MedBlast(0.8) Results

• Direct References
• Indirect References
• Options
• BLASTN
• BLASTX

Direct References:

References Summary:

1. Bahr A, Moller-Rieker S, Hankeln T, Kraemer C, Protin U, Schmidt ER
   The nucleotide sequence of a 39 kb segment of yeast chromosome IV: 12 new open reading frames, nine known genes and one genes for Gly-tRNA.
   Yeast 1997 Feb;13(2):163-9
   PMID: 9046097
2. Ljungdahl PO, Gimeno CJ, Styles CA, Fink GR
   SHR3: a novel component of the secretory pathway specifically required for localization of amino acid permeases in yeast.
   Cell 1992 Oct 30;71(3):463-78
   PMID: 1423607

Indirect References:

References Summary:

1. Matijekova A, Sychrova H
   Biogenesis of Candida albicans Can1 permease expressed in Saccharomyces cerevisiae.
   FEBS Lett 1997 May 12;408(1):89-93
   PMID: 9180275
2. Martinez P, Ljungdahl PO
   The SHR3 homologue from S. pombe demonstrates a conserved function of ER packaging chaperones.
   J Cell Sci 2000 Dec;113 Pt 23:4351-62
   PMID: 11069779
3. Gilstring CF, Ljungdahl PO
   A method for determining the in vivo topology of yeast polytopic membrane proteins demonstrates that Gap1p fully integrates into the membrane independently of Shr3p.
   J Biol Chem 2000 Oct 6;275(40):31488-95
   PMID: 10903320
4. Klasson H, Fink GR, Ljungdahl PO
   Ssy1p and Ptr3p are plasma membrane components of a yeast system that senses extracellular amino acids.
   Mol Cell Biol 1999 Aug;19(8):5405-16
   PMID: 10409731
5. Gilstring CF, Melin-Larsson M, Ljungdahl PO
   Shr3p mediates specific COPII coatomer-cargo interactions required for the packaging of amino acid permeases into ER-derived transport vesicles.
   Mol Biol Cell 1999 Nov;10(11):3549-65
   PMID: 10564255
6. Kuehn MJ, Schekman R, Ljungdahl PO
   Amino acid permeases require COPII components and the ER resident membrane protein Shr3p for packaging into transport vesicles in vitro.
   J Cell Biol 1996 Nov;135(3):585-95
   PMID: 8909535
7. Horak J, Kotyk A
   Functional analysis of apf1 mutation causing defective amino acid transport in Saccharomyces cerevisiae.
   Biochem Mol Biol Int 1993 Apr;29(5):907-12
   PMID: 8389634
8. Wright MB, Ramos J, Gomez MJ, Moulder K, Scherrer M, Munson G, Gaber RF
   Potassium transport by amino acid permeases in Saccharomyces cerevisiae.
   J Biol Chem 1997 May 23;272(21):13647-52
   PMID: 9153214
9. Wang Q, Chang A
   Eps1, a novel PDI-related protein involved in ER quality control in yeast.
   EMBO J 1999 Nov 1;18(21):5972-82
   PMID: 10545109
10. Rentsch D, Hirner B, Schmelzer E, Frommer WB
    Salt stress-induced proline transporters and salt stress-repressed broad specificity amino acid permeases identified by suppression of a yeast amino acid permease-targeting mutant.
    Plant Cell 1996 Aug;8(8):1437-46
    PMID: 8776904
11. Fujimura H
    Molecular cloning of Saccharomyces cerevisiae MLF4/SSH4 gene which confers the immunosuppressant leflunomide resistance.
    Biochem Biophys Res Commun 1998 May 19;246(2):378-81
    PMID: 9610367
12. Gimeno CJ, Ljungdahl PO, Styles CA, Fink GR
    Unipolar cell divisions in the yeast S. cerevisiae lead to filamentous growth: regulation by starvation and RAS.
    Cell 1992 Mar 20;68(6):1077-90
    PMID: 1547504
13. Kuehn MJ, Herrmann JM, Schekman R
    COPII-cargo interactions direct protein sorting into ER-derived transport vesicles.
    Nature 1998 Jan 8;391(6663):187-90
    PMID: 9428766
14. Opekarova M, Robl I, Tanner W
    Phosphatidyl ethanolamine is essential for targeting the arginine transporter Can1p to the plasma membrane of yeast.
    Biochim Biophys Acta 2002 Aug 19;1564(1):9-13
    PMID: 12100990
15. Chianelli MS, Stella CA, Saenz DA, Ramos EH, Kotliar N, Mattoon JR
    Isolation of a trifluoroleucine-resistant mutant of Saccharomyces cerevisiae deficient in both high- and low-affinity L-leucine transport.
    Cell Mol Biol (Noisy-le-grand) 1996 Sep;42(6):847-57
    PMID: 8891352
16. Gilstring CF, Melin-Larsson M, Moliner AL, Ljungdahl PO
    SHR3 function is linked to cOPII mediated ER vesicle formation.
    Folia Microbiol (Praha) 1996;41(1):93
    PMID: 9090835
17. Matejckova A, Sychrova H
    Properties of Candida albicans CAN1 permease expressed in Saccharomyces cerevisiae.
    Folia Microbiol (Praha) 1996;41(1):107-9
    PMID: 9090844
18. Palkova Z, Janderova B, Gabriel J, Zikanova B, Pospisek M, Forstova J
    Ammonia mediates communication between yeast colonies.
    Nature 1997 Dec 4;390(6659):532-6
    PMID: 9394006

Options:

• Limit of E-value: 1e-20
• Limit of Length: 100000
• Limit of references returned each search: 40
• Limit of retry times: 7
• Direct references: Yes
• Indirect references: Yes
• Allow symbol with hyphen: Yes
• Use stop word list: Yes
• Thesaurus:
  • Saccharomyces cerevisiae (Version: 20021123.0)

 
BLASTN 2.2.5 [Nov-16-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
RID: 1048644541-018633-27254
Query= ORFN:YDL212W SHR3 SGDID:S0002371, Chr IV from 78427-79059
         (633 letters)

Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences) 
           1,709,165 sequences; 7,961,311,582 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|1431353|emb|Z74260.1|SCYDL212W S.cerevisiae chromosome IV rea...  1255   0.0  
gi|1429338|emb|X99000.1|CS39KBCIV S.cerevisiae 39kb DNA segment ...  1255   0.0  
gi|172571|gb|L01264.1|YSCSECRE Saccharomyces cerevisiae secretor...  1217   0.0  
gi|12331469|gb|AC074224.3|AC074224 Mus musculus chromosome 2 clo...    44   0.26 
gi|24366641|emb|AL845368.6| Mouse DNA sequence from clone RP23-2...    44   0.26 
gi|2983659|gb|AE000729.1| Aquifex aeolicus VF5 section 61 of 109...    42   1.0  
gi|22758600|gb|AC127390.4| Homo sapiens BAC clone RP11-361H16 fr...    42   1.0  
gi|1279234|emb|Z71258.1|CEC01H6 Caenorhabditis elegans cosmid C0...    42   1.0  
gi|9926422|emb|AL137800.12| Human DNA sequence from clone RP1-12...    42   1.0  
gi|29124188|gb|AC105300.22| Mus musculus chromosome 17 clone rp2...    40   4.0  
gi|27151362|gb|AC026802.8| Homo sapiens chromosome 16 clone CTD-...    40   4.0  
gi|22450567|gb|AC007602.6| Homo sapiens chromosome 16 clone RP11...    40   4.0  
gi|21322200|gb|AC004875.2| Homo sapiens PAC clone RP4-745K6 from...    40   4.0  
gi|17105285|gb|AC011339.5| Homo sapiens chromosome 5 clone CTC-2...    40   4.0  
gi|14165313|gb|AC051624.6|AC051624 Genomic Sequence for Oryza sa...    40   4.0  
gi|25168673|emb|AL772390.8| Mouse DNA sequence from clone RP23-4...    40   4.0  
gi|16751485|dbj|AP001881.4| Homo sapiens genomic DNA, chromosome...    40   4.0  
gi|16751497|dbj|AP003078.2| Homo sapiens genomic DNA, chromosome...    40   4.0  
gi|7105517|gb|AC010291.5|AC010291 Homo sapiens chromosome 5 clon...    40   4.0  
gi|6453843|gb|AC010072.5|AC010072 Homo sapiens chromosome 14q31 ...    40   4.0  
gi|21743318|dbj|AP003415.3| Oryza sativa (japonica cultivar-grou...    40   4.0  
gi|20804776|dbj|AP003303.4| Oryza sativa (japonica cultivar-grou...    40   4.0  
gi|20804545|dbj|AP003232.3| Oryza sativa (japonica cultivar-grou...    40   4.0  
gi|18677097|dbj|AP003216.3| Oryza sativa (japonica cultivar-grou...    40   4.0  
gi|7228436|dbj|AP001366.1| Oryza sativa (japonica cultivar-group...    40   4.0  
gi|21212152|emb|AL670603.6| Mouse DNA sequence from clone RP23-2...    40   4.0  
gi|14325503|dbj|AP000996.2| Thermoplasma volcanium genomic DNA, ...    40   4.0  

ALIGNMENTS
>gi|1431353|emb|Z74260.1|SCYDL212W S.cerevisiae chromosome IV reading frame ORF YDL212w
          Length = 1327

 Score = 1255 bits (633), Expect = 0.0
 Identities = 633/633 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1    atgttctcatattcagatttctgttctatcggtacggccatgatcttatcggccacaacg 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460  atgttctcatattcagatttctgttctatcggtacggccatgatcttatcggccacaacg 519

                                                                        
Query: 61   ttcctaatgggtgttttcttcagtaacatgccatacgattatcatcttttatttaatcct 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520  ttcctaatgggtgttttcttcagtaacatgccatacgattatcatcttttatttaatcct 579

                                                                        
Query: 121  aactctactcaagagcatttcgatttggcactgagacattaccaaattttacatgagact 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580  aactctactcaagagcatttcgatttggcactgagacattaccaaattttacatgagact 639

                                                                        
Query: 181  ccattgccggtgattgttactttgtgcgttgttgccggtattggcttagttggtggtaca 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640  ccattgccggtgattgttactttgtgcgttgttgccggtattggcttagttggtggtaca 699

                                                                        
Query: 241  attaaggttttcaagccaaaccctgaactgcagatgtttgagtattgttcattggggttg 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700  attaaggttttcaagccaaaccctgaactgcagatgtttgagtattgttcattggggttg 759

                                                                        
Query: 301  tacgtgttggctatctgtgtgtttctcactaatgtgaaaacaggtatcgactgttctgtg 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760  tacgtgttggctatctgtgtgtttctcactaatgtgaaaacaggtatcgactgttctgtg 819

                                                                        
Query: 361  agccataattggggagaagttacggaaaatcagggtttggcagttattgcttcctccaac 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820  agccataattggggagaagttacggaaaatcagggtttggcagttattgcttcctccaac 879

                                                                        
Query: 421  ataattttattagttatgtttgccggtgttatcatcctacaaattggtttgtggtacagt 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880  ataattttattagttatgtttgccggtgttatcatcctacaaattggtttgtggtacagt 939

                                                                        
Query: 481  aactgggatttgcaaaaaagattaaaggagttttatgctcaagaagaaagagaagctgcc 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940  aactgggatttgcaaaaaagattaaaggagttttatgctcaagaagaaagagaagctgcc 999

                                                                        
Query: 541  aatgccggtaaaaagactgagaaagttgacaatgcgaaaaagaatgataacaaatctaaa 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 aatgccggtaaaaagactgagaaagttgacaatgcgaaaaagaatgataacaaatctaaa 1059

                                             
Query: 601  ggtgctcaaaagaggaagaacgccaaaaaatag 633
            |||||||||||||||||||||||||||||||||
Sbjct: 1060 ggtgctcaaaagaggaagaacgccaaaaaatag 1092


>gi|1429338|emb|X99000.1|CS39KBCIV S.cerevisiae 39kb DNA segment of chromosome IV
          Length = 39090

 Score = 1255 bits (633), Expect = 0.0
 Identities = 633/633 (100%)
 Strand = Plus / Plus

                                                                         
Query: 1     atgttctcatattcagatttctgttctatcggtacggccatgatcttatcggccacaacg 60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11079 atgttctcatattcagatttctgttctatcggtacggccatgatcttatcggccacaacg 11138

                                                                         
Query: 61    ttcctaatgggtgttttcttcagtaacatgccatacgattatcatcttttatttaatcct 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11139 ttcctaatgggtgttttcttcagtaacatgccatacgattatcatcttttatttaatcct 11198

                                                                         
Query: 121   aactctactcaagagcatttcgatttggcactgagacattaccaaattttacatgagact 180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11199 aactctactcaagagcatttcgatttggcactgagacattaccaaattttacatgagact 11258

                                                                         
Query: 181   ccattgccggtgattgttactttgtgcgttgttgccggtattggcttagttggtggtaca 240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11259 ccattgccggtgattgttactttgtgcgttgttgccggtattggcttagttggtggtaca 11318

                                                                         
Query: 241   attaaggttttcaagccaaaccctgaactgcagatgtttgagtattgttcattggggttg 300
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11319 attaaggttttcaagccaaaccctgaactgcagatgtttgagtattgttcattggggttg 11378

                                                                         
Query: 301   tacgtgttggctatctgtgtgtttctcactaatgtgaaaacaggtatcgactgttctgtg 360
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11379 tacgtgttggctatctgtgtgtttctcactaatgtgaaaacaggtatcgactgttctgtg 11438

                                                                         
Query: 361   agccataattggggagaagttacggaaaatcagggtttggcagttattgcttcctccaac 420
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11439 agccataattggggagaagttacggaaaatcagggtttggcagttattgcttcctccaac 11498

                                                                         
Query: 421   ataattttattagttatgtttgccggtgttatcatcctacaaattggtttgtggtacagt 480
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11499 ataattttattagttatgtttgccggtgttatcatcctacaaattggtttgtggtacagt 11558

                                                                         
Query: 481   aactgggatttgcaaaaaagattaaaggagttttatgctcaagaagaaagagaagctgcc 540
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11559 aactgggatttgcaaaaaagattaaaggagttttatgctcaagaagaaagagaagctgcc 11618

                                                                         
Query: 541   aatgccggtaaaaagactgagaaagttgacaatgcgaaaaagaatgataacaaatctaaa 600
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11619 aatgccggtaaaaagactgagaaagttgacaatgcgaaaaagaatgataacaaatctaaa 11678

                                              
Query: 601   ggtgctcaaaagaggaagaacgccaaaaaatag 633
             |||||||||||||||||||||||||||||||||
Sbjct: 11679 ggtgctcaaaagaggaagaacgccaaaaaatag 11711


>gi|172571|gb|L01264.1|YSCSECRE Saccharomyces cerevisiae secretory component gene, complete cds
          Length = 1372

 Score = 1217 bits (614), Expect = 0.0
 Identities = 630/633 (99%), Gaps = 3/633 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    atgttctcatattcagatttctgttctatcggtacggccatgatcttatcggccacaacg 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451  atgttctcatattcagatttctgttctatcggtacggccatgatcttatcggccacaacg 510

                                                                        
Query: 61   ttcctaatgggtgttttcttcagtaacatgccatacgattatcatcttttatttaatcct 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511  ttcctaatgggtgttttcttcagtaacatgccatacgattatcatcttttatttaatcct 570

                                                                        
Query: 121  aactctactcaagagcatttcgatttggcactgagacattaccaaattttacatgagact 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571  aactctactcaagagcatttcgatttggcactgagacattaccaaattttacatgagact 630

                                                                        
Query: 181  ccattgccggtgattgttactttgtgcgttgttgccggtattggcttagttggtggtaca 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631  ccattgccggtgattgttactttgtgcgttgttgccggtattggcttagttggtggtaca 690

                                                                        
Query: 241  attaaggttttcaagccaaaccctgaactgcagatgtttgagtattgttcattggggttg 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691  attaaggttttcaagccaaaccctgaactgcagatgtttgagtattgttcattggggttg 750

                                                                        
Query: 301  tacgtgttggctatctgtgtgtttctcactaatgtgaaaacaggtatcgactgttctgtg 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751  tacgtgttggctatctgtgtgtttctcactaatgtgaaaacaggtatcgactgttctgtg 810

                                                                        
Query: 361  agccataattggggagaagttacggaaaatcagggtttggcagttattgcttcctccaac 420
            |||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 811  agccataatt-gggagaagttacg--aaatcagggtttggcagttattgcttcctccaac 867

                                                                        
Query: 421  ataattttattagttatgtttgccggtgttatcatcctacaaattggtttgtggtacagt 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868  ataattttattagttatgtttgccggtgttatcatcctacaaattggtttgtggtacagt 927

                                                                        
Query: 481  aactgggatttgcaaaaaagattaaaggagttttatgctcaagaagaaagagaagctgcc 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928  aactgggatttgcaaaaaagattaaaggagttttatgctcaagaagaaagagaagctgcc 987

                                                                        
Query: 541  aatgccggtaaaaagactgagaaagttgacaatgcgaaaaagaatgataacaaatctaaa 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988  aatgccggtaaaaagactgagaaagttgacaatgcgaaaaagaatgataacaaatctaaa 1047

                                             
Query: 601  ggtgctcaaaagaggaagaacgccaaaaaatag 633
            |||||||||||||||||||||||||||||||||
Sbjct: 1048 ggtgctcaaaagaggaagaacgccaaaaaatag 1080


>gi|12331469|gb|AC074224.3|AC074224 Mus musculus chromosome 2 clone RP23-43C3 strain C57BL6/J, complete
             sequence
          Length = 188989

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 583   aatgataacaaatctaaaggtgctca 608
             |||||||| |||||||||||||||||
Sbjct: 68853 aatgataagaaatctaaaggtgctca 68828


>gi|24366641|emb|AL845368.6| Mouse DNA sequence from clone RP23-206D14 on chromosome 2, complete
             sequence
          Length = 159056

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 583   aatgataacaaatctaaaggtgctca 608
             |||||||| |||||||||||||||||
Sbjct: 10810 aatgataagaaatctaaaggtgctca 10835


>gi|2983659|gb|AE000729.1| Aquifex aeolicus VF5 section 61 of 109 of the complete genome
          Length = 15131

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 607   caaaagaggaagaacgccaaa 627
             |||||||||||||||||||||
Sbjct: 10886 caaaagaggaagaacgccaaa 10906


>gi|22758600|gb|AC127390.4| Homo sapiens BAC clone RP11-361H16 from 4, complete sequence
          Length = 48860

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 599  aaggtgctcaaaagaggaaga 619
            |||||||||||||||||||||
Sbjct: 9513 aaggtgctcaaaagaggaaga 9493


>gi|1279234|emb|Z71258.1|CEC01H6 Caenorhabditis elegans cosmid C01H6, complete sequence
          Length = 40359

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 576  gaaaaagaatgataacaaatctaaa 600
            |||||||||| ||||||||||||||
Sbjct: 8179 gaaaaagaataataacaaatctaaa 8203


>gi|9926422|emb|AL137800.12| Human DNA sequence from clone RP1-127C7 on chromosome 1q25.1-31.1
              Contains the gene for KIAA0250 protein, the NCF2
              (neutrophil cytosolic factor 2 (65kD,chronic granulomatous
              disease, autosomal 2) gene, the 3' end of the gene for
              ARPC5 (actin related protein 2/3 complex, subunit 5 (16
              kD)), ESTs, STSs, GSSs and a CpG island, complete sequence
          Length = 185832

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 102    tcatcttttatttaatcctaa 122
              |||||||||||||||||||||
Sbjct: 154957 tcatcttttatttaatcctaa 154977


>gi|29124188|gb|AC105300.22| Mus musculus chromosome 17 clone rp23-291e5 strain C57BL/6J, complete
             sequence
          Length = 168883

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   actctactcaagagcatttc 141
             ||||||||||||||||||||
Sbjct: 43811 actctactcaagagcatttc 43830


>gi|27151362|gb|AC026802.8| Homo sapiens chromosome 16 clone CTD-2545G24, complete sequence
          Length = 188918

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    ggtgttttcttcagtaacat 89
             ||||||||||||||||||||
Sbjct: 47636 ggtgttttcttcagtaacat 47617


>gi|22450567|gb|AC007602.6| Homo sapiens chromosome 16 clone RP11-2D4, complete sequence
          Length = 167094

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     ggtgttttcttcagtaacat 89
              ||||||||||||||||||||
Sbjct: 114072 ggtgttttcttcagtaacat 114053


>gi|21322200|gb|AC004875.2| Homo sapiens PAC clone RP4-745K6 from 7q31-q32, complete sequence
          Length = 130607

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 412   tcctccaacataattttatt 431
             ||||||||||||||||||||
Sbjct: 90266 tcctccaacataattttatt 90285


>gi|17105285|gb|AC011339.5| Homo sapiens chromosome 5 clone CTC-260J12, complete sequence
          Length = 152560

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 495  aaaaagattaaaggagtttt 514
            ||||||||||||||||||||
Sbjct: 7229 aaaaagattaaaggagtttt 7210


>gi|14165313|gb|AC051624.6|AC051624 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0036B06, from Chromosome 10, complete sequence
          Length = 148263

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 524   aagaaagagaagctgccaat 543
             ||||||||||||||||||||
Sbjct: 41355 aagaaagagaagctgccaat 41336


>gi|25168673|emb|AL772390.8| Mouse DNA sequence from clone RP23-446N8 on chromosome 4, complete
             sequence
          Length = 59040

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 322   tttctcactaatgtgaaaac 341
             ||||||||||||||||||||
Sbjct: 21728 tttctcactaatgtgaaaac 21709


>gi|16751485|dbj|AP001881.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-106E8, complete
              sequence
          Length = 149100

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 103    catcttttatttaatcctaa 122
              ||||||||||||||||||||
Sbjct: 134195 catcttttatttaatcctaa 134176


>gi|16751497|dbj|AP003078.2| Homo sapiens genomic DNA, chromosome 11q clone:CTD-2504H21, complete
            sequence
          Length = 138633

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 103  catcttttatttaatcctaa 122
            ||||||||||||||||||||
Sbjct: 2381 catcttttatttaatcctaa 2362


>gi|7105517|gb|AC010291.5|AC010291 Homo sapiens chromosome 5 clone CTB-130E24, complete sequence
          Length = 126169

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 495   aaaaagattaaaggagtttt 514
             ||||||||||||||||||||
Sbjct: 58734 aaaaagattaaaggagtttt 58715


>gi|6453843|gb|AC010072.5|AC010072 Homo sapiens chromosome 14q31 clone CTD-2173I4 containing TSHR gene,
             partial cds; and unknown gene, complete sequence
          Length = 124347

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 494   aaaaaagattaaaggagttt 513
             ||||||||||||||||||||
Sbjct: 22521 aaaaaagattaaaggagttt 22540


>gi|21743318|dbj|AP003415.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1402_H07
          Length = 118359

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    ggtgttttcttcagtaacat 89
             ||||||||||||||||||||
Sbjct: 61533 ggtgttttcttcagtaacat 61552


>gi|20804776|dbj|AP003303.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0704D04
          Length = 147638

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 524   aagaaagagaagctgccaat 543
             ||||||||||||||||||||
Sbjct: 49476 aagaaagagaagctgccaat 49457


>gi|20804545|dbj|AP003232.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0034E02
          Length = 165497

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 524    aagaaagagaagctgccaat 543
              ||||||||||||||||||||
Sbjct: 114196 aagaaagagaagctgccaat 114177


>gi|18677097|dbj|AP003216.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0090K04
          Length = 152556

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 524   aagaaagagaagctgccaat 543
             ||||||||||||||||||||
Sbjct: 17594 aagaaagagaagctgccaat 17575


>gi|7228436|dbj|AP001366.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0469E09
          Length = 146081

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 524   aagaaagagaagctgccaat 543
             ||||||||||||||||||||
Sbjct: 77925 aagaaagagaagctgccaat 77944


>gi|21212152|emb|AL670603.6| Mouse DNA sequence from clone RP23-276M23 on chromosome 4, complete
              sequence
          Length = 173696

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 502    ttaaaggagttttatgctcaagaa 525
              |||||||||||||||||| |||||
Sbjct: 127233 ttaaaggagttttatgcttaagaa 127256


>gi|14325503|dbj|AP000996.2| Thermoplasma volcanium genomic DNA, complete sequence, section 6/6
          Length = 278604

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   gactccattgccggtgattg 196
             ||||||||||||||||||||
Sbjct: 53784 gactccattgccggtgattg 53765


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
  or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Mar 24, 2003 11:55 PM
  Number of letters in database: -628,623,006
  Number of sequences in database:  1,709,165
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,387,191
Number of Sequences: 1709165
Number of extensions: 3387191
Number of successful extensions: 70067
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70010
Number of HSP's gapped (non-prelim): 56
length of query: 633
length of database: 7,961,311,582
effective HSP length: 21
effective length of query: 612
effective length of database: 7,925,419,117
effective search space: 4850356499604
effective search space used: 4850356499604
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)






 
BLASTX 2.2.5 [Nov-16-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
RID: 1048645053-022176-18074
Query= ORFN:YDL212W SHR3 SGDID:S0002371, Chr IV from 78427-79059
         (633 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           1,376,942 sequences; 442,405,847 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|6319989|ref|NP_010069.1| Protein required for appearance of a...   427   e-119
gi|401083|sp|Q02774|SHR3_YEAST Secretory component protein SHR3 ...   414   e-115
gi|28919853|gb|EAA29251.1| hypothetical protein [Neurospora crassa]    92   4e-18
gi|19112262|ref|NP_595470.1| hypothetical protein [Schizosacchar...    70   3e-11
gi|23508880|ref|NP_701548.1| hypothetical protein [Plasmodium fa...    34   1.4  
gi|27672806|ref|XP_236797.1| similar to EGF-like module containi...    34   1.4  
gi|23478605|gb|EAA15647.1| hypothetical protein [Plasmodium yoel...    34   1.4  
gi|23612445|ref|NP_704006.1| hypothetical protein [Plasmodium fa...    34   1.8  
gi|23612252|ref|NP_703832.1| hypothetical protein [Plasmodium fa...    34   1.8  
gi|23612622|ref|NP_704183.1| exonuclease i, putative [Plasmodium...    34   1.8  
gi|20900604|ref|XP_128711.1| EGF-like module containing, mucin-l...    34   1.8  
gi|4503565|ref|NP_001965.1| egf-like module containing, mucin-li...    34   1.8  
gi|21929097|dbj|BAC06133.1| seven transmembrane helix receptor [...    34   1.8  
gi|23490080|gb|EAA21939.1| hypothetical protein [Plasmodium yoel...    33   3.1  
gi|27467103|ref|NP_763740.1| glycerol ester hydrolase [Staphyloc...    33   4.0  
gi|22970875|gb|ZP_00017894.1| hypothetical protein [Chloroflexus...    33   4.0  
gi|23135075|ref|ZP_00116834.1| hypothetical protein [Cytophaga h...    32   5.3  
gi|18395937|ref|NP_566151.1| expressed protein; protein id: At3g...    32   5.3  
gi|3789932|gb|AAC67547.1| lipase precursor [Staphylococcus epide...    32   5.3  
gi|6016737|gb|AAF01563.1|AC009325_33 hypothetical protein [Arabi...    32   5.3  
gi|21290769|gb|EAA02914.1| agCP5180 [Anopheles gambiae str. PEST]      32   5.3  
gi|23490925|gb|EAA22582.1| hypothetical protein [Plasmodium yoel...    32   6.9  
gi|15239928|ref|NP_196229.1| cell division related protein-like;...    32   6.9  
gi|23508138|ref|NP_700808.1| hypothetical protein [Plasmodium fa...    32   6.9  
gi|19113643|ref|NP_596851.1| putative gmp synthase [glutamine-hy...    32   6.9  
gi|23508060|ref|NP_700730.1| hypothetical protein [Plasmodium fa...    32   9.0  
gi|6323014|ref|NP_013086.1| bile pigment transporter; Bpt1p [Sac...    32   9.0  

ALIGNMENTS
>gi|6319989|ref|NP_010069.1| Protein required for appearance of amino acid permeases on the cell
           surface; Shr3p [Saccharomyces cerevisiae]
 gi|2131248|pir||S67771 endoplasmic reticulum membrane protein SHR3 - yeast  (Saccharomyces
           cerevisiae)
 gi|1429344|emb|CAA67479.1| secretory component [Saccharomyces cerevisiae]
 gi|1431354|emb|CAA98790.1| ORF YDL212w [Saccharomyces cerevisiae]
          Length = 210

 Score =  427 bits (1098), Expect = e-119
 Identities = 210/210 (100%), Positives = 210/210 (100%)
 Frame = +1

Query: 1   MFSYSDFCSIGTAMILSATTFLMGVFFSNMPYDYHLLFNPNSTQEHFDLALRHYQILHET 180
           MFSYSDFCSIGTAMILSATTFLMGVFFSNMPYDYHLLFNPNSTQEHFDLALRHYQILHET
Sbjct: 1   MFSYSDFCSIGTAMILSATTFLMGVFFSNMPYDYHLLFNPNSTQEHFDLALRHYQILHET 60

Query: 181 PLPVIVTLCVVAGIGLVGGTIKVFKPNPELQMFEYCSLGLYVLAICVFLTNVKTGIDCSV 360
           PLPVIVTLCVVAGIGLVGGTIKVFKPNPELQMFEYCSLGLYVLAICVFLTNVKTGIDCSV
Sbjct: 61  PLPVIVTLCVVAGIGLVGGTIKVFKPNPELQMFEYCSLGLYVLAICVFLTNVKTGIDCSV 120

Query: 361 SHNWGEVTENQGLAVIASSNIILLVMFAGVIILQIGLWYSNWDLQKRLKEFYAQEEREAA 540
           SHNWGEVTENQGLAVIASSNIILLVMFAGVIILQIGLWYSNWDLQKRLKEFYAQEEREAA
Sbjct: 121 SHNWGEVTENQGLAVIASSNIILLVMFAGVIILQIGLWYSNWDLQKRLKEFYAQEEREAA 180

Query: 541 NAGKKTEKVDNAKKNDNKSKGAQKRKNAKK 630
           NAGKKTEKVDNAKKNDNKSKGAQKRKNAKK
Sbjct: 181 NAGKKTEKVDNAKKNDNKSKGAQKRKNAKK 210


>gi|401083|sp|Q02774|SHR3_YEAST Secretory component protein SHR3
 gi|172572|gb|AAA35035.1| secretory component
          Length = 209

 Score =  414 bits (1063), Expect = e-115
 Identities = 206/210 (98%), Positives = 206/210 (98%)
 Frame = +1

Query: 1   MFSYSDFCSIGTAMILSATTFLMGVFFSNMPYDYHLLFNPNSTQEHFDLALRHYQILHET 180
           MFSYSDFCSIGTAMILSATTFLMGVFFSNMPYDYHLLFNPNSTQEHFDLALRHYQILHET
Sbjct: 1   MFSYSDFCSIGTAMILSATTFLMGVFFSNMPYDYHLLFNPNSTQEHFDLALRHYQILHET 60

Query: 181 PLPVIVTLCVVAGIGLVGGTIKVFKPNPELQMFEYCSLGLYVLAICVFLTNVKTGIDCSV 360
           PLPVIVTLCVVAGIGLVGGTIKVFKPNPELQMFEYCSLGLYVLAICVFLTNVKTGIDCSV
Sbjct: 61  PLPVIVTLCVVAGIGLVGGTIKVFKPNPELQMFEYCSLGLYVLAICVFLTNVKTGIDCSV 120

Query: 361 SHNWGEVTENQGLAVIASSNIILLVMFAGVIILQIGLWYSNWDLQKRLKEFYAQEEREAA 540
           SHNW E   NQGLAVIASSNIILLVMFAGVIILQIGLWYSNWDLQKRLKEFYAQEEREAA
Sbjct: 121 SHNW-EKLRNQGLAVIASSNIILLVMFAGVIILQIGLWYSNWDLQKRLKEFYAQEEREAA 179

Query: 541 NAGKKTEKVDNAKKNDNKSKGAQKRKNAKK 630
           NAGKKTEKVDNAKKNDNKSKGAQKRKNAKK
Sbjct: 180 NAGKKTEKVDNAKKNDNKSKGAQKRKNAKK 209


>gi|28919853|gb|EAA29251.1| hypothetical protein [Neurospora crassa]
          Length = 231

 Score = 92.4 bits (228), Expect = 4e-18
 Identities = 57/199 (28%), Positives = 104/199 (52%), Gaps = 19/199 (9%)
 Frame = +1

Query: 25  SIGTAMILSATTFLMGVFFSNMPYDYHLLFNPNSTQE-HFDLALRHYQILHETPLPVIVT 201
           S  T +I+    F +G+ F+  PYD+ LL+     Q  ++D    H + LH +PL +   
Sbjct: 23  SFSTFIIIGPVCFFLGILFAQFPYDFPLLWTSEPVQATYYDFLETHVKFLHASPLIISRI 82

Query: 202 LCVVAGIGLVGGTIKVFKPNPELQMFEYCSLGLYVLAICVFLTNVKTGIDCSVSHNW--- 372
           L +V  +GL+G  +K+F+P     +F+  SL LYV+ + V+ +N+  G+    +  W   
Sbjct: 83  LNIVIFVGLLGFFMKLFRPAESNVLFDGASLILYVIGVGVYTSNIVKGMRTITAGIWDME 142

Query: 373 ------------GEVT--ENQGLAVIASSNIILLVMFAGVIILQIGLWYSNWDLQKRLKE 510
                       GEV       + V+++SN IL ++  GV++LQ G WY+    + + K+
Sbjct: 143 DFAGIKHDGPVSGEVILGREDTMKVLSASNTILAMVLVGVLVLQAGQWYA----ESKEKD 198

Query: 511 FYAQ-EEREAANAGKKTEK 564
            YA+ +++E  N G++ ++
Sbjct: 199 DYAKGDKKEKKNDGQQQQQ 217


>gi|19112262|ref|NP_595470.1| hypothetical protein [Schizosaccharomyces pombe]
 gi|15214297|sp|Q9Y876|SHR3_SCHPO Secretory component protein psh3
 gi|7491677|pir||T40447 amino acid uptake protein Psh3p SPBC409.18c [imported] - fission
           yeast (Schizosaccharomyces pombe)
 gi|5533007|gb|AAD44978.1|AF160498_1 Psh3p [Schizosaccharomyces pombe]
 gi|5731927|emb|CAB52622.1| hypothetical protein [Schizosaccharomyces pombe]
          Length = 215

 Score = 69.7 bits (169), Expect = 3e-11
 Identities = 47/195 (24%), Positives = 98/195 (50%), Gaps = 3/195 (1%)
 Frame = +1

Query: 43  ILSATTFLMGVFFSNMPYDYHLLFNPNSTQEHFDLALRHYQILHETPLPVIVTLCVVAGI 222
           +L +T+F+  + F +   D + L++P   +  FD A  +Y ++  +   V  T+  + G+
Sbjct: 23  VLMSTSFIFALLFHSSVADVNTLWSPGP-ESAFDAAETYYTLVAGSHFIVKYTVYTIMGL 81

Query: 223 GLVGGTIKVFKPNPELQMFEYCSLGLYVLAICVFLTNVKTGIDCSVSHNWGEVTENQGLA 402
            ++   I+      + ++F Y S  LY+ A+ +F+ NV   +      N+ +   N  L+
Sbjct: 82  NMIFHLIQATGAKGDDKLFFYSSTLLYLTALILFIVNVAPSMLVVKLQNYVQFPRNMHLS 141

Query: 403 VIASSNIILLVMFAGVIILQIGLWYSNWDLQKRLKEFYAQEERE---AANAGKKTEKVDN 573
           V+A+S++++  + AGVI++Q+G +   + +Q   +  YA++ RE   A  A  ++E    
Sbjct: 142 VLAASHVLVEFLLAGVILIQLG-YVFGYHVQSIQQREYAEDMREQELAEKAKLESESATT 200

Query: 574 AKKNDNKSKGAQKRK 618
                  ++   KRK
Sbjct: 201 QSVETVSTESVSKRK 215


>gi|23508880|ref|NP_701548.1| hypothetical protein [Plasmodium falciparum 3D7]
 gi|23496716|gb|AAN36272.1|AE014846_71 hypothetical protein [Plasmodium falciparum 3D7]
          Length = 717

 Score = 34.3 bits (77), Expect = 1.4
 Identities = 25/84 (29%), Positives = 38/84 (45%)
 Frame = +1

Query: 376 EVTENQGLAVIASSNIILLVMFAGVIILQIGLWYSNWDLQKRLKEFYAQEEREAANAGKK 555
           ++   Q    I S NII    F  + +L +G    N  L   L E   +E+ +    GKK
Sbjct: 267 DIYHKQNNKYINSENIIFFQRFFPLFLL-VGYANGNIILFLILYEKENKEKEQNEKNGKK 325

Query: 556 TEKVDNAKKNDNKSKGAQKRKNAK 627
            EK + ++KN+   K  +  KN K
Sbjct: 326 NEKNEISEKNEKNEKNEKNEKNEK 349


>gi|27672806|ref|XP_236797.1| similar to EGF-like module containing, mucin-like, hormone
            receptor-like sequence 1 [Mus musculus] [Rattus
            norvegicus]
          Length = 1070

 Score = 34.3 bits (77), Expect = 1.4
 Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
 Frame = -2

Query: 365  WLTEQSIPVFTLVRNTQIANTYNP-NEQYSNICSSGFGLKTLIVPPTKPIPATTHKVTIT 189
            W+  +++ +F +VRN ++ N ++  N +  ++C+ G+GL  ++V     I AT H     
Sbjct: 856  WMLVEAVMLFLMVRNLKVVNYFSSRNIKMLHLCAFGYGLPVVVV----IISATVHP---W 908

Query: 188  GNGVSCKIW 162
            G G+  + W
Sbjct: 909  GYGMHNRCW 917


>gi|23478605|gb|EAA15647.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 266

 Score = 34.3 bits (77), Expect = 1.4
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 520 QEEREAANAGKKTEKVDNAKKNDNKSKGAQKRKNAK 627
           + E E+ N  K   K +NA KN+N++K A K  N K
Sbjct: 221 KSESESENENKDANKKENANKNENENKNANKNANFK 256


>gi|23612445|ref|NP_704006.1| hypothetical protein [Plasmodium falciparum 3D7]
 gi|23498744|emb|CAD50814.1| hypothetical protein [Plasmodium falciparum 3D7]
          Length = 1859

 Score = 33.9 bits (76), Expect = 1.8
 Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 7/139 (5%)
 Frame = +1

Query: 190 VIVTLCVVAGIGLVGGTIKVFKPNPELQMFEYCSLGLYVLAICVFLTNVKTGIDCSVSHN 369
           V + LCVV+  GL+  TIK              SL LY+L + + LT++       +   
Sbjct: 64  VFLILCVVSFYGLIVNTIK--------------SLVLYILILSLVLTSISLSFYNIIYIE 109

Query: 370 W-GEVTENQGLAVIASSNIILLVMFAGVIILQIGLWYSNWD-LQKRLKEF-----YAQEE 528
           +  +V E+  L+ +  S   LLVM   V I    L       ++K+LKE         EE
Sbjct: 110 YISKVFEHAFLSTVLYSTFPLLVMELFVSIAYTCLKKKKKGYIEKQLKELKIAIDNTNEE 169

Query: 529 REAANAGKKTEKVDNAKKN 585
           ++  N GK      + +KN
Sbjct: 170 KDKKNEGKLLSLQIDLEKN 188


>gi|23612252|ref|NP_703832.1| hypothetical protein [Plasmodium falciparum 3D7]
 gi|23498493|emb|CAD50444.1| hypothetical protein [Plasmodium falciparum 3D7]
          Length = 446

 Score = 33.9 bits (76), Expect = 1.8
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +1

Query: 490 LQKRLKEFYAQEEREAANAGKKT--EKVDNAKKNDNKSKGAQKRKNAK 627
           L+K  +EF  +E ++  NA KK   E   N  K+DNK+K     K AK
Sbjct: 303 LKKLQEEFKLEESKKQQNAAKKINGEVETNENKDDNKTKNENNNKKAK 350


>gi|23612622|ref|NP_704183.1| exonuclease i, putative [Plasmodium falciparum 3D7]
 gi|23498921|emb|CAD50999.1| exonuclease i, putative [Plasmodium falciparum 3D7]
          Length = 1347

 Score = 33.9 bits (76), Expect = 1.8
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +1

Query: 514 YAQEEREAANAGKKTEKVDNAKKNDNKSKGAQKRKNAKK 630
           Y Q   E  N  KKT+ + N+  N+NK K  +K KN KK
Sbjct: 261 YVQNNNEFINISKKTKSIVNS-NNNNKKKKKKKNKNKKK 298


>gi|20900604|ref|XP_128711.1| EGF-like module containing, mucin-like, hormone receptor-like
           sequence 1 [Mus musculus]
 gi|2495073|sp|Q61549|EMR1_MOUSE Cell surface glycoprotein EMR1 precursor (EMR1 hormone receptor)
           (Cell surface glycoprotein F4/80)
 gi|1223769|emb|CAA63720.1| cell surface glycoprotein [Mus musculus]
 gi|2078504|gb|AAC53184.1| Emr1 [Mus musculus]
          Length = 931

 Score = 33.9 bits (76), Expect = 1.8
 Identities = 13/44 (29%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
 Frame = -2

Query: 365 WLTEQSIPVFTLVRNTQIANTYNP-NEQYSNICSSGFGLKTLIV 237
           W+  +++ +F +VRN ++ N ++  N +  ++C+ G+GL  L+V
Sbjct: 727 WMLVEAVMLFLMVRNLKVVNYFSSRNIKMLHLCAFGYGLPVLVV 770


>gi|4503565|ref|NP_001965.1| egf-like module containing, mucin-like, hormone receptor-like
           sequence 1; egf-like module containing, mucin-like,
           hormone receptor-like [Homo sapiens]
 gi|2495072|sp|Q14246|EMR1_HUMAN Cell surface glycoprotein EMR1 precursor (EMR1 hormone receptor)
 gi|1362898|pir||A57172 probable hormone receptor EMR1 precursor - human
 gi|784994|emb|CAA57232.1| EMR1 [Homo sapiens]
          Length = 886

 Score = 33.9 bits (76), Expect = 1.8
 Identities = 14/44 (31%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
 Frame = -2

Query: 365 WLTEQSIPVFTLVRNTQIANTYNP-NEQYSNICSSGFGLKTLIV 237
           W+  +++ +F +VRN ++ N ++  N +  +IC+ G+GL  L+V
Sbjct: 682 WMLVEAVILFLMVRNLKVVNYFSSRNIKMLHICAFGYGLPMLVV 725


>gi|21929097|dbj|BAC06133.1| seven transmembrane helix receptor [Homo sapiens]
          Length = 929

 Score = 33.9 bits (76), Expect = 1.8
 Identities = 14/44 (31%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
 Frame = -2

Query: 365 WLTEQSIPVFTLVRNTQIANTYNP-NEQYSNICSSGFGLKTLIV 237
           W+  +++ +F +VRN ++ N ++  N +  +IC+ G+GL  L+V
Sbjct: 702 WMLVEAVILFLMVRNLKVVNYFSSRNIKMLHICAFGYGLPMLVV 745


>gi|23490080|gb|EAA21939.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 85

 Score = 33.1 bits (74), Expect = 3.1
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 490 LQKRLKEFYA-QEEREAANAGKKTEKVDNAKKNDNKSKGAQKRKNAKK 630
           +Q  L+ F+  Q++++     KK  K    KKN  K K   K+KN KK
Sbjct: 1   MQTNLESFFCIQKKKKKKKKNKKKNKKKKKKKNKKKKKKKNKKKNKKK 48


>gi|27467103|ref|NP_763740.1| glycerol ester hydrolase [Staphylococcus epidermidis ATCC 12228]
 gi|27314645|gb|AAO03782.1|AE016744_185 glycerol ester hydrolase [Staphylococcus epidermidis ATCC 12228]
          Length = 643

 Score = 32.7 bits (73), Expect = 4.0
 Identities = 22/93 (23%), Positives = 37/93 (39%)
 Frame = +1

Query: 334 VKTGIDCSVSHNWGEVTENQGLAVIASSNIILLVMFAGVIILQIGLWYSNWDLQKRLKEF 513
           V T       HN     +  G        I  +    G   L + L +S W  +++  E 
Sbjct: 412 VSTITTLGTPHNGTPAADKLGSTKFIKDTINRIGKIGGTKALDLELGFSQWGFKQKPNES 471

Query: 514 YAQEEREAANAGKKTEKVDNAKKNDNKSKGAQK 612
           YA+  +  AN+  K  + ++   ND  + GA+K
Sbjct: 472 YAEYAKRIANS--KVWETEDQAVNDLTTAGAEK 502


>gi|22970875|gb|ZP_00017894.1| hypothetical protein [Chloroflexus aurantiacus]
          Length = 284

 Score = 32.7 bits (73), Expect = 4.0
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +1

Query: 394 GLAVIASSNIILLVMFAGVIILQIGLWYSNW--DLQKRLKEFYAQEEREAANAGKK 555
           G+A+ A ++ I + MF G  +   G W      DL +R KE +A+  +  A+  KK
Sbjct: 123 GIAIAAGASFIRVCMFTGAGVWDAGSWDEGCAADLMRRRKELHAESIKIFADVDKK 178


>gi|23135075|ref|ZP_00116834.1| hypothetical protein [Cytophaga hutchinsonii]
          Length = 151

 Score = 32.3 bits (72), Expect = 5.3
 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
 Frame = +1

Query: 334 VKTGIDCSVS------HNWGEVTENQGLAVIASSNIILLVMFAGVIILQIGLWYSNWDLQ 495
           +KTGI C VS      ++W      +   V  +S++IL+     +I+L +GL +  + L 
Sbjct: 15  MKTGILCMVSFLCTLQNSWASSIAPETPVVENTSSVILIFALCTLIVLLLGLLFFLYYLN 74

Query: 496 KRLKEFYAQEERE 534
             L+  +A + +E
Sbjct: 75  TALRVMFAADNKE 87


>gi|18395937|ref|NP_566151.1| expressed protein; protein id: At3g01770.1, supported by cDNA:
           gi_16323116, supported by cDNA: gi_20466525 [Arabidopsis
           thaliana]
 gi|16323117|gb|AAL15293.1| AT3g01770/F28J7_10 [Arabidopsis thaliana]
 gi|20466526|gb|AAM20580.1| unknown protein [Arabidopsis thaliana]
 gi|22136456|gb|AAM91306.1| unknown protein [Arabidopsis thaliana]
          Length = 620

 Score = 32.3 bits (72), Expect = 5.3
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -2

Query: 347 IPVFTLVRNTQIANTYNPNEQYSNICSSGFGLKTLIVPPTKPIPATT 207
           +P+  +V +T  +N   P     + CS+G G + L    TKP P TT
Sbjct: 78  LPISKIVTSTPASNVSRPKSFGMSRCSTGPGKRVLPFTATKPEPVTT 124


>gi|3789932|gb|AAC67547.1| lipase precursor [Staphylococcus epidermidis]
          Length = 643

 Score = 32.3 bits (72), Expect = 5.3
 Identities = 22/93 (23%), Positives = 37/93 (39%)
 Frame = +1

Query: 334 VKTGIDCSVSHNWGEVTENQGLAVIASSNIILLVMFAGVIILQIGLWYSNWDLQKRLKEF 513
           V T       HN     +  G        I  +    G   L + L +S W  +++  E 
Sbjct: 412 VSTITTLGTPHNGTPAADKLGSTKFIKDTINRIGKIGGTKALDLELGFSQWGFKQQPNES 471

Query: 514 YAQEEREAANAGKKTEKVDNAKKNDNKSKGAQK 612
           YA+  +  AN+  K  + ++   ND  + GA+K
Sbjct: 472 YAEYAKRIANS--KVWETEDQAVNDLTTAGAEK 502


>gi|6016737|gb|AAF01563.1|AC009325_33 hypothetical protein [Arabidopsis thaliana]
 gi|6091741|gb|AAF03453.1|AC010797_29 hypothetical protein [Arabidopsis thaliana]
          Length = 601

 Score = 32.3 bits (72), Expect = 5.3
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -2

Query: 347 IPVFTLVRNTQIANTYNPNEQYSNICSSGFGLKTLIVPPTKPIPATT 207
           +P+  +V +T  +N   P     + CS+G G + L    TKP P TT
Sbjct: 78  LPISKIVTSTPASNVSRPKSFGMSRCSTGPGKRVLPFTATKPEPVTT 124


>gi|21290769|gb|EAA02914.1| agCP5180 [Anopheles gambiae str. PEST]
          Length = 371

 Score = 32.3 bits (72), Expect = 5.3
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 19/90 (21%)
 Frame = +1

Query: 94  YDYHLLFNPNSTQEHFDLALRHYQILHETPLPVIVTLCV--------------VAGIGLV 231
           YDY + + P S+  H D   R  Q+     L +   L +              +   G+ 
Sbjct: 91  YDYTMHYRPGSSMPHVDALSRLEQVAGIDDLDIDFQLRIAQARDVEIKSLKTEIESKGVS 150

Query: 232 GGTIK---VFKPNP--ELQMFEYCSLGLYV 306
           G TI+   VFK +P  +L+MF +C + +Y+
Sbjct: 151 GFTIRYGVVFKQSPTSQLKMFPHCKVNIYL 180


>gi|23490925|gb|EAA22582.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 316

 Score = 32.0 bits (71), Expect = 6.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 526 EREAANAGKKTEKVDNAKKNDNKSKGAQKRKNAKK 630
           E +  N  KK +K+   KK   K K ++K+KN+KK
Sbjct: 258 EDKKGNVKKKKKKIKKKKKIQKKKKNSKKKKNSKK 292


>gi|15239928|ref|NP_196229.1| cell division related protein-like; protein id: At5g06110.1
           [Arabidopsis thaliana]
 gi|8978347|dbj|BAA98200.1| cell division related protein-like [Arabidopsis thaliana]
          Length = 663

 Score = 32.0 bits (71), Expect = 6.9
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +1

Query: 460 QIGLWYSNWDLQKRLKEFYAQEEREAANAGKKTEKVDNAKKNDNKSKGAQKRKNAK 627
           ++  +YS W   K  +EF  +EE +   A  + EK    ++N  K++ A+K + A+
Sbjct: 228 EVDRFYSTWYTFKSWREFPEEEEHDIEQAESREEKRWMERENARKTQKARKEEYAR 283


>gi|23508138|ref|NP_700808.1| hypothetical protein [Plasmodium falciparum 3D7]
 gi|23495202|gb|AAN35532.1|AE014834_29 hypothetical protein [Plasmodium falciparum 3D7]
          Length = 1473

 Score = 32.0 bits (71), Expect = 6.9
 Identities = 13/48 (27%), Positives = 29/48 (60%)
 Frame = +1

Query: 487  DLQKRLKEFYAQEEREAANAGKKTEKVDNAKKNDNKSKGAQKRKNAKK 630
            D  +  KE   ++E+E  N  +K ++ +N K+N+N+ +   +++N K+
Sbjct: 1026 DKDENKKEKEKEKEKENENENEKEKENENEKENENEKENENEKENEKE 1073


>gi|19113643|ref|NP_596851.1| putative gmp synthase [glutamine-hydrolyzing] (ec 6.3.5.2)
           (glutamineamidotransferase) (gmp synthetase)
           [Schizosaccharomyces pombe]
 gi|12056488|emb|CAC21407.1| putative GMP synthase [glutamine-hydrolyzing]; no apparent S.
           cerevisiae ortholog [Schizosaccharomyces pombe]
          Length = 237

 Score = 32.0 bits (71), Expect = 6.9
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -2

Query: 356 EQSIPVFTLVRNTQIANTYNPNEQYSNICSSGFGLKTLIVPPTKPIPATTHKV 198
           ++ IP+  + R  Q+ N Y     Y N+ S GF     I  P+KP     HKV
Sbjct: 75  KKKIPILGICRGCQVLNVYFGGSLYQNVSSCGF---RDIHRPSKPRHYLAHKV 124


>gi|23508060|ref|NP_700730.1| hypothetical protein [Plasmodium falciparum 3D7]
 gi|23495123|gb|AAN35454.1|AE014833_25 hypothetical protein [Plasmodium falciparum 3D7]
          Length = 420

 Score = 31.6 bits (70), Expect = 9.0
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = +1

Query: 424 ILLVMFAGVIILQIGLWYSNWDLQKRLKEFYAQEEREAANAGKKTEKVDNAKKNDNKSKG 603
           I + ++  + ILQI  + S  D+     EF+ + E       K  ++  N K ND K K 
Sbjct: 89  IYVYVYIFIYILQINKYTSWADIVDEYDEFFYEVE-------KLKDQEKNEKNNDEKKKK 141

Query: 604 AQKRKNAK 627
            +K+KN +
Sbjct: 142 KKKKKNVQ 149


>gi|6323014|ref|NP_013086.1| bile pigment transporter; Bpt1p [Saccharomyces cerevisiae]
 gi|2506123|sp|P14772|BPT1_YEAST Bile pigment transporter 1
 gi|2132647|pir||S64757 probable membrane protein YLL015w - yeast (Saccharomyces cerevisiae)
 gi|1297015|emb|CAA66162.1| ABC transporter [Saccharomyces cerevisiae]
 gi|1360185|emb|CAA97460.1| ORF YLL015w [Saccharomyces cerevisiae]
 gi|1495208|emb|CAA62776.1| L1313 protein [Saccharomyces cerevisiae]
          Length = 1559

 Score = 31.6 bits (70), Expect = 9.0
 Identities = 41/168 (24%), Positives = 64/168 (38%), Gaps = 2/168 (1%)
 Frame = +1

Query: 103  HLLFNPNSTQEHFDLALRHYQILHETPL--PVIVTLCVVAGIGLVGGTIKVFKPNPELQM 276
            ++LF     Q+++DL ++  Q+L +  +      TL    GI L GG     K    L  
Sbjct: 727  NILFGHKFDQDYYDLTIKACQLLPDLKILPDGDETLVGEKGISLSGGQ----KARLSLAR 782

Query: 277  FEYCSLGLYVLAICVFLTNVKTGIDCSVSHNWGEVTENQGLAVIASSNIILLVMFAGVII 456
              Y    +Y+      L ++ + +D  VS N  E       A++ +  IIL      ++ 
Sbjct: 783  AVYSRADIYL------LDDILSAVDAEVSKNIIEYVLIGKTALLKNKTIILTTNTVSIL- 835

Query: 457  LQIGLWYSNWDLQKRLKEFYAQEEREAANAGKKTEKVDNAKKNDNKSK 600
                         K  +  YA E  E    G   E V N K N +K K
Sbjct: 836  -------------KHSQMIYALENGEIVEQG-NYEDVMNRKNNTSKLK 869


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 25, 2003  1:00 AM
  Number of letters in database: 442,405,847
  Number of sequences in database:  1,376,942
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 474,049,711
Number of Sequences: 1376942
Number of extensions: 9745162
Number of successful extensions: 28672
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 27336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28558
length of database: 442,405,847
effective HSP length: 118
effective length of database: 279,926,691
effective search space used: 25753255572
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)