaggcttccaaacaagcc 1576

                                                   
Query: 61   aaagaagaaaaagctaaggccgtctcttcctcttcctcc 99
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 1575 aaagaagaaaaagctaaggccgtctcttcctcttcctcc 1537



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 360  ttcatcctcatcttcatcttc 380
            |||||||||||||||||||||
Sbjct: 1531 ttcatcctcatcttcatcttc 1511



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 235  gaaaccaagaaggaagaatc 254
            ||||||||||||||||||||
Sbjct: 1317 gaaaccaagaaggaagaatc 1298


>gi|1045249|emb|X85807.1|SCCVIIRA S.cerevisiae chromosome VII 27kbp right arm segment
          Length = 26677

 Score = 1742 bits (879), Expect = 0.0
 Identities = 893/900 (99%)
 Strand = Plus / Minus

                                                                         
Query: 346   tcttctagctctgattcatcctcatcttcatcttctgatagcgaaagcgaaaaggaagag 405
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26302 tcttctagctctgattcatcctcatcttcatcttctgatagcgaaagcgaaaaggaagag 26243

                                                                         
Query: 406   tctaacgataagaaacgtaaatctgaggacgccgaagaagaagaagacgaagagtcttcc 465
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26242 tctaacgataagaaacgtaaatctgaggacgccgaagaagaagaagacgaagagtcttcc 26183

                                                                         
Query: 466   aacaagaagcnnnnnnntgaagaaaccgaagaaccagctactattttcgttggtagacta 525
             ||||||||||       |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26182 aacaagaagcaaaaaaatgaagaaaccgaagaaccagctactattttcgttggtagacta 26123

                                                                         
Query: 526   tcgtggtctattgatgacgaatggttgaagaaggaattcgaacacatcggtggtgtcatt 585
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26122 tcgtggtctattgatgacgaatggttgaagaaggaattcgaacacatcggtggtgtcatt 26063

                                                                         
Query: 586   ggtgccagagttatttatgaaagaggtaccgatagatctcgtggttatggttacgttgat 645
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26062 ggtgccagagttatttatgaaagaggtaccgatagatctcgtggttatggttacgttgat 26003

                                                                         
Query: 646   tttgaaaacaaatcttatgctgaaaaggccattcaagaaatgcaaggtaaggaaattgat 705
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26002 tttgaaaacaaatcttatgctgaaaaggccattcaagaaatgcaaggtaaggaaattgat 25943

                                                                         
Query: 706   ggtagaccaatcaactgtgatatgtccacaagcaagccagctggtaacaacgatcgtgcc 765
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25942 ggtagaccaatcaactgtgatatgtccacaagcaagccagctggtaacaacgatcgtgcc 25883

                                                                         
Query: 766   aagaaattcggtgataccccatctgaaccatctgacactttgttcttgggtaacttatct 825
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25882 aagaaattcggtgataccccatctgaaccatctgacactttgttcttgggtaacttatct 25823

                                                                         
Query: 826   ttcaatgctgacagagacgctattttcgaattattcgctaaacacggtgaagttgtttcc 885
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25822 ttcaatgctgacagagacgctattttcgaattattcgctaaacacggtgaagttgtttcc 25763

                                                                         
Query: 886   gtccgtatcccaacacatccagaaactgaacaaccaaaaggtttcggttatgttcaattc 945
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25762 gtccgtatcccaacacatccagaaactgaacaaccaaaaggtttcggttatgttcaattc 25703

                                                                         
Query: 946   tccaacatggaggacgccaagaaggctctagacgctttacaaggtgaatacattgacaac 1005
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25702 tccaacatggaggacgccaagaaggctctagacgctttacaaggtgaatacattgacaac 25643

                                                                         
Query: 1006  agaccagttagattagacttctcttctccaagaccaaacaacgatggtggtcgtggcggt 1065
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25642 agaccagttagattagacttctcttctccaagaccaaacaacgatggtggtcgtggcggt 25583

                                                                         
Query: 1066  agccgtggttttggtggtcgtggcggtggtcgtggcggtaaccgtggattcggtggtcgt 1125
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25582 agccgtggttttggtggtcgtggcggtggtcgtggcggtaaccgtggattcggtggtcgt 25523

                                                                         
Query: 1126  ggtggcgctcgcggtggccgtggcggtttcagaccatctggttctggtgctaatactgct 1185
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25522 ggtggcgctcgcggtggccgtggcggtttcagaccatctggttctggtgctaatactgct 25463

                                                                         
Query: 1186  ccattgggcagatcaagaaataccgcttctttcgctggttcaaagaaaacatttgattaa 1245
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25462 ccattgggcagatcaagaaataccgcttctttcgctggttcaaagaaaacatttgattaa 25403



 Score =  208 bits (105), Expect = 2e-50
 Identities = 105/105 (100%)
 Strand = Plus / Minus

                                                                         
Query: 189   ttctgaatcctcttcttcatcgtcttctgacagcgaaagtgaagctgaaaccaagaagga 248
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26459 ttctgaatcctcttcttcatcgtcttctgacagcgaaagtgaagctgaaaccaagaagga 26400

                                                          
Query: 249   agaatccaaggattcctcttcctcttcctctgactcttcttccga 293
             |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26399 agaatccaaggattcctcttcctcttcctctgactcttcttccga 26355



 Score =  196 bits (99), Expect = 6e-47
 Identities = 99/99 (100%)
 Strand = Plus / Minus

                                                                         
Query: 1     atggctaagactactaaagtaaaaggtaacaagaaggaagttaaggcttccaaacaagcc 60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26647 atggctaagactactaaagtaaaaggtaacaagaaggaagttaaggcttccaaacaagcc 26588

                                                    
Query: 61    aaagaagaaaaagctaaggccgtctcttcctcttcctcc 99
             |||||||||||||||||||||||||||||||||||||||
Sbjct: 26587 aaagaagaaaaagctaaggccgtctcttcctcttcctcc 26549



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 360   ttcatcctcatcttcatcttc 380
             |||||||||||||||||||||
Sbjct: 26543 ttcatcctcatcttcatcttc 26523



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 235   gaaaccaagaaggaagaatc 254
             ||||||||||||||||||||
Sbjct: 26329 gaaaccaagaaggaagaatc 26310


>gi|4057|emb|X57185.1|SCNSR1 Yeast NSR1 gene for nuclear localization sequence binding protein
          Length = 1707

 Score = 1742 bits (879), Expect = 0.0
 Identities = 893/900 (99%)
 Strand = Plus / Plus

                                                                        
Query: 346  tcttctagctctgattcatcctcatcttcatcttctgatagcgaaagcgaaaaggaagag 405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519  tcttctagctctgattcatcctcatcttcatcttctgatagcgaaagcgaaaaggaagag 578

                                                                        
Query: 406  tctaacgataagaaacgtaaatctgaggacgccgaagaagaagaagacgaagagtcttcc 465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579  tctaacgataagaaacgtaaatctgaggacgccgaagaagaagaagacgaagagtcttcc 638

                                                                        
Query: 466  aacaagaagcnnnnnnntgaagaaaccgaagaaccagctactattttcgttggtagacta 525
            ||||||||||       |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639  aacaagaagcaaaaaaatgaagaaaccgaagaaccagctactattttcgttggtagacta 698

                                                                        
Query: 526  tcgtggtctattgatgacgaatggttgaagaaggaattcgaacacatcggtggtgtcatt 585
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699  tcgtggtctattgatgacgaatggttgaagaaggaattcgaacacatcggtggtgtcatt 758

                                                                        
Query: 586  ggtgccagagttatttatgaaagaggtaccgatagatctcgtggttatggttacgttgat 645
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759  ggtgccagagttatttatgaaagaggtaccgatagatctcgtggttatggttacgttgat 818

                                                                        
Query: 646  tttgaaaacaaatcttatgctgaaaaggccattcaagaaatgcaaggtaaggaaattgat 705
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819  tttgaaaacaaatcttatgctgaaaaggccattcaagaaatgcaaggtaaggaaattgat 878

                                                                        
Query: 706  ggtagaccaatcaactgtgatatgtccacaagcaagccagctggtaacaacgatcgtgcc 765
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879  ggtagaccaatcaactgtgatatgtccacaagcaagccagctggtaacaacgatcgtgcc 938

                                                                        
Query: 766  aagaaattcggtgataccccatctgaaccatctgacactttgttcttgggtaacttatct 825
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939  aagaaattcggtgataccccatctgaaccatctgacactttgttcttgggtaacttatct 998

                                                                        
Query: 826  ttcaatgctgacagagacgctattttcgaattattcgctaaacacggtgaagttgtttcc 885
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999  ttcaatgctgacagagacgctattttcgaattattcgctaaacacggtgaagttgtttcc 1058

                                                                        
Query: 886  gtccgtatcccaacacatccagaaactgaacaaccaaaaggtttcggttatgttcaattc 945
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1059 gtccgtatcccaacacatccagaaactgaacaaccaaaaggtttcggttatgttcaattc 1118

                                                                        
Query: 946  tccaacatggaggacgccaagaaggctctagacgctttacaaggtgaatacattgacaac 1005
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1119 tccaacatggaggacgccaagaaggctctagacgctttacaaggtgaatacattgacaac 1178

                                                                        
Query: 1006 agaccagttagattagacttctcttctccaagaccaaacaacgatggtggtcgtggcggt 1065
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1179 agaccagttagattagacttctcttctccaagaccaaacaacgatggtggtcgtggcggt 1238

                                                                        
Query: 1066 agccgtggttttggtggtcgtggcggtggtcgtggcggtaaccgtggattcggtggtcgt 1125
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1239 agccgtggttttggtggtcgtggcggtggtcgtggcggtaaccgtggattcggtggtcgt 1298

                                                                        
Query: 1126 ggtggcgctcgcggtggccgtggcggtttcagaccatctggttctggtgctaatactgct 1185
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1299 ggtggcgctcgcggtggccgtggcggtttcagaccatctggttctggtgctaatactgct 1358

                                                                        
Query: 1186 ccattgggcagatcaagaaataccgcttctttcgctggttcaaagaaaacatttgattaa 1245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1359 ccattgggcagatcaagaaataccgcttctttcgctggttcaaagaaaacatttgattaa 1418



 Score =  208 bits (105), Expect = 2e-50
 Identities = 105/105 (100%)
 Strand = Plus / Plus

                                                                       
Query: 189 ttctgaatcctcttcttcatcgtcttctgacagcgaaagtgaagctgaaaccaagaagga 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ttctgaatcctcttcttcatcgtcttctgacagcgaaagtgaagctgaaaccaagaagga 421

                                                        
Query: 249 agaatccaaggattcctcttcctcttcctctgactcttcttccga 293
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 agaatccaaggattcctcttcctcttcctctgactcttcttccga 466



 Score =  196 bits (99), Expect = 6e-47
 Identities = 99/99 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggctaagactactaaagtaaaaggtaacaagaaggaagttaaggcttccaaacaagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 atggctaagactactaaagtaaaaggtaacaagaaggaagttaaggcttccaaacaagcc 233

                                                  
Query: 61  aaagaagaaaaagctaaggccgtctcttcctcttcctcc 99
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 234 aaagaagaaaaagctaaggccgtctcttcctcttcctcc 272



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 360 ttcatcctcatcttcatcttc 380
           |||||||||||||||||||||
Sbjct: 278 ttcatcctcatcttcatcttc 298



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 235 gaaaccaagaaggaagaatc 254
           ||||||||||||||||||||
Sbjct: 492 gaaaccaagaaggaagaatc 511


>gi|1323273|emb|Z72946.1|SCYGR161C S.cerevisiae chromosome VII reading frame ORF YGR161c
          Length = 16966

 Score =  393 bits (198), Expect = e-106
 Identities = 212/219 (96%)
 Strand = Plus / Minus

                                                                       
Query: 346 tcttctagctctgattcatcctcatcttcatcttctgatagcgaaagcgaaaaggaagag 405
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 tcttctagctctgattcatcctcatcttcatcttctgatagcgaaagcgaaaaggaagag 160

                                                                       
Query: 406 tctaacgataagaaacgtaaatctgaggacgccgaagaagaagaagacgaagagtcttcc 465
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 tctaacgataagaaacgtaaatctgaggacgccgaagaagaagaagacgaagagtcttcc 100

                                                                       
Query: 466 aacaagaagcnnnnnnntgaagaaaccgaagaaccagctactattttcgttggtagacta 525
           ||||||||||       |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  aacaagaagcaaaaaaatgaagaaaccgaagaaccagctactattttcgttggtagacta 40

                                                  
Query: 526 tcgtggtctattgatgacgaatggttgaagaaggaattc 564
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 39  tcgtggtctattgatgacgaatggttgaagaaggaattc 1



 Score =  208 bits (105), Expect = 2e-50
 Identities = 105/105 (100%)
 Strand = Plus / Minus

                                                                       
Query: 189 ttctgaatcctcttcttcatcgtcttctgacagcgaaagtgaagctgaaaccaagaagga 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ttctgaatcctcttcttcatcgtcttctgacagcgaaagtgaagctgaaaccaagaagga 317

                                                        
Query: 249 agaatccaaggattcctcttcctcttcctctgactcttcttccga 293
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 agaatccaaggattcctcttcctcttcctctgactcttcttccga 272



 Score =  196 bits (99), Expect = 6e-47
 Identities = 99/99 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggctaagactactaaagtaaaaggtaacaagaaggaagttaaggcttccaaacaagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atggctaagactactaaagtaaaaggtaacaagaaggaagttaaggcttccaaacaagcc 505

                                                  
Query: 61  aaagaagaaaaagctaaggccgtctcttcctcttcctcc 99
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaagaagaaaaagctaaggccgtctcttcctcttcctcc 466



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 360 ttcatcctcatcttcatcttc 380
           |||||||||||||||||||||
Sbjct: 460 ttcatcctcatcttcatcttc 440



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 235 gaaaccaagaaggaagaatc 254
           ||||||||||||||||||||
Sbjct: 246 gaaaccaagaaggaagaatc 227


>gi|26185912|emb|AL929071.6| Mouse DNA sequence from clone RP24-450M24 on chromosome 11, complete
             sequence
          Length = 154561

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                        
Query: 261   ttcctcttcctcttcctctgactcttc 287
             |||||||||||||||||||||||||||
Sbjct: 52846 ttcctcttcctcttcctctgactcttc 52872


>gi|23304091|emb|AL671190.10| Mouse DNA sequence from clone RP23-464L12 on chromosome 4, complete
             sequence
          Length = 180239

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 261   ttcctcttcctcttcctctgactcttctt 289
             |||||||||||| ||||||||||||||||
Sbjct: 81302 ttcctcttcctcctcctctgactcttctt 81330


>gi|28867175|gb|AC124366.4| Mus musculus chromosome 1 clone RP24-541E9, complete sequence
          Length = 166555

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 261   ttcctcttcctcttcctctgactcttcttcc 291
             |||||||||||||||||||  ||||||||||
Sbjct: 24493 ttcctcttcctcttcctcttcctcttcttcc 24463


>gi|28850220|gb|AC122280.4| Mus musculus chromosome 17 clone RP23-239I12, complete sequence
          Length = 238767

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                             
Query: 261    ttcctcttcctcttcctctgactcttcttcc 291
              |||||||||||||||||||  ||||||||||
Sbjct: 195385 ttcctcttcctcttcctcttcctcttcttcc 195415



 Score = 44.1 bits (22), Expect = 0.51
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 261    ttcctcttcctcttcctctgactcttcttc 290
              |||||||||||||||||||  |||||||||
Sbjct: 195740 ttcctcttcctcttcctcttcctcttcttc 195769


>gi|28416941|ref|NM_006938.2| Homo sapiens small nuclear ribonucleoprotein D1 polypeptide 16kDa
           (SNRPD1), mRNA
          Length = 1614

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 261 ttcctcttcctcttcctctgactcttc 287
           |||||||||||||||||||| ||||||
Sbjct: 447 ttcctcttcctcttcctctgcctcttc 421


>gi|705364|gb|L36188.1|HUMSNRP04 Homo sapiens small nuclear ribonucleoprotein (SNRPD1) gene, exon 4
           and complete cds
          Length = 1345

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 261 ttcctcttcctcttcctctgactcttc 287
           |||||||||||||||||||| ||||||
Sbjct: 53  ttcctcttcctcttcctctgcctcttc 27


>gi|27707205|ref|XM_231251.1| Rattus norvegicus similar to rab6 GTPase activating protein (GAP and
            centrosome-associated) [Homo sapiens] (LOC311911), mRNA
          Length = 3096

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 195  atcctcttcttcatcgtcttctg 217
            |||||||||||||||||||||||
Sbjct: 1632 atcctcttcttcatcgtcttctg 1610


>gi|27683254|ref|XM_219867.1| Rattus norvegicus similar to nucleolar phosphoprotein B23.2 - rat
           (LOC293945), mRNA
          Length = 399

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 361 tcatcctcatcttcatcttctga 383
           |||||||||||||||||||||||
Sbjct: 296 tcatcctcatcttcatcttctga 274


>gi|15021955|gb|AC078819.24| Homo sapiens 12q BAC RP11-490H24 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 172319

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 261   ttcctcttcctcttcctctgactcttcttcc 291
             |||||||||||||||||||  ||||||||||
Sbjct: 98558 ttcctcttcctcttcctcttcctcttcttcc 98528


>gi|27368251|gb|AY196903.1| Homo sapiens interleukin 1 receptor antagonist (IL1RN) gene, complete
            cds
          Length = 19677

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 261  ttcctcttcctcttcctctgactcttcttcc 291
            |||||||||||||||||||  ||||||||||
Sbjct: 5221 ttcctcttcctcttcctcttcctcttcttcc 5251


>gi|24022447|gb|AC122022.4| Mus musculus chromosome 5 clone RP24-372J5, complete sequence
          Length = 174861

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                             
Query: 261    ttcctcttcctcttcctctgactcttcttcc 291
              |||||||||||||||||||  ||||||||||
Sbjct: 169168 ttcctcttcctcttcctcttcctcttcttcc 169138


>gi|22597615|gb|AC091038.9| Homo sapiens chromosome 18, clone RP11-1015N5, complete sequence
          Length = 202421

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 261    ttcctcttcctcttcctctgactcttc 287
              |||||||||||||||||||| ||||||
Sbjct: 188123 ttcctcttcctcttcctctgcctcttc 188149


>gi|21844711|gb|AC098889.3| Mus musculus clone RP23-122O10, complete sequence
          Length = 204770

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 261   ttcctcttcctcttcctctgactcttcttcc 291
             |||||||||||||||||||  ||||||||||
Sbjct: 51995 ttcctcttcctcttcctcttcctcttcttcc 52025


>gi|21717100|gb|AC103579.10| Mus Musculus Strain C57BL6/J Chromosome 14 BAC Clone RP23-145J23,
             Complete Sequence, complete sequence
          Length = 227361

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 261   ttcctcttcctcttcctctgactcttcttcc 291
             |||||||||||||||||||  ||||||||||
Sbjct: 24223 ttcctcttcctcttcctcttcctcttcttcc 24193


>gi|15778814|gb|AC084382.1| Mus musculus clone RP23-5K17, complete sequence
          Length = 165077

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                             
Query: 261    ttcctcttcctcttcctctgactcttcttcc 291
              |||||||||||||||||||  ||||||||||
Sbjct: 155885 ttcctcttcctcttcctcttcctcttcttcc 155915



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                             
Query: 261    ttcctcttcctcttcctctgactcttcttcc 291
              |||||||||||||||||||  ||||||||||
Sbjct: 155768 ttcctcttcctcttcctcttcctcttcttcc 155798



 Score = 44.1 bits (22), Expect = 0.51
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 262    tcctcttcctcttcctctgactcttcttcc 291
              ||||||||||||||||||  ||||||||||
Sbjct: 155661 tcctcttcctcttcctcttcctcttcttcc 155690


>gi|21431403|gb|AC106037.9| Homo sapiens chromosome 18, clone RP11-13N13, complete sequence
          Length = 178029

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 261   ttcctcttcctcttcctctgactcttc 287
             |||||||||||||||||||| ||||||
Sbjct: 86450 ttcctcttcctcttcctctgcctcttc 86476


>gi|21322222|gb|AC002410.2| Homo sapiens BAC clone CTA-264L19 from 7p15-p21, complete sequence
          Length = 96217

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 261   ttcctcttcctcttcctctgactcttcttcc 291
             |||||||||||||||||||  ||||||||||
Sbjct: 50065 ttcctcttcctcttcctcttcctcttcttcc 50095


>gi|17998570|gb|AC093022.4| Mus Musculus Chromosome 14 Strain C57Bl6/J Clone RP23-297E8, complete
              sequence
          Length = 158591

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                             
Query: 261    ttcctcttcctcttcctctgactcttcttcc 291
              |||||||||||||||||||  ||||||||||
Sbjct: 150540 ttcctcttcctcttcctcttcctcttcttcc 150510


>gi|13027370|gb|AC068627.16| Mus Musculus Chromosome 5 RP23-389F6, complete sequence
          Length = 180673

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 261   ttcctcttcctcttcctctgactcttcttcc 291
             |||||||||||||||||||  ||||||||||
Sbjct: 94663 ttcctcttcctcttcctcttcctcttcttcc 94633


>gi|17223153|gb|AC020632.16| Homo sapiens 3 BAC RP11-333H9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 162029

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 261   ttcctcttcctcttcctctgactcttcttcc 291
             |||||||||||||||||||  ||||||||||
Sbjct: 37564 ttcctcttcctcttcctcttcctcttcttcc 37594


>gi|29125156|emb|AL590069.5| Human DNA sequence from clone RP11-353J17 on chromosome X, complete
             sequence
          Length = 158828

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 261   ttcctcttcctcttcctctgactcttcttcc 291
             |||||||||||||||||||  ||||||||||
Sbjct: 79968 ttcctcttcctcttcctcttcctcttcttcc 79938


>gi|14718389|gb|AC016724.11| Homo sapiens BAC clone RP11-339F22 from 2, complete sequence
          Length = 197308

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                             
Query: 261    ttcctcttcctcttcctctgactcttcttcc 291
              |||||||||||||||||||  ||||||||||
Sbjct: 169843 ttcctcttcctcttcctcttcctcttcttcc 169873


>gi|28881786|emb|AL772171.7| Mouse DNA sequence from clone RP23-36B3 on chromosome 4, complete
             sequence
          Length = 209864

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 261   ttcctcttcctcttcctctgactcttcttcc 291
             |||||||||||||||||||  ||||||||||
Sbjct: 37589 ttcctcttcctcttcctcttcctcttcttcc 37619


>gi|28317370|tpe|BN000002.1|HSA000002 TPA: Homo sapiens complete interleukin-1 gene cluster (Draft Contig)
              including IL1A (IL1F1), IL1B (IL1F2), IL1RN (IL1F3), IL1F5,
              IL1F6, IL1F7, IL1F8, IL1F9, IL1F10
          Length = 495475

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                             
Query: 261    ttcctcttcctcttcctctgactcttcttcc 291
              |||||||||||||||||||  ||||||||||
Sbjct: 412370 ttcctcttcctcttcctcttcctcttcttcc 412400


>gi|27801673|emb|AL929011.9| Mouse DNA sequence from clone RP23-55O12 on chromosome 2, complete
             sequence
          Length = 181105

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 261   ttcctcttcctcttcctctgactcttcttcc 291
             |||||||||||||||||||  ||||||||||
Sbjct: 25271 ttcctcttcctcttcctcttcctcttcttcc 25301



 Score = 44.1 bits (22), Expect = 0.51
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 261   ttcctcttcctcttcctctgactcttcttc 290
             |||||||||||||||||||  |||||||||
Sbjct: 25172 ttcctcttcctcttcctcttcctcttcttc 25201


>gi|12804598|gb|BC001721.1|BC001721 Homo sapiens, small nuclear ribonucleoprotein D1 polypeptide
           (16kD), clone MGC:2222 IMAGE:3355716, mRNA, complete cds
          Length = 598

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 261 ttcctcttcctcttcctctgactcttc 287
           |||||||||||||||||||| ||||||
Sbjct: 438 ttcctcttcctcttcctctgcctcttc 412


>gi|23589193|dbj|AK116605.1| Ciona intestinalis cDNA, clone:cits038m03, full insert sequence
          Length = 1498

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 363  atcctcatcttcatcttctgata 385
            |||||||||||||||||||||||
Sbjct: 1011 atcctcatcttcatcttctgata 1033


>gi|6651043|gb|AF131866.1|AF131866 Mus musculus BAC 271B7 chromosome X Gabre gene, complete sequence
          Length = 110312

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 261   ttcctcttcctcttcctctgactcttcttcc 291
             |||||||||||||||||||  ||||||||||
Sbjct: 40224 ttcctcttcctcttcctcttcctcttcttcc 40194



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   attcctcttcctcttcctct 279
             ||||||||||||||||||||
Sbjct: 40120 attcctcttcctcttcctct 40101


>gi|23380943|emb|AL807744.6| Mouse DNA sequence from clone RP23-174C4 on chromosome X, complete
              sequence
          Length = 163576

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                             
Query: 261    ttcctcttcctcttcctctgactcttcttcc 291
              |||||||||||||||||||  ||||||||||
Sbjct: 147855 ttcctcttcctcttcctcttcctcttcttcc 147885


>gi|22204660|emb|AL805933.7| Mouse DNA sequence from clone RP23-31P9 on chromosome X, complete
             sequence
          Length = 209410

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 261   ttcctcttcctcttcctctgactcttcttcc 291
             |||||||||||||||||||  ||||||||||
Sbjct: 86697 ttcctcttcctcttcctcttcctcttcttcc 86727


>gi|22798379|emb|AL807816.7| Mouse DNA sequence from clone RP23-13H12 on chromosome X, complete
             sequence
          Length = 193219

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 261   ttcctcttcctcttcctctgactcttcttcc 291
             |||||||||||||||||||  ||||||||||
Sbjct: 59470 ttcctcttcctcttcctcttcctcttcttcc 59440



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   attcctcttcctcttcctct 279
             ||||||||||||||||||||
Sbjct: 59366 attcctcttcctcttcctct 59347


>gi|21211803|emb|AL591967.11| Mouse DNA sequence from clone RP23-143E11 on chromosome 2, complete
             sequence
          Length = 124280

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 261   ttcctcttcctcttcctctgactcttcttcc 291
             |||||||||||||||||||  ||||||||||
Sbjct: 17512 ttcctcttcctcttcctcttcctcttcttcc 17542


>gi|338264|gb|J03798.1|HUMSNRNPD Human autoantigen small nuclear ribonucleoprotein Sm-D mRNA,
           complete cds
          Length = 1633

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 261 ttcctcttcctcttcctctgactcttc 287
           |||||||||||||||||||| ||||||
Sbjct: 466 ttcctcttcctcttcctctgcctcttc 440


>gi|18152564|emb|AL592215.12| Mouse DNA sequence from clone RP23-172P19 on chromosome 11, complete
              sequence
          Length = 219468

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                             
Query: 261    ttcctcttcctcttcctctgactcttcttcc 291
              |||||||||||||||||||  ||||||||||
Sbjct: 142374 ttcctcttcctcttcctcttcctcttcttcc 142404


>gi|29124192|gb|AC104329.22| Mus musculus chromosome 3 clone rp23-418c12 strain C57BL/6J, complete
             sequence
          Length = 197096

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 261   ttcctcttcctcttcctctgactcttcttc 290
             |||||||||||||||||||  |||||||||
Sbjct: 96915 ttcctcttcctcttcctcttcctcttcttc 96944


>gi|29029236|gb|AC093524.4| Homo sapiens chromosome 16 clone RP11-185O21, complete sequence
          Length = 135170

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 261  ttcctcttcctcttcctctgactcttcttc 290
            |||||||||||||||||||  |||||||||
Sbjct: 8192 ttcctcttcctcttcctctccctcttcttc 8163


>gi|28973807|gb|AC092141.4| Homo sapiens chromosome 16 clone RP11-478K1, complete sequence
          Length = 98984

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 261   ttcctcttcctcttcctctgactcttcttc 290
             |||||||||||||||||||  |||||||||
Sbjct: 95671 ttcctcttcctcttcctctccctcttcttc 95642


>gi|28933546|gb|AC024590.8| Homo sapiens chromosome 16 clone RP11-487C14, complete sequence
          Length = 180701

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 261    ttcctcttcctcttcctctgactcttcttc 290
              ||||||||||||||| ||| ||||||||||
Sbjct: 128339 ttcctcttcctcttcttcttactcttcttc 128310


>gi|28829751|gb|AC116305.2| Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4,
              complete sequence
          Length = 413138

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 261    ttcctcttcctcttcctctgactcttcttc 290
              |||||||||||||||||||  |||||||||
Sbjct: 164179 ttcctcttcctcttcctcttcctcttcttc 164150


>gi|22296697|gb|AC091043.12| Homo sapiens chromosome 18, clone RP11-595B24, complete sequence
          Length = 208310

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 261   ttcctcttcctcttcctctgactcttcttc 290
             |||||||||||||||||||  |||||||||
Sbjct: 74694 ttcctcttcctcttcctcttcctcttcttc 74723


>gi|28913006|gb|AC093200.3| Homo sapiens chromosome 8 clone CTD-2336o2 map p23, complete sequence
          Length = 114456

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 261   ttcctcttcctcttcctctgactcttcttc 290
             |||||||||||||||||||  |||||||||
Sbjct: 97099 ttcctcttcctcttcctcttcctcttcttc 97128


>gi|28882131|gb|AC130184.4| Macaca mulatta clone CH250-513J21, complete sequence
          Length = 160850

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 261    ttcctcttcctcttcctctgactcttcttc 290
              |||||||||||||||||||  |||||||||
Sbjct: 104803 ttcctcttcctcttcctcttcctcttcttc 104774


>gi|28850231|gb|AC131748.3| Mus musculus chromosome 12 clone RP23-42A17, complete sequence
          Length = 215972

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 261   ttcctcttcctcttcctctgactcttcttc 290
             |||||||||||||||||||  |||||||||
Sbjct: 58813 ttcctcttcctcttcctcttcctcttcttc 58842


>gi|28626894|gb|AC124439.4| Mus musculus chromosome 9 clone RP24-261N14, complete sequence
          Length = 162530

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 261   ttcctcttcctcttcctctgactcttcttc 290
             |||||||||||||||||||  |||||||||
Sbjct: 25514 ttcctcttcctcttcctcttcctcttcttc 25543


>gi|28604204|gb|AC122246.5| Mus musculus chromosome 1 clone RP23-152K13, complete sequence
          Length = 203739

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 261   ttcctcttcctcttcctctgactcttcttc 290
             |||||||||||||||||||  |||||||||
Sbjct: 48181 ttcctcttcctcttcctcttcctcttcttc 48152


>gi|28604190|gb|AC126674.3| Mus musculus chromosome 19 clone RP23-364B6, complete sequence
          Length = 203282

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 261   ttcctcttcctcttcctctgactcttcttc 290
             |||||||||||||||||||  |||||||||
Sbjct: 42704 ttcctcttcctcttcctcttcctcttcttc 42733


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
  or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Mar 20, 2003 10:39 PM
  Number of letters in database: -658,021,059
  Number of sequences in database:  1,707,549
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,674,446
Number of Sequences: 1707549
Number of extensions: 5674446
Number of successful extensions: 197737
Number of sequences better than 10.0: 751
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 180364
Number of HSP's gapped (non-prelim): 16764
length of query: 1245
length of database: 7,931,913,529
effective HSP length: 22
effective length of query: 1223
effective length of database: 7,894,347,451
effective search space: 9654786932573
effective search space used: 9654786932573
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)






 
BLASTX 2.2.5 [Nov-16-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
RID: 1048255570-015122-10876
Query= ORFN:YGR159C NSR1 SGDID:S0003391, Chr VII from 806414-807658,
reverse complement
         (1245 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           1,376,251 sequences; 442,128,549 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|6321599|ref|NP_011675.1| nuclear localization sequence bindin...   411   e-113
gi|253181|gb|AAB22809.1| NSR1=nucleolin homolog [Saccharomyces c...   411   e-113
gi|1438951|gb|AAB04133.1| cutinase negative acting protein            189   8e-47
gi|19114443|ref|NP_593531.1| gar2 protein [Schizosaccharomyces p...   189   1e-46
gi|2130461|pir||S55785 nucleolar protein gar2 - fission yeast (S...   187   4e-46
gi|28925605|gb|EAA34626.1| hypothetical protein [Neurospora crassa]   164   2e-39
gi|21309|emb|CAA41023.1| 28kD RNA binding protein [Spinacia oler...   127   4e-28
gi|99565|pir||S15348 RNA-binding protein, 28K - spinach               127   4e-28
gi|133247|sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chlorop...   127   4e-28
gi|100903|pir||S23780 nucleic acid-binding protein - maize >gi|1...   113   7e-24
gi|12230584|sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chl...   112   9e-24
gi|1076305|pir||S53492 RNA-binding protein cp31 precursor - Arab...   112   2e-23
gi|15233980|ref|NP_194208.1| 31 kDa ribonucleoprotein, chloropla...   112   2e-23
gi|15294254|gb|AAK95304.1|AF410318_1 AT4g24770/F22K18_30 [Arabid...   112   2e-23
gi|681908|dbj|BAA06521.1| cp31 [Arabidopsis thaliana]                 112   2e-23
gi|629557|pir||S49030 RNA-binding protein RNP-D precursor - Arab...   112   2e-23
gi|475719|gb|AAA18379.1| RNA-binding protein 2                        112   2e-23
gi|99684|pir||S20940 DNA-binding protein - Arabidopsis thaliana       112   2e-23
gi|1076251|pir||S50765 RNA-binding protein - common ice plant >g...   110   3e-23
gi|19032260|emb|CAD18921.1| RNA-binding protein precursor [Perse...   110   5e-23
gi|7446355|pir||S71556 DNA-binding protein CEBP-1 - clove pink >...   110   5e-23
gi|7446357|pir||T06817 RNA-binding protein - garden pea >gi|2330...   110   6e-23
gi|17432522|gb|AAL39067.1|AF389431_1 single-stranded DNA binding...   109   8e-23
gi|15240641|ref|NP_199836.1| chloroplast RNA-binding protein cp3...   109   1e-22
gi|7446359|pir||T05727 nucleic acid-binding protein - barley >gi...   108   1e-22
gi|1350820|sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloro...   108   2e-22
gi|12230585|sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chl...   107   4e-22
gi|133246|sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chlorop...   107   4e-22
gi|7446358|pir||T05725 cp31AHv protein - barley >gi|3550467|emb|...   106   7e-22
gi|133248|sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chlorop...   106   9e-22
gi|21617920|gb|AAM66970.1| putative RNA-binding protein [Arabido...   105   1e-21
gi|15228102|ref|NP_181259.1| chloroplast RNA-binding protein cp2...   105   1e-21
gi|7446356|pir||T06232 Ps16 protein - wheat >gi|2443390|dbj|BAA2...   105   1e-21
gi|1350821|sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloro...   105   2e-21
gi|22296371|dbj|BAC10140.1| putative ribonucleoprotein [Oryza sa...   104   3e-21
gi|18921322|gb|AAL82527.1|AC084766_13 putative ribonucleoprotein...   102   1e-20
gi|475720|gb|AAA18380.1| RNA-binding protein 3                        100   5e-20
gi|128840|sp|P15771|NUCL_CHICK Nucleolin (Protein C23) >gi|70845...    99   1e-19
gi|422617|pir||S32644 nucleolin - African clawed frog >gi|295899...    98   2e-19
gi|92559|pir||JH0148 nucleolin - rat                                   97   5e-19
gi|19032262|emb|CAD18922.1| RNA-binding protein precursor [Perse...    97   5e-19
gi|6981248|ref|NP_036881.1| nucleolin [Rattus norvegicus] >gi|12...    97   5e-19
gi|464252|sp|P20397|NUCL_XENLA Nucleolin (Protein C23) >gi|10414...    96   1e-18
gi|14488165|emb|CAC42098.1| RBD protein [Chironomus tentans]           96   1e-18
gi|21740377|emb|CAD40856.1| OSJNBa0064H22.1 [Oryza sativa (japon...    95   2e-18
gi|27804344|gb|AAO22235.1| nucleolin [Cyprinus carpio]                 94   3e-18
gi|18423684|ref|NP_568815.1| RNA binding protein 45 (RBP45), put...    94   6e-18
gi|9758270|dbj|BAB08769.1| contains similarity to polyadenylate-...    94   6e-18
gi|7106377|ref|NP_035010.1| nucleolin [Mus musculus] >gi|128843|...    94   6e-18
gi|26325114|dbj|BAC26311.1| unnamed protein product [Mus musculus]     94   6e-18
gi|13529464|gb|AAH05460.1| nucleolin [Mus musculus]                    94   6e-18
gi|26327461|dbj|BAC27474.1| unnamed protein product [Mus musculus]     94   6e-18
gi|26341628|dbj|BAC34476.1| unnamed protein product [Mus musculus]     94   6e-18
gi|90209|pir||A27441 nucleolin - Chinese hamster                       93   8e-18
gi|128842|sp|P08199|NUCL_MESAU Nucleolin (Protein C23)                 93   8e-18
gi|387050|gb|AAA36966.1| nucleolin, C23                                93   8e-18
gi|7446339|pir||T05730 probable RNA-binding protein cp33 precurs...    93   1e-17
gi|12018306|ref|NP_072143.1| nucleolin-related protein NRP [Ratt...    93   1e-17
gi|4885511|ref|NP_005372.1| nucleolin [Homo sapiens] >gi|128841|...    93   1e-17
gi|17537143|ref|NP_496718.1| RNA recognition motif containing pr...    92   2e-17
gi|21750187|dbj|BAC03738.1| unnamed protein product [Homo sapiens]     92   2e-17
gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Ara...    91   3e-17
gi|15235241|ref|NP_195137.1| polyadenylate-binding protein 2 (PA...    91   3e-17
gi|4507499|ref|NP_003243.1| TIA1 cytotoxic granule-associated RN...    91   4e-17
gi|13435394|ref|NP_071728.1| TIA1 cytotoxic granule-associated R...    91   4e-17
gi|7446360|pir||T09108 RNA binding protein, 24K, chloroplast - s...    91   4e-17
gi|28883275|gb|AAO49721.1| TIAR [Gallus gallus]                        91   4e-17
gi|12583812|gb|AAG59664.1|AC084319_22 putative RNA binding prote...    91   5e-17
gi|15231200|ref|NP_190806.1| chloroplast RNA-binding protein cp3...    90   6e-17
gi|212412|gb|AAA48983.1| nucleolin/C23                                 90   6e-17
gi|681912|dbj|BAA06523.1| cp33 [Arabidopsis thaliana]                  90   6e-17
gi|27924240|gb|AAH45086.1| Similar to Tial1 cytotoxic granule-as...    90   8e-17
gi|13540314|gb|AAK29408.1|AF338225_1 embryonic poly(A) binding p...    89   1e-16
gi|14714709|gb|AAH10496.1| Tial1 cytotoxic granule-associated RN...    89   2e-16
gi|6678349|ref|NP_033409.1| Tial1 cytotoxic granule-associated R...    89   2e-16
gi|28883273|gb|AAO49720.1| TIA-1 [Gallus gallus]                       89   2e-16
gi|18416906|ref|NP_567764.1| RNA binding protein 45 (RBP45), put...    88   2e-16
gi|16215602|emb|CAC95017.1| TIAR protein [Xenopus laevis]              88   2e-16
gi|7485342|pir||T04823 hypothetical protein F10M23.340 - Arabido...    88   2e-16
gi|28386187|gb|AAH46812.1| Similar to cytotoxic granule-associat...    88   3e-16
gi|6755783|ref|NP_035715.1| cytotoxic granule-associated RNA bin...    88   3e-16
gi|26390405|dbj|BAC25892.1| unnamed protein product [Mus musculus]     88   3e-16
gi|28529050|ref|XP_141989.2| similar to poly(A) binding protein ...    88   3e-16
gi|27712316|ref|XP_232139.1| similar to cytotoxic granule-associ...    87   4e-16
gi|17979394|gb|AAL49922.1| unknown protein [Arabidopsis thaliana...    87   4e-16
gi|12803083|gb|AAH02343.1|AAH02343 Similar to nucleolin [Homo sa...    87   4e-16
gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Da...    87   4e-16
gi|12835985|dbj|BAB23448.1| unnamed protein product [Mus musculus]     87   4e-16
gi|20841566|ref|XP_132316.1| RIKEN cDNA 1200009A02 [Mus musculus]      87   4e-16
gi|15530220|gb|AAH13889.1|AAH13889 Unknown (protein for MGC:1119...    87   4e-16
gi|8922388|ref|NP_060547.1| hypothetical protein FLJ10377 [Homo ...    87   4e-16
gi|17435151|ref|XP_067844.1| similar to polyA-binding protein [T...    87   4e-16
gi|19343654|gb|AAH25619.1| Similar to KIAA0682 gene product [Mus...    87   4e-16
gi|17064758|gb|AAL32533.1| ubiquitin / ribosomal protein CEP52 [...    87   5e-16
gi|28071331|dbj|BAC56019.1| putative RNA Binding Protein 45 [Ory...    87   5e-16
gi|21288546|gb|EAA00839.1| agCP12336 [Anopheles gambiae str. PEST]     87   5e-16
gi|27706752|ref|XP_228576.1| similar to poly(A) binding protein ...    87   5e-16
gi|27704650|ref|XP_230831.1| similar to embryonic poly(A) bindin...    87   5e-16
gi|12229876|sp|Q15097|PAB2_HUMAN Polyadenylate-binding protein 2...    87   5e-16
gi|21295360|gb|EAA07505.1| agCP1243 [Anopheles gambiae str. PEST]      87   7e-16

ALIGNMENTS
>gi|6321599|ref|NP_011675.1| nuclear localization sequence binding protein; Nsr1p [Saccharomyces
            cerevisiae]
 gi|128576|sp|P27476|NSR1_YEAST Nuclear localization sequence binding protein (P67)
 gi|101457|pir||A39205 nuclear localization sequence-binding protein NSR1 - yeast
            (Saccharomyces cerevisiae)
 gi|4058|emb|CAA40472.1| nuclear localization sequence binding protein [Saccharomyces
            cerevisiae]
 gi|1045265|emb|CAA59817.1| ORF G7001 [Saccharomyces cerevisiae]
 gi|1323271|emb|CAA97173.1| ORF YGR159c [Saccharomyces cerevisiae]
          Length = 414

 Score =  411 bits (1056), Expect = e-113
 Identities = 207/248 (83%), Positives = 207/248 (83%)
 Frame = +1

Query: 499  PATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAI 678
            PATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAI
Sbjct: 167  PATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAI 226

Query: 679  QEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFEL 858
            QEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFEL
Sbjct: 227  QEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFEL 286

Query: 859  FAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPR 1038
            FAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPR
Sbjct: 287  FAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPR 346

Query: 1039 PNNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANTAPLGRSRNTASF 1218
            PNND                                         ANTAPLGRSRNTASF
Sbjct: 347  PNNDGGRGGSRGFGGRGGGRGGNRGFGGRGGARGGRGGFRPSGSGANTAPLGRSRNTASF 406

Query: 1219 AGSKKTFD 1242
            AGSKKTFD
Sbjct: 407  AGSKKTFD 414



 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 18/152 (11%)
 Frame = +1

Query: 649  ENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSD--------- 801
            E +    K  +  +    D    +   S S+   +ND+ +K  D   E  +         
Sbjct: 102  EEEKEETKKEESKESSSSDSSSSSSSDSESEKEESNDKKRKSEDAEEEEDEESSNKKQKN 161

Query: 802  -------TLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMED 960
                   T+F+G LS++ D + + + F   G V+  R+     T++ +G+GYV F N   
Sbjct: 162  EETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSY 221

Query: 961  AKKALDALQGEYIDNRPVRLDFSSPRP--NND 1050
            A+KA+  +QG+ ID RP+  D S+ +P  NND
Sbjct: 222  AEKAIQEMQGKEIDGRPINCDMSTSKPAGNND 253


>gi|253181|gb|AAB22809.1| NSR1=nucleolin homolog [Saccharomyces cerevisiae, Peptide, 249 aa]
          Length = 249

 Score =  411 bits (1056), Expect = e-113
 Identities = 207/248 (83%), Positives = 207/248 (83%)
 Frame = +1

Query: 499  PATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAI 678
            PATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAI
Sbjct: 2    PATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAI 61

Query: 679  QEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFEL 858
            QEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFEL
Sbjct: 62   QEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFEL 121

Query: 859  FAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPR 1038
            FAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPR
Sbjct: 122  FAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPR 181

Query: 1039 PNNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANTAPLGRSRNTASF 1218
            PNND                                         ANTAPLGRSRNTASF
Sbjct: 182  PNNDGGRGGSRGFGGRGGGRGGNRGFGGRGGARGGRGGFRPSGSGANTAPLGRSRNTASF 241

Query: 1219 AGSKKTFD 1242
            AGSKKTFD
Sbjct: 242  AGSKKTFD 249


>gi|1438951|gb|AAB04133.1| cutinase negative acting protein
          Length = 507

 Score =  189 bits (480), Expect = 8e-47
 Identities = 97/191 (50%), Positives = 128/191 (67%), Gaps = 10/191 (5%)
 Frame = +1

Query: 499  PATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAI 678
            P T+F G LSW+IDD+ L + F+   G++GARV+ E+GT RSRG+GYVDF +     KA 
Sbjct: 250  PTTLFAGSLSWNIDDDALYEAFKEFNGLVGARVVTEKGTGRSRGFGYVDFNDPEGCTKAY 309

Query: 679  QEMQGKEIDGRPINCDMSTSKPAGNN------DRAKKFGDTPSEPSDTLFLGNLSFNADR 840
            + MQG E+DGR +N D + ++PA  N      DRAK+ GDT S  SDTLF+GNL  + D+
Sbjct: 310  EAMQGFELDGRALNLDYANARPADANPAGRAADRAKRHGDTLSPESDTLFVGNLPIDVDQ 369

Query: 841  DAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDN----R 1008
            DA+ E F +  EV SVR+PT P++   KGFGYV F+++EDAK  +DA  G  I N    R
Sbjct: 370  DAVREFFGEVAEVASVRLPTDPDSGNLKGFGYVSFNSVEDAKAVIDAKNGAPIGNGRMSR 429

Query: 1009 PVRLDFSSPRP 1041
             VRLDF+S RP
Sbjct: 430  SVRLDFASSRP 440



 Score = 77.8 bits (190), Expect = 3e-13
 Identities = 39/97 (40%), Positives = 61/97 (62%)
 Frame = +1

Query: 751  NNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGF 930
            ++D AKK   T ++   TLF G+LS+N D DA++E F +   +V  R+ T   T + +GF
Sbjct: 238  DSDEAKK---TKTDAPTTLFAGSLSWNIDDDALYEAFKEFNGLVGARVVTEKGTGRSRGF 294

Query: 931  GYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRP 1041
            GYV F++ E   KA +A+QG  +D R + LD+++ RP
Sbjct: 295  GYVDFNDPEGCTKAYEAMQGFELDGRALNLDYANARP 331


>gi|19114443|ref|NP_593531.1| gar2 protein [Schizosaccharomyces pombe]
 gi|6226864|sp|P41891|GAR2_SCHPO Protein gar2
 gi|7523472|emb|CAB86413.1| gar2 protein [Schizosaccharomyces pombe]
          Length = 500

 Score =  189 bits (479), Expect = 1e-46
 Identities = 93/182 (51%), Positives = 126/182 (69%), Gaps = 4/182 (2%)
 Frame = +1

Query: 505  TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQE 684
            T+FVGRLSW++DD+WL +EFE  G ++GARVI +  + RS+GYGYVDFE    A+ A+  
Sbjct: 264  TVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAA 323

Query: 685  MQGKEIDGRPINCDMSTSKPAG----NNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIF 852
               KEIDGR +N D+S  +PA        RA  FGD  SEPSDT+F+GNLSFNA  D + 
Sbjct: 324  NGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLS 383

Query: 853  ELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSS 1032
              F   G++ S+R+PT P++ + KGFGYV FS+++ AKK ++ + G +I  RP RLDFS+
Sbjct: 384  TAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-MNGHFIAGRPCRLDFST 442

Query: 1033 PR 1038
            PR
Sbjct: 443  PR 444



 Score = 66.6 bits (161), Expect = 8e-10
 Identities = 47/170 (27%), Positives = 82/170 (48%)
 Frame = +1

Query: 538  DDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPI 717
            ++E ++K  E   G   +    E  +D S   G  D  + S +E + ++ + ++ +    
Sbjct: 187  EEEVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSESESSSEDEKKRKAEPASE 246

Query: 718  NCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIP 897
                  +KP+ +           S  + T+F+G LS+N D   + + F ++G +V  R+ 
Sbjct: 247  ERPAKITKPSQD-----------SNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVI 295

Query: 898  THPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRPNN 1047
               ++ + KG+GYV F   E AK A+ A   + ID R V LD S+PRP N
Sbjct: 296  MDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPAN 345


>gi|2130461|pir||S55785 nucleolar protein gar2 - fission yeast (Schizosaccharomyces pombe)
 gi|663262|emb|CAA88179.1| gar2 [Schizosaccharomyces pombe]
          Length = 500

 Score =  187 bits (474), Expect = 4e-46
 Identities = 92/182 (50%), Positives = 125/182 (68%), Gaps = 4/182 (2%)
 Frame = +1

Query: 505  TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQE 684
            T+FVGRLSW++DD+WL +EFE  G ++GARVI +  + RS+GYGYVDFE    A+ A+  
Sbjct: 264  TVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAA 323

Query: 685  MQGKEIDGRPINCDMSTSKPAG----NNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIF 852
               KEIDGR +N D+   +PA        RA  FGD  SEPSDT+F+GNLSFNA  D + 
Sbjct: 324  NGTKEIDGRMVNLDLPNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLS 383

Query: 853  ELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSS 1032
              F   G++ S+R+PT P++ + KGFGYV FS+++ AKK ++ + G +I  RP RLDFS+
Sbjct: 384  TAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-MNGHFIAGRPCRLDFST 442

Query: 1033 PR 1038
            PR
Sbjct: 443  PR 444



 Score = 64.7 bits (156), Expect = 3e-09
 Identities = 46/170 (27%), Positives = 81/170 (47%)
 Frame = +1

Query: 538  DDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPI 717
            ++E ++K  E   G   +    E  +D S   G  D  + S +E + ++ + ++ +    
Sbjct: 187  EEEVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSESESSSEDEKKRKAEPASE 246

Query: 718  NCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIP 897
                  +KP+ +           S  + T+F+G LS+N D   + + F ++G +V  R+ 
Sbjct: 247  ERPAKITKPSQD-----------SNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVI 295

Query: 898  THPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRPNN 1047
               ++ + KG+GYV F   E AK A+ A   + ID R V LD  +PRP N
Sbjct: 296  MDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLPNPRPAN 345


>gi|28925605|gb|EAA34626.1| hypothetical protein [Neurospora crassa]
          Length = 428

 Score =  164 bits (416), Expect = 2e-39
 Identities = 86/188 (45%), Positives = 116/188 (61%), Gaps = 6/188 (3%)
 Frame = +1

Query: 502  ATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQ 681
            +T++VG L W IDD  L  EFE   G   ARV+ +R + RSRG+GYVDF     A+KA  
Sbjct: 180  STLWVGNLGWGIDDAILLAEFEDCEGAKSARVVTDRESGRSRGFGYVDFATNEQAQKAYD 239

Query: 682  EMQGKEIDGRPINCDMSTSKPAGNN------DRAKKFGDTPSEPSDTLFLGNLSFNADRD 843
               G  ++GR +  D + +K AGN       +RA K GDT S  SDTLF+GN+ F+AD  
Sbjct: 240  AKSGALLEGREMRLDFA-AKDAGNKPQDKAANRAAKHGDTISPESDTLFVGNMPFSADES 298

Query: 844  AIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLD 1023
             + + F     V S+RIPT  E+ +PKGF YV F+++EDAK A + L G  ++ RPVRLD
Sbjct: 299  VVSDFFNSVASVASLRIPTDQESGRPKGFAYVTFNSVEDAKNAFEQLNGSDLNGRPVRLD 358

Query: 1024 FSSPRPNN 1047
            ++ PR NN
Sbjct: 359  YAKPRDNN 366



 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 37/135 (27%), Positives = 67/135 (49%)
 Frame = +1

Query: 643  DFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNL 822
            D ++ S + ++ ++ + +E   +    + S  + A    + ++  D  S    TL++GNL
Sbjct: 132  DSDSDSDSSESEEKSESEEPSKKRKAEESSEEEEAPKKAKTEEVADDKS----TLWVGNL 187

Query: 823  SFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYID 1002
             +  D   +   F       S R+ T  E+ + +GFGYV F+  E A+KA DA  G  ++
Sbjct: 188  GWGIDDAILLAEFEDCEGAKSARVVTDRESGRSRGFGYVDFATNEQAQKAYDAKSGALLE 247

Query: 1003 NRPVRLDFSSPRPNN 1047
             R +RLDF++    N
Sbjct: 248  GREMRLDFAAKDAGN 262


>gi|21309|emb|CAA41023.1| 28kD RNA binding protein [Spinacia oleracea]
          Length = 226

 Score =  127 bits (319), Expect = 4e-28
 Identities = 70/180 (38%), Positives = 111/180 (61%)
 Frame = +1

Query: 502  ATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQ 681
            A +FVG L + +D E L   F+  G V  A VIY R TDRSRG+G+V       AEKA++
Sbjct: 48   AKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 107

Query: 682  EMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELF 861
             + G ++DGR +   ++ + P G+ +RA + GD   EPS  +++GNL ++ D   + +LF
Sbjct: 108  LLNGYDMDGRQLT--VNKAAPRGSPERAPR-GDF--EPSCRVYVGNLPWDVDTSRLEQLF 162

Query: 862  AKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRP 1041
            ++HG+VVS R+ +  ET + +GFG+V  S+  +   A+ AL G+ +D R VR++ +  RP
Sbjct: 163  SEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERP 222


>gi|99565|pir||S15348 RNA-binding protein, 28K - spinach
          Length = 233

 Score =  127 bits (319), Expect = 4e-28
 Identities = 70/180 (38%), Positives = 111/180 (61%)
 Frame = +1

Query: 502  ATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQ 681
            A +FVG L + +D E L   F+  G V  A VIY R TDRSRG+G+V       AEKA++
Sbjct: 55   AKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 114

Query: 682  EMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELF 861
             + G ++DGR +   ++ + P G+ +RA + GD   EPS  +++GNL ++ D   + +LF
Sbjct: 115  LLNGYDMDGRQLT--VNKAAPRGSPERAPR-GDF--EPSCRVYVGNLPWDVDTSRLEQLF 169

Query: 862  AKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRP 1041
            ++HG+VVS R+ +  ET + +GFG+V  S+  +   A+ AL G+ +D R VR++ +  RP
Sbjct: 170  SEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERP 229


>gi|133247|sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplast (28RNP)
          Length = 233

 Score =  127 bits (319), Expect = 4e-28
 Identities = 70/180 (38%), Positives = 111/180 (61%)
 Frame = +1

Query: 502  ATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQ 681
            A +FVG L + +D E L   F+  G V  A VIY R TDRSRG+G+V       AEKA++
Sbjct: 55   AKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 114

Query: 682  EMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELF 861
             + G ++DGR +   ++ + P G+ +RA + GD   EPS  +++GNL ++ D   + +LF
Sbjct: 115  LLNGYDMDGRQLT--VNKAAPRGSPERAPR-GDF--EPSCRVYVGNLPWDVDTSRLEQLF 169

Query: 862  AKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRP 1041
            ++HG+VVS R+ +  ET + +GFG+V  S+  +   A+ AL G+ +D R VR++ +  RP
Sbjct: 170  SEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERP 229


>gi|100903|pir||S23780 nucleic acid-binding protein - maize
 gi|168526|gb|AAA33486.1| nucleic acid-binding protein
          Length = 303

 Score =  113 bits (282), Expect = 7e-24
 Identities = 62/181 (34%), Positives = 105/181 (58%), Gaps = 1/181 (0%)
 Frame = +1

Query: 502  ATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQ 681
            A ++VG L + +D E L + F+  G V  A VIY R TD+SRG+G+V       AEKA++
Sbjct: 125  AKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRETDQSRGFGFVTMSTVEEAEKAVE 184

Query: 682  EMQGKEIDGRPINCDMSTSKPAGNN-DRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFEL 858
                 +++GR +   ++ + P G+  DR  +     S PS  +++GNL +  D   + EL
Sbjct: 185  MFHRYDVNGRLLT--VNKAAPRGSRVDRPPR----QSGPSLRIYVGNLPWQVDDSRLVEL 238

Query: 859  FAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPR 1038
            F++HG+VV  R+    ET + +GFG+V  ++ ++   A+ AL G+ +D R +R++ +  R
Sbjct: 239  FSEHGKVVDARVVYDRETGRSRGFGFVTMASQDELDDAIAALDGQSLDGRALRVNVAEER 298

Query: 1039 P 1041
            P
Sbjct: 299  P 299


>gi|12230584|sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)
 gi|100293|pir||S20069 ribonucleoprotein A, 29K - wood tobacco
 gi|19754|emb|CAA43427.1| 29kD A ribonucleoprotein [Nicotiana sylvestris]
          Length = 273

 Score =  112 bits (281), Expect = 9e-24
 Identities = 60/180 (33%), Positives = 102/180 (56%), Gaps = 2/180 (1%)
 Frame = +1

Query: 508  IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 687
            IFVG L +S D   L + FE  G V    VIY++ T RSRG+G+V   +K   E A Q+ 
Sbjct: 89   IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQF 148

Query: 688  QGKEIDGRP--INCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELF 861
             G E+DGR   +N      K   ++ R    G    + S+ +++GNL++  D+DA+  LF
Sbjct: 149  NGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLF 208

Query: 862  AKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRP 1041
            ++ G+VV  ++    ++ + +GFG+V +S+ E+   A+++L G  ++ R +R+  +  RP
Sbjct: 209  SEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARP 268



 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 28/81 (34%), Positives = 44/81 (54%)
 Frame = +1

Query: 793  PSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKA 972
            P   +F+GNL F+AD  A+ ELF + G V  V +     T + +GFG+V  S+ E+ + A
Sbjct: 85   PDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAA 144

Query: 973  LDALQGEYIDNRPVRLDFSSP 1035
                 G  +D R +R++   P
Sbjct: 145  CQQFNGYELDGRALRVNSGPP 165


>gi|1076305|pir||S53492 RNA-binding protein cp31 precursor - Arabidopsis thaliana
 gi|681906|dbj|BAA06520.1| cp31 [Arabidopsis thaliana]
          Length = 314

 Score =  112 bits (279), Expect = 2e-23
 Identities = 59/181 (32%), Positives = 110/181 (60%), Gaps = 1/181 (0%)
 Frame = +1

Query: 502  ATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQ 681
            A +FVG L++ ++ + L   FE  G V  A VIY R TD+SRG+G+V   +   AE A++
Sbjct: 135  AKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVE 194

Query: 682  EMQGKEIDGRPINCDMSTSKPAGNN-DRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFEL 858
            +    +++GR +   ++ + P G+  +RA +      EP+  +++GNL ++ D   + +L
Sbjct: 195  KFNRYDLNGRLLT--VNKAAPRGSRPERAPRV----YEPAFRVYVGNLPWDVDNGRLEQL 248

Query: 859  FAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPR 1038
            F++HG+VV  R+    ET + +GFG+V  S++++  +A+ AL G+ ++ R +R++ +  R
Sbjct: 249  FSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 308

Query: 1039 P 1041
            P
Sbjct: 309  P 309


>gi|15233980|ref|NP_194208.1| 31 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein
            cp31); protein id: At4g24770.1, supported by cDNA:
            gi_15294253, supported by cDNA: gi_387568 [Arabidopsis
            thaliana]
 gi|464662|sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein
            RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding
            protein cp31)
 gi|282884|pir||S28057 RNA-binding protein RNP-T precursor - Arabidopsis thaliana
 gi|16490|emb|CAA46347.1| RNA-binding protein [Arabidopsis thaliana]
 gi|387569|gb|AAA32860.1| 31 kDa RNA binding protein
 gi|475718|gb|AAA18378.1| RNA-binding protein 1
 gi|4220513|emb|CAA22986.1| RNA-binding protein RNP-T precursor [Arabidopsis thaliana]
 gi|7269328|emb|CAB79387.1| RNA-binding protein RNP-T precursor [Arabidopsis thaliana]
 gi|737169|prf||1921382A RNA-binding protein
          Length = 329

 Score =  112 bits (279), Expect = 2e-23
 Identities = 59/181 (32%), Positives = 110/181 (60%), Gaps = 1/181 (0%)
 Frame = +1

Query: 502  ATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQ 681
            A +FVG L++ ++ + L   FE  G V  A VIY R TD+SRG+G+V   +   AE A++
Sbjct: 150  AKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVE 209

Query: 682  EMQGKEIDGRPINCDMSTSKPAGNN-DRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFEL 858
            +    +++GR +   ++ + P G+  +RA +      EP+  +++GNL ++ D   + +L
Sbjct: 210  KFNRYDLNGRLLT--VNKAAPRGSRPERAPRV----YEPAFRVYVGNLPWDVDNGRLEQL 263

Query: 859  FAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPR 1038
            F++HG+VV  R+    ET + +GFG+V  S++++  +A+ AL G+ ++ R +R++ +  R
Sbjct: 264  FSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323

Query: 1039 P 1041
            P
Sbjct: 324  P 324


>gi|15294254|gb|AAK95304.1|AF410318_1 AT4g24770/F22K18_30 [Arabidopsis thaliana]
 gi|23505889|gb|AAN28804.1| At4g24770/F22K18_30 [Arabidopsis thaliana]
          Length = 329

 Score =  112 bits (279), Expect = 2e-23
 Identities = 59/181 (32%), Positives = 110/181 (60%), Gaps = 1/181 (0%)
 Frame = +1

Query: 502  ATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQ 681
            A +FVG L++ ++ + L   FE  G V  A VIY R TD+SRG+G+V   +   AE A++
Sbjct: 150  AKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVE 209

Query: 682  EMQGKEIDGRPINCDMSTSKPAGNN-DRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFEL 858
            +    +++GR +   ++ + P G+  +RA +      EP+  +++GNL ++ D   + +L
Sbjct: 210  KFNRYDLNGRLLT--VNKAAPRGSRPERAPRV----YEPAFRVYVGNLPWDVDNGRLEQL 263

Query: 859  FAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPR 1038
            F++HG+VV  R+    ET + +GFG+V  S++++  +A+ AL G+ ++ R +R++ +  R
Sbjct: 264  FSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323

Query: 1039 P 1041
            P
Sbjct: 324  P 324


>gi|681908|dbj|BAA06521.1| cp31 [Arabidopsis thaliana]
          Length = 304

 Score =  112 bits (279), Expect = 2e-23
 Identities = 59/181 (32%), Positives = 110/181 (60%), Gaps = 1/181 (0%)
 Frame = +1

Query: 502  ATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQ 681
            A +FVG L++ ++ + L   FE  G V  A VIY R TD+SRG+G+V   +   AE A++
Sbjct: 125  AKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVE 184

Query: 682  EMQGKEIDGRPINCDMSTSKPAGNN-DRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFEL 858
            +    +++GR +   ++ + P G+  +RA +      EP+  +++GNL ++ D   + +L
Sbjct: 185  KFNRYDLNGRLLT--VNKAAPRGSRPERAPRV----YEPAFRVYVGNLPWDVDNGRLEQL 238

Query: 859  FAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPR 1038
            F++HG+VV  R+    ET + +GFG+V  S++++  +A+ AL G+ ++ R +R++ +  R
Sbjct: 239  FSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 298

Query: 1039 P 1041
            P
Sbjct: 299  P 299


>gi|629557|pir||S49030 RNA-binding protein RNP-D precursor - Arabidopsis thaliana
            (fragment)
 gi|510240|emb|CAA43420.1| RNA binding protein [Arabidopsis thaliana]
          Length = 310

 Score =  112 bits (279), Expect = 2e-23
 Identities = 59/181 (32%), Positives = 110/181 (60%), Gaps = 1/181 (0%)
 Frame = +1

Query: 502  ATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQ 681
            A +FVG L++ ++ + L   FE  G V  A VIY R TD+SRG+G+V   +   AE A++
Sbjct: 131  AKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVE 190

Query: 682  EMQGKEIDGRPINCDMSTSKPAGNN-DRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFEL 858
            +    +++GR +   ++ + P G+  +RA +      EP+  +++GNL ++ D   + +L
Sbjct: 191  KFNRYDLNGRLLT--VNKAAPRGSRPERAPRV----YEPAFRVYVGNLPWDVDNGRLEQL 244

Query: 859  FAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPR 1038
            F++HG+VV  R+    ET + +GFG+V  S++++  +A+ AL G+ ++ R +R++ +  R
Sbjct: 245  FSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 304

Query: 1039 P 1041
            P
Sbjct: 305  P 305


>gi|475719|gb|AAA18379.1| RNA-binding protein 2
          Length = 315

 Score =  112 bits (279), Expect = 2e-23
 Identities = 59/181 (32%), Positives = 110/181 (60%), Gaps = 1/181 (0%)
 Frame = +1

Query: 502  ATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQ 681
            A +FVG L++ ++ + L   FE  G V  A VIY R TD+SRG+G+V   +   AE A++
Sbjct: 136  AKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVE 195

Query: 682  EMQGKEIDGRPINCDMSTSKPAGNN-DRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFEL 858
            +    +++GR +   ++ + P G+  +RA +      EP+  +++GNL ++ D   + +L
Sbjct: 196  KFNRYDLNGRLLT--VNKAAPRGSRPERAPRV----YEPAFRVYVGNLPWDVDNGRLEQL 249

Query: 859  FAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPR 1038
            F++HG+VV  R+    ET + +GFG+V  S++++  +A+ AL G+ ++ R +R++ +  R
Sbjct: 250  FSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 309

Query: 1039 P 1041
            P
Sbjct: 310  P 310


>gi|99684|pir||S20940 DNA-binding protein - Arabidopsis thaliana
          Length = 246

 Score =  112 bits (279), Expect = 2e-23
 Identities = 59/181 (32%), Positives = 110/181 (60%), Gaps = 1/181 (0%)
 Frame = +1

Query: 502  ATIFVGRLSWSIDDEWLKKEFE