MedBlast(0.8) Results

Direct References:

Hit Evalue SeqType References
Z74195 0.0 N  
X97751 0.0 N
NP_010134 0.0 P  
Q12250 0.0 P  
S67695 0.0 P  
CAA66344 0.0 P  
CAA98721 0.0 P  
EAA36187 1e-107 P  
NP_593278 2e-99 P  
NP_594776 2e-99 P  
Q9UTM3 2e-99 P  
T37666 2e-99 P  
CAB57322 2e-99 P  
CAC37421 2e-99 P  
AAH42325 2e-98 P  
BAB30969 2e-97 P  
NP_080170 4e-97 P  
BAB25184 4e-97 P  
BAB26619 4e-97 P  
AAH04694 4e-97 P  
NP_002807 5e-97 P  
O00232 5e-97 P  
JC6523 5e-97 P  
BAA19749 5e-97 P  
AAH19062 5e-97 P  
AAH45091 1e-95 P  
Q9D8W5 4e-95 P  
BAB25140 4e-95 P  
NP_777360 5e-92 P  
AAO20069 6e-79 P  
EAA11824 4e-78 P  
NP_196552 7e-76 P  
BAB09411 7e-76 P  
AAK59415 7e-76 P  
AAM44954 7e-76 P  
BAB10309 9e-76 P  
NP_568994 9e-76 P  
AAL32985 9e-76 P  
AAL32972 9e-76 P  
AAM70581 9e-76 P  
NP_494835 2e-73 P  
F88130 2e-73 P  
AAA81126 2e-73 P  
NP_649588 2e-65 P  
AAF08383 2e-65 P  
AAF51952 2e-65 P  
AAL13568 2e-65 P  
NP_700648 3e-62 P  
AAN35372 3e-62 P  
EAA22115 6e-61 P  
XP_213502 1e-42 P  
CAB98159 5e-39 P  
BAB27853 7e-39 P  
BAB78500 2e-36 P  
AAL72636 2e-34 P  
NP_597451 2e-28 P  
CAD26628 2e-28 P  

References Summary:

  1. Delaveau T, Blugeon C, Jacq C, Perea J
    Analysis of a 23 kb region on the left arm of yeast chromosome IV.
    Yeast 1996 Dec;12(15):1587-92
    PMID: 8972581

 

Indirect References:

Hit Evalue SeqType References
Z74195 0.0 N
X97751 0.0 N  
NP_010134 0.0 P
  • nas5 (...)
  • nas5p (-)
  • rpn5p (-)
  • rpn5 (...)
Q12250 0.0 P  
S67695 0.0 P  
CAA66344 0.0 P  
CAA98721 0.0 P
  • nas5 (...)
  • nas5p (-)
  • rpn5p (-)
  • rpn5 (...)
EAA36187 1e-107 P  
NP_593278 2e-99 P  
NP_594776 2e-99 P
  • rpn5-b (-)
Q9UTM3 2e-99 P  
T37666 2e-99 P  
CAB57322 2e-99 P  
CAC37421 2e-99 P  
AAH42325 2e-98 P  
BAB30969 2e-97 P  
NP_080170 4e-97 P
  • psmd12 (-)
BAB25184 4e-97 P  
BAB26619 4e-97 P  
AAH04694 4e-97 P  
NP_002807 5e-97 P
O00232 5e-97 P  
JC6523 5e-97 P  
BAA19749 5e-97 P  
AAH19062 5e-97 P  
AAH45091 1e-95 P  
Q9D8W5 4e-95 P  
BAB25140 4e-95 P  
NP_777360 5e-92 P
  • psmd12 (-)
  • p55 (...)
AAO20069 6e-79 P  
EAA11824 4e-78 P
  • agcg56366 (-)
NP_196552 7e-76 P
  • at5g09900 (-)
BAB09411 7e-76 P  
AAK59415 7e-76 P
  • at5g09900 (-)
AAM44954 7e-76 P
  • at5g09900 (-)
BAB10309 9e-76 P  
NP_568994 9e-76 P
  • at5g64760 (-)
AAL32985 9e-76 P  
AAL32972 9e-76 P  
AAM70581 9e-76 P  
NP_494835 2e-73 P
  • rpn-5 (-)
F88130 2e-73 P  
AAA81126 2e-73 P
  • rpn-5 (-)
NP_649588 2e-65 P
  • rpn5 (...)
AAF08383 2e-65 P  
AAF51952 2e-65 P
  • rpn5 (...)
AAL13568 2e-65 P
  • rpn5 (...)
NP_700648 3e-62 P
  • pf10_0174 (-)
AAN35372 3e-62 P
  • pf10_0174 (-)
EAA22115 6e-61 P
  • py02643 (-)
XP_213502 1e-42 P
  • loc287772 (-)
CAB98159 5e-39 P  
BAB27853 7e-39 P  
BAB78500 2e-36 P
AAL72636 2e-34 P
  • rpn5 (...)
NP_597451 2e-28 P
  • ecu05_1080 (-)
CAD26628 2e-28 P
  • ecu05_1080 (-)

References Summary:

  1. Saito A, Watanabe TK, Shimada Y, Fujiwara T, Slaughter CA, DeMartino GN, Tanahashi N, Tanaka K
    cDNA cloning and functional analysis of p44.5 and p55, two regulatory subunits of the 26S proteasome.
    Gene 1997 Dec 12;203(2):241-50
    PMID: 9426256
  2. Glickman MH, Rubin DM, Fried VA, Finley D
    The regulatory particle of the Saccharomyces cerevisiae proteasome.
    Mol Cell Biol 1998 Jun;18(6):3149-62
    PMID: 9584156
  3. Fu H, Reis N, Lee Y, Glickman MH, Vierstra RD
    Subunit interaction maps for the regulatory particle of the 26S proteasome and the COP9 signalosome.
    EMBO J 2001 Dec 17;20(24):7096-107
    PMID: 11742986
  4. Kimura Y, Saeki Y, Yokosawa H, Polevoda B, Sherman F, Hirano H
    N-Terminal modifications of the 19S regulatory particle subunits of the yeast proteasome.
    Arch Biochem Biophys 2003 Jan 15;409(2):341-8
    PMID: 12504901
  5. Kapranov AB, Kuriatova MV, Preobrazhenskaia OV, Tiutiaeva VV, Shtuka R, Feldmann H, Karpov VL
    [Isolation and identification of PACE-binding protein rpn4--a new transcription activator, participating in regulation of 26S proteosome and other genes]
    Mol Biol (Mosk) 2001 May-Jun;35(3):420-31
    PMID: 11443924
  6. Teuber G, Rossol S, Lee JH, Dietrich CF, Zeuzem S
    TH1/TH2 serum cytokine profiles and soluble TNF-receptor response in patients with chronic hepatitis C during recombinant human interleukin-12 (rHuIL-12) treatment.
    Z Gastroenterol 2002 Jul;40(7):487-95
    PMID: 12122596
  7. Diakowski W, Sikorski A
    Brain spectrin exerts much stronger effect on anionic phospholipid monolayers than erythroid spectrin.
    Biochim Biophys Acta 2002 Aug 31;1564(2):403-11
    PMID: 12175923
  8. Fraunberger P, Hahn J, Holler E, Walli AK, Seidel D
    Serum cholesterol levels in neutropenic patients with fever.
    Clin Chem Lab Med 2002 Mar;40(3):304-7
    PMID: 12005222
  9. Gao IK, Scholz P, Boehme MW, Norden C, Lemmel EM
    A 7-day oral treatment of patients with active rheumatoid arthritis using the prostacyclin analog iloprost: cytokine modulation, safety, and clinical effects.
    Rheumatol Int 2002 Jun;22(2):45-51
    PMID: 12070674
  10. Diez JJ, Hernanz A, Medina S, Bayon C, Iglesias P
    Serum concentrations of tumour necrosis factor-alpha (TNF-alpha) and soluble TNF-alpha receptor p55 in patients with hypothyroidism and hyperthyroidism before and after normalization of thyroid function.
    Clin Endocrinol (Oxf) 2002 Oct;57(4):515-21
    PMID: 12354134
  11. Koito A, Shigekane H, Matsushita S
    Ability of small animal cells to support the postintegration phase of human immunodeficiency virus type-1 replication.
    Virology 2003 Jan 5;305(1):181-91
    PMID: 12504551
  12. Gorgun G, Foss F
    Immunomodulatory effects of RXR rexinoids: modulation of high-affinity IL-2R expression enhances susceptibility to denileukin diftitox.
    Blood 2002 Aug 15;100(4):1399-403
    PMID: 12149223
  13. Sparacio S, Pfeiffer T, Holtkotte D, Bosch V
    Inter-retroviral fusion mediated by human immunodeficiency virus or murine leukemia virus glycoproteins: independence of cellular membranes and membrane vesicles.
    Virology 2002 Mar 15;294(2):305-11
    PMID: 12009872
  14. Liang C, Hu J, Russell RS, Wainberg MA
    Translation of Pr55(gag) augments packaging of human immunodeficiency virus type 1 RNA in a cis-acting manner.
    AIDS Res Hum Retroviruses 2002 Oct 10;18(15):1117-26
    PMID: 12396450
  15. Storey H, Stewart A, Vandenabeele P, Luzio JP
    The p55 tumour necrosis factor receptor TNFR1 contains a trans-Golgi network localization signal in the C-terminal region of its cytoplasmic tail.
    Biochem J 2002 Aug 15;366(Pt 1):15-22
    PMID: 11985495
  16. Huang W, Gamarnik A, Limoli K, Petropoulos CJ, Whitcomb JM
    Amino acid substitutions at position 190 of human immunodeficiency virus type 1 reverse transcriptase increase susceptibility to delavirdine and impair virus replication.
    J Virol 2003 Jan;77(2):1512-23
    PMID: 12502865
  17. Rumalla VK, Calvano SE, Spotnitz AJ, Krause TJ, Hilkert RJ, Lin E, Lowry SF
    Alterations in immunocyte tumor necrosis factor receptor and apoptosis in patients with congestive heart failure.
    Ann Surg 2002 Aug;236(2):254-60
    PMID: 12170032
  18. Sandborn WJ, Targan SR
    Biologic therapy of inflammatory bowel disease.
    Gastroenterology 2002 May;122(6):1592-608
    PMID: 12016425
  19. Panthel K, Faller G, Haas R
    Colonization of C57BL/6J and BALB/c wild-type and knockout mice with Helicobacter pylori: effect of vaccination and implications for innate and acquired immunity.
    Infect Immun 2003 Feb;71(2):794-800
    PMID: 12540559
  20. Zhai R, Liu G, Ge X, Bao W, Wu C, Yang C, Liang D
    Serum levels of tumor necrosis factor-alpha (TNF-alpha), interleukin 6 (IL-6), and their soluble receptors in coal workers' pneumoconiosis.
    Respir Med 2002 Oct;96(10):829-34
    PMID: 12412984
  21. Kacprzyk F
    [Serum levels and urinary excretion of soluble receptors for tumor necrosis factor (sTNF R) in patients with primary glomerulonephritis]
    Pol Arch Med Wewn 2002 Mar;107(3):215-21
    PMID: 12107979
  22. Ameloot P, Takahashi N, Everaerdt B, Hostens J, Eugster HP, Fiers W, Brouckaert P
    Bioavailability of recombinant tumor necrosis factor determines its lethality in mice.
    Eur J Immunol 2002 Oct;32(10):2759-65
    PMID: 12355427
  23. Graziewicz MA, Day BJ, Copeland WC
    The mitochondrial DNA polymerase as a target of oxidative damage.
    Nucleic Acids Res 2002 Jul 1;30(13):2817-24
    PMID: 12087165
  24. Hensley K, Floyd RA, Gordon B, Mou S, Pye QN, Stewart C, West M, Williamson K
    Temporal patterns of cytokine and apoptosis-related gene expression in spinal cords of the G93A-SOD1 mouse model of amyotrophic lateral sclerosis.
    J Neurochem 2002 Jul;82(2):365-74
    PMID: 12124437
  25. Cui YH, Le Y, Zhang X, Gong W, Abe K, Sun R, Van Damme J, Proost P, Wang JM
    Up-regulation of FPR2, a chemotactic receptor for amyloid beta 1-42 (A beta 42), in murine microglial cells by TNF alpha.
    Neurobiol Dis 2002 Aug;10(3):366-77
    PMID: 12270697
  26. Dollner H, Vatten L, Halgunset J, Rahimipoor S, Austgulen R
    Histologic chorioamnionitis and umbilical serum levels of pro-inflammatory cytokines and cytokine inhibitors.
    BJOG 2002 May;109(5):534-9
    PMID: 12066943
  27. Yang L, Ratner L
    Interaction of HIV-1 gag and membranes in a cell-free system.
    Virology 2002 Oct 10;302(1):164-73
    PMID: 12429525
  28. [No author listed]
    Abstracts of the American Academy of Otolaryngology--Head and Neck Surgery Foundation, Inc. San Diego, California, USA. September 22-25, 2002.
    Otolaryngol Head Neck Surg 2002 Aug;127(2):P55-297
    PMID: 12201252
  29. Hulthe J, Wikstrand J, Mattsson-Hulten L, Fagerberg B
    Circulating ICAM-1 (intercellular cell-adhesion molecule 1) is associated with early stages of atherosclerosis development and with inflammatory cytokines in healthy 58-year-old men: the Atherosclerosis and Insulin Resistance (AIR) study.
    Clin Sci (Lond) 2002 Aug;103(2):123-9
    PMID: 12149102
  30. Juszczynski P, Kalinka E, Bienvenu J, Woszczek G, Borowiec M, Robak T, Kowalski M, Lech-Maranda E, Baseggio L, Coiffier B, Salles G, Warzocha K
    Human leukocyte antigens class II and tumor necrosis factor genetic polymorphisms are independent predictors of non-Hodgkin lymphoma outcome.
    Blood 2002 Oct 15;100(8):3037-40
    PMID: 12351419
  31. Baril P, Nejjari M, Scoazek JY, Boukerche H
    Blocking a novel 55 kDa melanoma-associated cell surface antigen inhibits the development of spontaneous metastases and interactions with frozen lung section.
    Int J Cancer 2002 May 20;99(3):315-22
    PMID: 11992398
  32. Le Fur Y, Mercurio V, Moio L, Blanquet J, Meunier JM
    A new approach to examine the relationships between sensory and gas chromatography-olfactometry data using Generalized Procrustes analysis applied to six French Chardonnay wines.
    J Agric Food Chem 2003 Jan 15;51(2):443-52
    PMID: 12517108
  33. Ruemmele FM, Beaulieu JF, Dionne S, Levy E, Seidman EG, Cerf-Bensussan N, Lentze MJ
    Lipopolysaccharide modulation of normal enterocyte turnover by toll-like receptors is mediated by endogenously produced tumour necrosis factor alpha.
    Gut 2002 Dec;51(6):842-8
    PMID: 12427787
  34. Schell SR, Wessels FJ, Abouhamze A, Moldawer LL, Copeland EM 3rd
    Pro- and antiinflammatory cytokine production after radiofrequency ablation of unresectable hepatic tumors.
    J Am Coll Surg 2002 Dec;195(6):774-81
    PMID: 12495309
  35. Fernandes JC, Martel-Pelletier J, Pelletier JP
    The role of cytokines in osteoarthritis pathophysiology.
    Biorheology 2002;39(1-2):237-46
    PMID: 12082286
  36. Tcherkasowa AE, Adam-Klages S, Kruse ML, Wiegmann K, Mathieu S, Kolanus W, Kronke M, Adam D
    Interaction with factor associated with neutral sphingomyelinase activation, a WD motif-containing protein, identifies receptor for activated C-kinase 1 as a novel component of the signaling pathways of the p55 TNF receptor.
    J Immunol 2002 Nov 1;169(9):5161-70
    PMID: 12391233
  37. Zhou J, Li C, Yao G, Chiang H, Chang Z
    Gene expression of cytokine receptors in HL60 cells exposed to a 50 Hz magnetic field.
    Bioelectromagnetics 2002 Jul;23(5):339-46
    PMID: 12111754
  38. Bronowska A, Chilmonczyk Z, Les A, Edvardsen O, Ostensen R, Sylte I
    Molecular dynamics of 5-HT1A and 5-HT2A serotonin receptors with methylated buspirone analogues.
    J Comput Aided Mol Des 2001 Nov;15(11):1005-23
    PMID: 11989622
  39. Gao L, Bai L, Nan QZ, Yang XS, Chen K, Wen HP, Lai ZS, Bo L, Zhang YL, Zhang ZS
    Detection of soluble tumor necrosis factor-p55 levels in the serum and ascitic fluid of patients with hepatocellular carcinoma.
    Di Yi Jun Yi Da Xue Xue Bao 2002 Jul;22(7):641-3
    PMID: 12376300
  40. el-Barbary M, Khabar KS
    Soluble tumor necrosis factor receptor p55 predicts cytokinemia and systemic inflammatory response after cardiopulmonary bypass.
    Crit Care Med 2002 Aug;30(8):1712-6
    PMID: 12163781
  41. Iordanov MS, Choi RJ, Ryabinina OP, Dinh TH, Bright RK, Magun BE
    The UV (Ribotoxic) stress response of human keratinocytes involves the unexpected uncoupling of the Ras-extracellular signal-regulated kinase signaling cascade from the activated epidermal growth factor receptor.
    Mol Cell Biol 2002 Aug;22(15):5380-94
    PMID: 12101233
  42. Brennan LE, Sune C, Klimkait T
    A neutravidin-based assay for reverse transcriptase suitable for high throughput screening of retroviral activity.
    J Biochem Mol Biol 2002 May 31;35(3):262-6
    PMID: 12297021
  43. Sabokbar A, Kudo O, Athanasou NA
    Two distinct cellular mechanisms of osteoclast formation and bone resorption in periprosthetic osteolysis.
    J Orthop Res 2003 Jan;21(1):73-80
    PMID: 12507582
  44. Hensler T, Sauerland S, Bouillon B, Raum M, Rixen D, Helling HJ, Andermahr J, Neugebauer EA
    Association between injury pattern of patients with multiple injuries and circulating levels of soluble tumor necrosis factor receptors, interleukin-6 and interleukin-10, and polymorphonuclear neutrophil elastase.
    J Trauma 2002 May;52(5):962-70
    PMID: 11988666
  45. Matsuoka-Aizawa S, Sato H, Hachiya A, Tsuchiya K, Takebe Y, Gatanaga H, Kimura S, Oka S
    Isolation and molecular characterization of a nelfinavir (NFV)-resistant human immunodeficiency virus type 1 that exhibits NFV-dependent enhancement of replication.
    J Virol 2003 Jan;77(1):318-27
    PMID: 12477837
  46. Shibahara T, Kawasaki H, Hirano H
    Identification of the 19S regulatory particle subunits from the rice 26S proteasome.
    Eur J Biochem 2002 Mar;269(5):1474-83
    PMID: 11874462

 

Options:

 






 

BLASTN 2.2.5 [Nov-16-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
RID: 1048252637-012844-19166
Query= ORFN:YDL147W RPN5 SGDID:S0002306, Chr IV from 190925-192262
         (1338 letters)

Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences) 
           1,707,549 sequences; 7,931,913,529 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|1431230|emb|Z74195.1|SCYDL147W S.cerevisiae chromosome IV rea...  1191   0.0  
gi|1325960|emb|X97751.1|SCIV23 S.cerevisiae chrIV genes STE7, CL...  1191   0.0  
gi|27924243|gb|BC045091.1| Xenopus laevis, Similar to proteasome...    46   0.14 
gi|13357539|gb|AC019086.7| Homo sapiens BAC clone RP11-360H4 fro...    46   0.14 
gi|6755992|ref|NM_011714.1| Mus musculus bromodomain adjacent to...    44   0.55 
gi|28396632|emb|AL805957.12| Mouse DNA sequence from clone RP23-...    44   0.55 
gi|12857377|dbj|AK017894.1| Mus musculus adult male thymus cDNA,...    44   0.55 
gi|4165088|gb|AF084480.1|AF084480 Mus musculus Williams-Beuren s...    44   0.55 
gi|15624875|gb|AC024607.3| Mus musculus chromosome 5 clone RP23-...    42   2.2  
gi|21307386|gb|AC021698.12| Homo sapiens chromosome 11, clone RP...    42   2.2  
gi|15668129|gb|AC019186.9| Homo sapiens BAC clone RP11-301K6 fro...    42   2.2  
gi|11181844|gb|AC074115.4| Homo sapiens chromosome 7 clone RP11-...    42   2.2  
gi|18030127|gb|AC010476.7| Homo sapiens chromosome 5 clone CTD-2...    42   2.2  
gi|15887319|gb|AC026694.5| Homo sapiens chromosome 5 clone CTC-2...    42   2.2  
gi|1573838|gb|U32765.1|U32765 Haemophilus influenzae Rd section ...    42   2.2  
gi|20983819|ref|XM_159178.1| Mus musculus LOC245394 (LOC245394),...    40   8.6  
gi|22832622|gb|AE003569.3| Drosophila melanogaster chromosome X ...    40   8.6  
gi|13385383|ref|NM_025894.1| Mus musculus proteasome (prosome, m...    40   8.6  
gi|27819570|gb|AC124817.2| Branchiostoma floridae, clone -10F3, ...    40   8.6  
gi|27695636|gb|BC042999.1| Homo sapiens, Similar to RIKEN cDNA 4...    40   8.6  
gi|27228869|gb|AC093424.3| Homo sapiens chromosome 1 clone RP11-...    40   8.6  
gi|24195269|gb|AE011342.1| Leptospira interrogans serovar lai st...    40   8.6  
gi|13435644|gb|BC004694.1| Mus musculus, RIKEN cDNA 1500002F15 g...    40   8.6  
gi|22507047|gb|AC116360.2| Homo sapiens chromosome 5 clone RP11-...    40   8.6  
gi|22218575|gb|AC068413.11| Homo sapiens chromosome 8, clone RP1...    40   8.6  
gi|21281478|gb|AC104111.2| Homo sapiens chromosome 5 clone RP11-...    40   8.6  
gi|19698740|gb|AC104814.5| Homo sapiens BAC clone RP11-683C4 fro...    40   8.6  
gi|19747180|gb|AC114278.2| Homo sapiens chromosome 5 clone CTD-2...    40   8.6  
gi|18497230|gb|AC093814.3| Homo sapiens BAC clone RP11-362I16 fr...    40   8.6  
gi|17149787|gb|AC097655.2| Homo sapiens BAC clone RP11-284H12 fr...    40   8.6  
gi|15668097|gb|AC092583.2| Homo sapiens BAC clone RP11-19B22 fro...    40   8.6  
gi|18425292|gb|AC103590.2| Homo sapiens chromosome 1 clone RP11-...    40   8.6  
gi|17940006|gb|AF316500.1|AF316500 Leptospira interrogans strain...    40   8.6  
gi|13346888|gb|U61226.2|LIU61226 Leptospira interrogans serovar ...    40   8.6  
gi|17047070|gb|AC012602.4| Homo sapiens chromosome 5 clone CTC-3...    40   8.6  
gi|16874827|gb|AC099308.1| Drosophila melanogaster, chromosome X...    40   8.6  
gi|23504644|emb|AL929353.1|PFA929353 Plasmodium falciparum strai...    40   8.6  
gi|15187237|gb|AC021078.5| Homo sapiens chromosome 5 clone CTB-8...    40   8.6  
gi|14030839|gb|AC021842.7|AC021842 Homo sapiens chromosome 8, cl...    40   8.6  
gi|25136664|emb|AL844609.6| Mouse DNA sequence from clone RP23-3...    40   8.6  
gi|24474485|emb|AL928620.5| Mouse DNA sequence from clone RP23-3...    40   8.6  
gi|16412145|emb|AL591984.1| Listeria monocytogenes strain EGD, c...    40   8.6  
gi|12597739|gb|AC022368.2|AC022368 Mus musculus clone RP23-192D2...    40   8.6  
gi|11095123|gb|AC084677.1|CBRG47L22 Caenorhabditis briggsae cosm...    40   8.6  
gi|11095013|gb|AC084563.1|CBRG36E21 Caenorhabditis briggsae cosm...    40   8.6  
gi|5019262|gb|AC007190.4|AC007190 Genomic sequence for Arabidops...    40   8.6  
gi|7408135|gb|AC010150.3|AC010150 Homo sapiens BAC clone RP11-40...    40   8.6  
gi|28411858|dbj|AP005716.2| Homo sapiens genomic DNA, chromosome...    40   8.6  
gi|12857303|dbj|AK017843.1| Mus musculus 8 days embryo whole bod...    40   8.6  
gi|12848163|dbj|AK011806.1| Mus musculus 10 days embryo whole bo...    40   8.6  
gi|12845095|dbj|AK009969.1| Mus musculus adult male tongue cDNA,...    40   8.6  
gi|14031073|emb|AL136366.24| Human DNA sequence from clone RP11-...    40   8.6  
gi|12841377|dbj|AK007680.1| Mus musculus 10 day old male pancrea...    40   8.6  
gi|12841272|dbj|AK007619.1| Mus musculus 10 day old male pancrea...    40   8.6  
gi|15384629|emb|AL356102.13| Human DNA sequence from clone RP11-...    40   8.6  
gi|15149566|emb|AL359547.26| Human DNA sequence from clone RP11-...    40   8.6  
gi|21911760|emb|AL831762.2| Human DNA sequence from clone RP11-2...    40   8.6  
gi|12584726|emb|AL357315.14| Human DNA sequence from clone RP11-...    40   8.6  
gi|11830788|emb|AL445435.11| Human DNA sequence from clone RP11-...    40   8.6  
gi|7839901|gb|AC008970.4|AC008970 Homo sapiens chromosome 5 clon...    40   8.6  
gi|12842964|dbj|AK008646.1| Mus musculus adult male stomach cDNA...    40   8.6  
gi|12836820|dbj|AK005114.1| Mus musculus adult male cerebellum c...    40   8.6  
gi|5832172|emb|AL116956.1|CNS01DL0 Botrytis cinerea strain T4 cD...    40   8.6  
gi|12697914|dbj|AB051472.1| Homo sapiens mRNA for KIAA1685 prote...    40   8.6  

ALIGNMENTS
>gi|1431230|emb|Z74195.1|SCYDL147W S.cerevisiae chromosome IV reading frame ORF YDL147w
          Length = 2163

 Score = 1191 bits (601), Expect = 0.0
 Identities = 601/601 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtcaagagatgcaccaattaaggctgacaaggattatagccaaattttgaaggaagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 atgtcaagagatgcaccaattaaggctgacaaggattatagccaaattttgaaggaagag 397

                                                                       
Query: 61  tttcctaagatcgattcgctcgctcaaaatgattgtaactctgctttagaccaactgtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tttcctaagatcgattcgctcgctcaaaatgattgtaactctgctttagaccaactgtta 457

                                                                       
Query: 121 gtgttggagaagaaaaccagacaagcttcagatctggcctcctcgaaagaagttttggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gtgttggagaagaaaaccagacaagcttcagatctggcctcctcgaaagaagttttggcc 517

                                                                       
Query: 181 aagattgtagatctgctagcatcaaggaataagtgggacgacctaaatgagcaattgact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 aagattgtagatctgctagcatcaaggaataagtgggacgacctaaatgagcaattgact 577

                                                                       
Query: 241 ctactctcaaaaaagcatggtcagttgaaattgtcaattcagtatatgatacaaaaggtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ctactctcaaaaaagcatggtcagttgaaattgtcaattcagtatatgatacaaaaggtt 637

                                                                       
Query: 301 atggaatatttgaaaagctcgaaatctttggatttaaacaccagaattagtgtcattgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 atggaatatttgaaaagctcgaaatctttggatttaaacaccagaattagtgtcattgaa 697

                                                                       
Query: 361 actatcagggtggttacagagaacaaaatatttgtagaagtggaaagagctagggtcacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 actatcagggtggttacagagaacaaaatatttgtagaagtggaaagagctagggtcacc 757

                                                                       
Query: 421 aaagatttggtggaaattaagaaagaagagggtaagattgatgaagctgcagacatcttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 aaagatttggtggaaattaagaaagaagagggtaagattgatgaagctgcagacatcttg 817

                                                                       
Query: 481 tgtgagttacaggttgagacctatggctccatggaaatgtctgagaaaattcagtttata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 tgtgagttacaggttgagacctatggctccatggaaatgtctgagaaaattcagtttata 877

                                                                       
Query: 541 ttagagcaaatggaattgagtatattaaaaggtgattattcccaagccacggtgctttca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 ttagagcaaatggaattgagtatattaaaaggtgattattcccaagccacggtgctttca 937

            
Query: 601 a 601
           |
Sbjct: 938 a 938



 Score = 1166 bits (588), Expect = 0.0
 Identities = 588/588 (100%)
 Strand = Plus / Plus

                                                                        
Query: 620  cttttaaaaatccaaaatacgagtcattgaagctagaatattataatcttctggtaaaaa 679
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957  cttttaaaaatccaaaatacgagtcattgaagctagaatattataatcttctggtaaaaa 1016

                                                                        
Query: 680  ttagtttgcacaagagagaatacctagaagttgcgcagtatctgcaagaaatttatcaaa 739
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 ttagtttgcacaagagagaatacctagaagttgcgcagtatctgcaagaaatttatcaaa 1076

                                                                        
Query: 740  cagacgccattaaatcagatgaggctaagtggaaacctgttttatcgcacattgtatatt 799
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1077 cagacgccattaaatcagatgaggctaagtggaaacctgttttatcgcacattgtatatt 1136

                                                                        
Query: 800  tcttagtcctttcaccttacggcaatttacaaaatgatttaattcacaaaatccagaatg 859
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1137 tcttagtcctttcaccttacggcaatttacaaaatgatttaattcacaaaatccagaatg 1196

                                                                        
Query: 860  ataacaacctgaaaaaattagaaagccaagaatctttagtaaaattgtttactacgaatg 919
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1197 ataacaacctgaaaaaattagaaagccaagaatctttagtaaaattgtttactacgaatg 1256

                                                                        
Query: 920  agttgatgagatggccaattgttcaaaaaacctatgagcccgtcttaaatgaggatgatt 979
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1257 agttgatgagatggccaattgttcaaaaaacctatgagcccgtcttaaatgaggatgatt 1316

                                                                        
Query: 980  tggcatttggtggagaagctaataagcatcactgggaagatttacaaaaaagggtcatcg 1039
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1317 tggcatttggtggagaagctaataagcatcactgggaagatttacaaaaaagggtcatcg 1376

                                                                        
Query: 1040 agcacaatttaagagtcatttccgaatactattccagaattactttactaagattgaatg 1099
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1377 agcacaatttaagagtcatttccgaatactattccagaattactttactaagattgaatg 1436

                                                                        
Query: 1100 aattgctggacctaacggagagccagacggaaacatacatcagtgatttggtaaaccagg 1159
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1437 aattgctggacctaacggagagccagacggaaacatacatcagtgatttggtaaaccagg 1496

                                                            
Query: 1160 gcatcatatacgctaaagttaatcgcccagccaaaatcgtgaattttg 1207
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1497 gcatcatatacgctaaagttaatcgcccagccaaaatcgtgaattttg 1544



 Score =  234 bits (118), Expect = 3e-58
 Identities = 118/118 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1221 ctcaagccaattattgaacgaatggtcacataatgttgacgaactattagaacatataga 1280
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1558 ctcaagccaattattgaacgaatggtcacataatgttgacgaactattagaacatataga 1617

                                                                      
Query: 1281 aacaataggccatttaattacaaaagaggaaatcatgcacggtttgcaagctaaatga 1338
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1618 aacaataggccatttaattacaaaagaggaaatcatgcacggtttgcaagctaaatga 1675


>gi|1325960|emb|X97751.1|SCIV23 S.cerevisiae chrIV genes STE7, CLB3, MSH5, RPC53, RET1
          Length = 23096

 Score = 1191 bits (601), Expect = 0.0
 Identities = 601/601 (100%)
 Strand = Plus / Plus

                                                                         
Query: 1     atgtcaagagatgcaccaattaaggctgacaaggattatagccaaattttgaaggaagag 60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18236 atgtcaagagatgcaccaattaaggctgacaaggattatagccaaattttgaaggaagag 18295

                                                                         
Query: 61    tttcctaagatcgattcgctcgctcaaaatgattgtaactctgctttagaccaactgtta 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18296 tttcctaagatcgattcgctcgctcaaaatgattgtaactctgctttagaccaactgtta 18355

                                                                         
Query: 121   gtgttggagaagaaaaccagacaagcttcagatctggcctcctcgaaagaagttttggcc 180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18356 gtgttggagaagaaaaccagacaagcttcagatctggcctcctcgaaagaagttttggcc 18415

                                                                         
Query: 181   aagattgtagatctgctagcatcaaggaataagtgggacgacctaaatgagcaattgact 240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18416 aagattgtagatctgctagcatcaaggaataagtgggacgacctaaatgagcaattgact 18475

                                                                         
Query: 241   ctactctcaaaaaagcatggtcagttgaaattgtcaattcagtatatgatacaaaaggtt 300
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18476 ctactctcaaaaaagcatggtcagttgaaattgtcaattcagtatatgatacaaaaggtt 18535

                                                                         
Query: 301   atggaatatttgaaaagctcgaaatctttggatttaaacaccagaattagtgtcattgaa 360
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18536 atggaatatttgaaaagctcgaaatctttggatttaaacaccagaattagtgtcattgaa 18595

                                                                         
Query: 361   actatcagggtggttacagagaacaaaatatttgtagaagtggaaagagctagggtcacc 420
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18596 actatcagggtggttacagagaacaaaatatttgtagaagtggaaagagctagggtcacc 18655

                                                                         
Query: 421   aaagatttggtggaaattaagaaagaagagggtaagattgatgaagctgcagacatcttg 480
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18656 aaagatttggtggaaattaagaaagaagagggtaagattgatgaagctgcagacatcttg 18715

                                                                         
Query: 481   tgtgagttacaggttgagacctatggctccatggaaatgtctgagaaaattcagtttata 540
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18716 tgtgagttacaggttgagacctatggctccatggaaatgtctgagaaaattcagtttata 18775

                                                                         
Query: 541   ttagagcaaatggaattgagtatattaaaaggtgattattcccaagccacggtgctttca 600
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18776 ttagagcaaatggaattgagtatattaaaaggtgattattcccaagccacggtgctttca 18835

              
Query: 601   a 601
             |
Sbjct: 18836 a 18836



 Score = 1166 bits (588), Expect = 0.0
 Identities = 588/588 (100%)
 Strand = Plus / Plus

                                                                         
Query: 620   cttttaaaaatccaaaatacgagtcattgaagctagaatattataatcttctggtaaaaa 679
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18855 cttttaaaaatccaaaatacgagtcattgaagctagaatattataatcttctggtaaaaa 18914

                                                                         
Query: 680   ttagtttgcacaagagagaatacctagaagttgcgcagtatctgcaagaaatttatcaaa 739
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18915 ttagtttgcacaagagagaatacctagaagttgcgcagtatctgcaagaaatttatcaaa 18974

                                                                         
Query: 740   cagacgccattaaatcagatgaggctaagtggaaacctgttttatcgcacattgtatatt 799
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18975 cagacgccattaaatcagatgaggctaagtggaaacctgttttatcgcacattgtatatt 19034

                                                                         
Query: 800   tcttagtcctttcaccttacggcaatttacaaaatgatttaattcacaaaatccagaatg 859
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19035 tcttagtcctttcaccttacggcaatttacaaaatgatttaattcacaaaatccagaatg 19094

                                                                         
Query: 860   ataacaacctgaaaaaattagaaagccaagaatctttagtaaaattgtttactacgaatg 919
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19095 ataacaacctgaaaaaattagaaagccaagaatctttagtaaaattgtttactacgaatg 19154

                                                                         
Query: 920   agttgatgagatggccaattgttcaaaaaacctatgagcccgtcttaaatgaggatgatt 979
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19155 agttgatgagatggccaattgttcaaaaaacctatgagcccgtcttaaatgaggatgatt 19214

                                                                         
Query: 980   tggcatttggtggagaagctaataagcatcactgggaagatttacaaaaaagggtcatcg 1039
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19215 tggcatttggtggagaagctaataagcatcactgggaagatttacaaaaaagggtcatcg 19274

                                                                         
Query: 1040  agcacaatttaagagtcatttccgaatactattccagaattactttactaagattgaatg 1099
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19275 agcacaatttaagagtcatttccgaatactattccagaattactttactaagattgaatg 19334

                                                                         
Query: 1100  aattgctggacctaacggagagccagacggaaacatacatcagtgatttggtaaaccagg 1159
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19335 aattgctggacctaacggagagccagacggaaacatacatcagtgatttggtaaaccagg 19394

                                                             
Query: 1160  gcatcatatacgctaaagttaatcgcccagccaaaatcgtgaattttg 1207
             ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19395 gcatcatatacgctaaagttaatcgcccagccaaaatcgtgaattttg 19442



 Score =  234 bits (118), Expect = 3e-58
 Identities = 118/118 (100%)
 Strand = Plus / Plus

                                                                         
Query: 1221  ctcaagccaattattgaacgaatggtcacataatgttgacgaactattagaacatataga 1280
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19456 ctcaagccaattattgaacgaatggtcacataatgttgacgaactattagaacatataga 19515

                                                                       
Query: 1281  aacaataggccatttaattacaaaagaggaaatcatgcacggtttgcaagctaaatga 1338
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19516 aacaataggccatttaattacaaaagaggaaatcatgcacggtttgcaagctaaatga 19573


>gi|27924243|gb|BC045091.1| Xenopus laevis, Similar to proteasome (prosome, macropain) 26S
           subunit, non-ATPase, 12, clone IMAGE:5543098, mRNA,
           partial cds
          Length = 1681

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 484 gagttacaggttgagacctatggctccatgg 514
           ||||||||||| ||||||||||| |||||||
Sbjct: 538 gagttacaggtggagacctatggatccatgg 568


>gi|13357539|gb|AC019086.7| Homo sapiens BAC clone RP11-360H4 from 2, complete sequence
          Length = 199934

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 528    aattcagtttatattagagcaaa 550
              |||||||||||||||||||||||
Sbjct: 169670 aattcagtttatattagagcaaa 169648


>gi|6755992|ref|NM_011714.1| Mus musculus bromodomain adjacent to zinc finger domain, 1B
           (Baz1b), mRNA
          Length = 4830

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 47  ttttgaaggaagagtttcctaa 68
           ||||||||||||||||||||||
Sbjct: 510 ttttgaaggaagagtttcctaa 531


>gi|28396632|emb|AL805957.12| Mouse DNA sequence from clone RP23-259P7 on chromosome 4, complete
             sequence
          Length = 197911

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 120   agtgttggagaagaaaaccaga 141
             ||||||||||||||||||||||
Sbjct: 78639 agtgttggagaagaaaaccaga 78618


>gi|12857377|dbj|AK017894.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched
           library, clone:5830404D16 product:bromodomain adjacent
           to zinc finger domain, 1B, full insert sequence
          Length = 1775

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 47  ttttgaaggaagagtttcctaa 68
           ||||||||||||||||||||||
Sbjct: 552 ttttgaaggaagagtttcctaa 573


>gi|4165088|gb|AF084480.1|AF084480 Mus musculus Williams-Beuren syndrome deletion transcript 9 homolog
           (Wbscr9) mRNA, complete cds
          Length = 4830

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 47  ttttgaaggaagagtttcctaa 68
           ||||||||||||||||||||||
Sbjct: 510 ttttgaaggaagagtttcctaa 531


>gi|15624875|gb|AC024607.3| Mus musculus chromosome 5 clone RP23-240H6 strain C57BL6/J, complete
              sequence
          Length = 197273

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 48     tttgaaggaagagtttcctaa 68
              |||||||||||||||||||||
Sbjct: 113621 tttgaaggaagagtttcctaa 113641


>gi|21307386|gb|AC021698.12| Homo sapiens chromosome 11, clone RP11-430L3, complete sequence
          Length = 201673

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 841    attcacaaaatccagaatgataaca 865
              ||||||||||||||||| |||||||
Sbjct: 141978 attcacaaaatccagaaagataaca 141954


>gi|15668129|gb|AC019186.9| Homo sapiens BAC clone RP11-301K6 from 2, complete sequence
          Length = 167101

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 127   gagaagaaaaccagacaagct 147
             |||||||||||||||||||||
Sbjct: 67302 gagaagaaaaccagacaagct 67322


>gi|11181844|gb|AC074115.4| Homo sapiens chromosome 7 clone RP11-291N9, complete sequence
          Length = 81289

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1068  ctattccagaattactttact 1088
             |||||||||||||||||||||
Sbjct: 30639 ctattccagaattactttact 30619


>gi|18030127|gb|AC010476.7| Homo sapiens chromosome 5 clone CTD-2311A18, complete sequence
          Length = 152333

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 822   caatttacaaaatgatttaattcacaaaatcca 854
             ||||||| |||||||| |||| |||||||||||
Sbjct: 47065 caatttaaaaaatgatgtaatacacaaaatcca 47097


>gi|15887319|gb|AC026694.5| Homo sapiens chromosome 5 clone CTC-263A14, complete sequence
          Length = 103872

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 822   caatttacaaaatgatttaattcacaaaatcca 854
             ||||||| |||||||| |||| |||||||||||
Sbjct: 70868 caatttaaaaaatgatgtaatacacaaaatcca 70836


>gi|1573838|gb|U32765.1|U32765 Haemophilus influenzae Rd section 80 of 163 of the complete genome
          Length = 12266

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 765  taagtggaaacctgttttatc 785
            |||||||||||||||||||||
Sbjct: 8083 taagtggaaacctgttttatc 8103


>gi|20983819|ref|XM_159178.1| Mus musculus LOC245394 (LOC245394), mRNA
          Length = 537

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 453 taagattgatgaagctgcag 472
           ||||||||||||||||||||
Sbjct: 228 taagattgatgaagctgcag 209


>gi|22832622|gb|AE003569.3| Drosophila melanogaster chromosome X section 70 of 74 of the complete
             sequence
          Length = 283556

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1294  ttaattacaaaagaggaaat 1313
             ||||||||||||||||||||
Sbjct: 22127 ttaattacaaaagaggaaat 22146


>gi|13385383|ref|NM_025894.1| Mus musculus proteasome (prosome, macropain) 26S subunit,
           non-ATPase, 12 (Psmd12), mRNA
          Length = 1727

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 484 gagttacaggttgagacctatggctccatgga 515
           ||||||||||| || |||||||| ||||||||
Sbjct: 554 gagttacaggtggaaacctatgggtccatgga 585


>gi|27819570|gb|AC124817.2| Branchiostoma floridae, clone -10F3, complete sequence
          Length = 133980

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 825   tttacaaaatgatttaattc 844
             ||||||||||||||||||||
Sbjct: 16112 tttacaaaatgatttaattc 16131


>gi|27695636|gb|BC042999.1| Homo sapiens, Similar to RIKEN cDNA 4930556B16 gene, clone MGC:44431
            IMAGE:5297392, mRNA, complete cds
          Length = 3321

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 880  gaaagccaagaatctttagt 899
            ||||||||||||||||||||
Sbjct: 1210 gaaagccaagaatctttagt 1229


>gi|27228869|gb|AC093424.3| Homo sapiens chromosome 1 clone RP11-467C18, complete sequence
          Length = 153854

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 532   cagtttatattagagcaaat 551
             ||||||||||||||||||||
Sbjct: 55992 cagtttatattagagcaaat 55973


>gi|24195269|gb|AE011342.1| Leptospira interrogans serovar lai str. 56601 chromosome I, section
            151 of 397 of the complete sequence
          Length = 10425

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 1080 tactttactaagattgaatgaatt 1103
            |||||| |||||||||||||||||
Sbjct: 8960 tacttttctaagattgaatgaatt 8937


>gi|13435644|gb|BC004694.1| Mus musculus, RIKEN cDNA 1500002F15 gene, clone MGC:6375
           IMAGE:3498952, mRNA, complete cds
          Length = 1515

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 484 gagttacaggttgagacctatggctccatgga 515
           ||||||||||| || |||||||| ||||||||
Sbjct: 569 gagttacaggtggaaacctatgggtccatgga 600


>gi|22507047|gb|AC116360.2| Homo sapiens chromosome 5 clone RP11-69F12, complete sequence
          Length = 45844

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1160  gcatcatatacgctaaagtt 1179
             ||||||||||||||||||||
Sbjct: 43817 gcatcatatacgctaaagtt 43836


>gi|22218575|gb|AC068413.11| Homo sapiens chromosome 8, clone RP11-273I9, complete sequence
          Length = 157865

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 872   aaaaattagaaagccaagaa 891
             ||||||||||||||||||||
Sbjct: 33757 aaaaattagaaagccaagaa 33738


>gi|21281478|gb|AC104111.2| Homo sapiens chromosome 5 clone RP11-176O14, complete sequence
          Length = 171234

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 421    aaagatttggtggaaattaa 440
              ||||||||||||||||||||
Sbjct: 150586 aaagatttggtggaaattaa 150605


>gi|19698740|gb|AC104814.5| Homo sapiens BAC clone RP11-683C4 from 4, complete sequence
          Length = 182155

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 978    tttggcatttggtggagaag 997
              ||||||||||||||||||||
Sbjct: 176296 tttggcatttggtggagaag 176277


>gi|19747180|gb|AC114278.2| Homo sapiens chromosome 5 clone CTD-2154H5, complete sequence
          Length = 99759

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 421   aaagatttggtggaaattaa 440
             ||||||||||||||||||||
Sbjct: 10991 aaagatttggtggaaattaa 11010


>gi|18497230|gb|AC093814.3| Homo sapiens BAC clone RP11-362I16 from 4, complete sequence
          Length = 163201

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 292    caaaaggttatggaatatttgaaaagct 319
              |||||||||||| |||||||||| ||||
Sbjct: 146078 caaaaggttatgtaatatttgaatagct 146105


>gi|17149787|gb|AC097655.2| Homo sapiens BAC clone RP11-284H12 from 4, complete sequence
          Length = 77111

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 873   aaaattagaaagccaagaat 892
             ||||||||||||||||||||
Sbjct: 21294 aaaattagaaagccaagaat 21313


>gi|15668097|gb|AC092583.2| Homo sapiens BAC clone RP11-19B22 from 2, complete sequence
          Length = 155359

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1066  tactattccagaattacttt 1085
             ||||||||||||||||||||
Sbjct: 69897 tactattccagaattacttt 69916


>gi|18425292|gb|AC103590.2| Homo sapiens chromosome 1 clone RP11-544K18, complete sequence
          Length = 213056

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 831    aaatgatttaattcacaaaa 850
              ||||||||||||||||||||
Sbjct: 190429 aaatgatttaattcacaaaa 190410


>gi|17940006|gb|AF316500.1|AF316500 Leptospira interrogans strain L170 rfb locus, complete sequence
          Length = 34723

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 1080  tactttactaagattgaatgaatt 1103
             |||||| |||||||||||||||||
Sbjct: 10683 tacttttctaagattgaatgaatt 10660


>gi|13346888|gb|U61226.2|LIU61226 Leptospira interrogans serovar Copenhageni rfb locus, complete sequence
          Length = 36040

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 1080  tactttactaagattgaatgaatt 1103
             |||||| |||||||||||||||||
Sbjct: 13156 tacttttctaagattgaatgaatt 13133


>gi|17047070|gb|AC012602.4| Homo sapiens chromosome 5 clone CTC-328N13, complete sequence
          Length = 90963

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 563   tattaaaaggtgattattcc 582
             ||||||||||||||||||||
Sbjct: 83275 tattaaaaggtgattattcc 83294


>gi|16874827|gb|AC099308.1| Drosophila melanogaster, chromosome X, region 19C-19D, BAC clone
             BACR11M14, complete sequence
          Length = 173101

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1294  ttaattacaaaagaggaaat 1313
             ||||||||||||||||||||
Sbjct: 90578 ttaattacaaaagaggaaat 90559


>gi|23504644|emb|AL929353.1|PFA929353 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4
          Length = 343050

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 374   ttacagagaacaaaatattt 393
             ||||||||||||||||||||
Sbjct: 63718 ttacagagaacaaaatattt 63699


>gi|15187237|gb|AC021078.5| Homo sapiens chromosome 5 clone CTB-89H12, complete sequence
          Length = 145050

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1160  gcatcatatacgctaaagtt 1179
             ||||||||||||||||||||
Sbjct: 10139 gcatcatatacgctaaagtt 10158


>gi|14030839|gb|AC021842.7|AC021842 Homo sapiens chromosome 8, clone RP11-472N16, complete sequence
          Length = 190044

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 1265 tattagaacatatagaaacaatag 1288
            |||||||| |||||||||||||||
Sbjct: 4901 tattagaaaatatagaaacaatag 4924


>gi|25136664|emb|AL844609.6| Mouse DNA sequence from clone RP23-356F8 on chromosome 4, complete
             sequence
          Length = 191676

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 535   tttatattagagcaaatggaattg 558
             ||||||||||||| ||||||||||
Sbjct: 47455 tttatattagagctaatggaattg 47432


>gi|24474485|emb|AL928620.5| Mouse DNA sequence from clone RP23-319M16 on chromosome 2, complete
            sequence
          Length = 82646

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 523  gagaaaattcagtttatatt 542
            ||||||||||||||||||||
Sbjct: 9518 gagaaaattcagtttatatt 9537


>gi|16412145|emb|AL591984.1| Listeria monocytogenes strain EGD, complete genome, segment 12/12
          Length = 225528

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 719   atctgcaagaaatttatcaa 738
             ||||||||||||||||||||
Sbjct: 99075 atctgcaagaaatttatcaa 99094


>gi|12597739|gb|AC022368.2|AC022368 Mus musculus clone RP23-192D21 strain C57BL6/J, complete sequence
          Length = 207757

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   gaagaaaaccagacaagctt 148
             ||||||||||||||||||||
Sbjct: 83344 gaagaaaaccagacaagctt 83325


>gi|11095123|gb|AC084677.1|CBRG47L22 Caenorhabditis briggsae cosmid G47L22, complete sequence
          Length = 43559

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 343  agaattagtgtcattgaaac 362
            ||||||||||||||||||||
Sbjct: 3941 agaattagtgtcattgaaac 3922


>gi|11095013|gb|AC084563.1|CBRG36E21 Caenorhabditis briggsae cosmid G36E21, complete sequence
          Length = 38866

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 620  cttttaaaaatccaaaatacgagt 643
            |||||||||||||||||| |||||
Sbjct: 2683 cttttaaaaatccaaaatccgagt 2660


>gi|5019262|gb|AC007190.4|AC007190 Genomic sequence for Arabidopsis thaliana BAC F23N19 from chromosome I,
             complete sequence
          Length = 86801

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 772   aaacctgttttatcgcacat 791
             ||||||||||||||||||||
Sbjct: 75906 aaacctgttttatcgcacat 75887


>gi|7408135|gb|AC010150.3|AC010150 Homo sapiens BAC clone RP11-404P12 from 2, complete sequence
          Length = 173893

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 880   gaaagccaagaatctttagt 899
             ||||||||||||||||||||
Sbjct: 44477 gaaagccaagaatctttagt 44496


>gi|28411858|dbj|AP005716.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1445E9, complete
              sequence
          Length = 151880

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 872    aaaaattagaaagccaagaa 891
              ||||||||||||||||||||
Sbjct: 145779 aaaaattagaaagccaagaa 145760


>gi|12857303|dbj|AK017843.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:5730557A15 product:proteasome
           (prosome, macropain) 26S subunit, non-ATPase, 12, full
           insert sequence
          Length = 1575

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 484 gagttacaggttgagacctatggctccatgga 515
           ||||||||||| || |||||||| ||||||||
Sbjct: 568 gagttacaggtggaaacctatgggtccatgga 599


>gi|12848163|dbj|AK011806.1| Mus musculus 10 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:2610103D22 product:proteasome
           (prosome, macropain) 26S subunit, non-ATPase, 12, full
           insert sequence
          Length = 691

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 484 gagttacaggttgagacctatggctccatgga 515
           ||||||||||| || |||||||| ||||||||
Sbjct: 575 gagttacaggtggaaacctatgggtccatgga 606


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
  or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Mar 20, 2003 10:39 PM
  Number of letters in database: -658,021,059
  Number of sequences in database:  1,707,549
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,940,332
Number of Sequences: 1707549
Number of extensions: 6940332
Number of successful extensions: 37765
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37657
Number of HSP's gapped (non-prelim): 108
length of query: 1338
length of database: 7,931,913,529
effective HSP length: 22
effective length of query: 1316
effective length of database: 7,894,347,451
effective search space: 10388961245516
effective search space used: 10388961245516
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)








 

BLASTX 2.2.5 [Nov-16-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
RID: 1048254844-07464-3060
Query= ORFN:YDL147W RPN5 SGDID:S0002306, Chr IV from 190925-192262
         (1338 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           1,376,251 sequences; 442,128,549 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|6320054|ref|NP_010134.1| Regulatory Particle Non-ATPase, homo...   846   0.0  
gi|28927232|gb|EAA36187.1| hypothetical protein [Neurospora crassa]   390   e-107
gi|19114190|ref|NP_593278.1| putative proteasome regulatory subu...   364   2e-99
gi|27503944|gb|AAH42325.1| Similar to proteasome (prosome, macro...   361   2e-98
gi|12857304|dbj|BAB30969.1| unnamed protein product [Mus musculus]    357   2e-97
gi|13385384|ref|NP_080170.1| proteasome 26S non-ATPase subunit 1...   356   4e-97
gi|4506221|ref|NP_002807.1| proteasome 26S non-ATPase subunit 12...   356   5e-97
gi|27924244|gb|AAH45091.1| Similar to proteasome (prosome, macro...   352   1e-95
gi|20978555|sp|Q9D8W5|PSDC_MOUSE 26S proteasome non-ATPase regul...   350   4e-95
gi|28872765|ref|NP_777360.1| proteasome 26S non-ATPase subunit 1...   339   5e-92
gi|27573351|gb|AAO20069.1| putative proteasome regulatory non-AT...   296   6e-79
gi|21299679|gb|EAA11824.1| agCP6544 [Anopheles gambiae str. PEST]     293   4e-78
gi|15242545|ref|NP_196552.1| 26S proteasome regulatory subunit (...   286   7e-76
gi|10177207|dbj|BAB10309.1| proteasome regulatory subunit-like [...   285   9e-76
gi|18424863|ref|NP_568994.1| 26S proteasome regulatory subunit (...   285   9e-76
gi|17063181|gb|AAL32985.1| AT5g64760/MVP7_9 [Arabidopsis thalian...   285   9e-76
gi|17533097|ref|NP_494835.1| Proteasome Regulatory Particle, Non...   278   2e-73
gi|21357319|ref|NP_649588.1| CG1100-PA [Drosophila melanogaster]...   251   2e-65
gi|23507978|ref|NP_700648.1| 26s proteasome subunit p55, putativ...   240   3e-62
gi|23490305|gb|EAA22115.1| hypothetical protein [Plasmodium yoel...   236   6e-61
gi|27690079|ref|XP_213502.1| similar to proteasome (prosome, mac...   175   1e-42
gi|9368505|emb|CAB98159.1| proteasome subunit [Leishmania major]      163   5e-39
gi|12848164|dbj|BAB27853.1| unnamed protein product [Mus musculus]    163   7e-39
gi|17298157|dbj|BAB78500.1| 26S proteasome regulatory particle n...   155   2e-36
gi|18463069|gb|AAL72636.1|AF410930_1 proteasome regulatory non-A...   148   2e-34
gi|19173648|ref|NP_597451.1| hypothetical protein [Encephalitozo...   128   2e-28
gi|27713826|ref|XP_232692.1| similar to proteasome (prosome, mac...    71   4e-11
gi|7705845|ref|NP_057213.1| COP9 complex subunit 4; likely ortho...    59   2e-07
gi|13279173|gb|AAH04302.1| similar to COP9 [Homo sapiens] >gi|14...    59   2e-07
gi|6753490|ref|NP_036131.1| COP9 (constitutive photomorphogenic)...    59   2e-07
gi|7022321|dbj|BAA91555.1| unnamed protein product [Homo sapiens]      59   2e-07
gi|21553897|gb|AAK14055.2|AF236662_1 COP9 signalosome subunit 4 ...    55   2e-06
gi|25453533|pir||T52302 COP9 signalosome chain COP8 [validated] ...    50   6e-05
gi|15239134|ref|NP_199111.1| COP9 complex subunit, FUS4; protein...    49   1e-04
gi|21592680|gb|AAM64629.1| COP8 (constitutive photomorphogenic) ...    49   2e-04
gi|7458799|gb|AAB41263.3| rhoptry protein [Plasmodium yoelii]          46   0.002
gi|7494466|pir||T28676 rhoptry protein - Plasmodium yoelii (frag...    45   0.002
gi|28830076|gb|AAO52566.1| similar to Dictyostelium discoideum (...    44   0.006
gi|28268803|dbj|BAC56911.1| kinesin-related protein DdKin2 [Dict...    44   0.006
gi|23490461|gb|EAA22233.1| hypothetical protein [Plasmodium yoel...    43   0.013
gi|28919460|gb|EAA28898.1| hypothetical protein [Neurospora crassa]    42   0.022
gi|28557139|dbj|BAC57573.1| tropomyosin4-2 [Takifugu rubripes]         42   0.029
gi|21289530|gb|EAA01823.1| agCP12297 [Anopheles gambiae str. PEST]     41   0.038
gi|6980978|ref|NP_036868.1| glycerol-3-phosphate dehydrogenase 2...    41   0.038
gi|24286670|gb|AAN46878.1| nucleotide exchange factor RasGEF I [...    41   0.049
gi|18309971|ref|NP_561905.1| L-serine dehydratase alpha subunit ...    40   0.11 
gi|23957777|ref|NP_473326.2| hypothetical protein [Plasmodium fa...    40   0.11 
gi|23509080|ref|NP_701748.1| hypothetical protein [Plasmodium fa...    39   0.19 
gi|171959|gb|AAA34783.1| myosin-like protein                           39   0.19 
gi|6322948|ref|NP_013021.1| involved in translocation of macromo...    39   0.19 
gi|1903280|emb|CAA98620.1| ORF YDL058w [Saccharomyces cerevisiae]      39   0.24 
gi|6320145|ref|NP_010225.1| involved intracellular protein trans...    39   0.24 
gi|137175|sp|P25386|USO1_YEAST Intracellular protein transport p...    39   0.24 
gi|2275288|gb|AAB63869.1| unknown [Schizosaccharomyces pombe]          38   0.32 
gi|11497447|ref|NP_051541.1| conserved hypothetical protein [Bor...    38   0.32 
gi|23028892|ref|ZP_00067268.1| hypothetical protein [Microbulbif...    38   0.42 
gi|1345860|sp|P49025|CTRO_MOUSE Citron protein (Rho-interacting,...    38   0.42 
gi|22062027|ref|XP_045786.2| similar to Citron protein (Rho-inte...    38   0.42 
gi|19387215|gb|AAL87138.1| tropomyosin [Ambystoma mexicanum]           38   0.42 
gi|1216293|gb|AAA91763.1| cardiac tropomyosin                          38   0.42 
gi|3599509|gb|AAC72823.1| rho/rac-interacting citron kinase [Mus...    38   0.42 
gi|4589542|dbj|BAA76793.1| KIAA0949 protein [Homo sapiens]             38   0.42 
gi|3360514|gb|AAC27933.1| Citron-K kinase [Mus musculus]               38   0.42 
gi|6225217|sp|O14578|CTRO_HUMAN Citron protein (Rho-interacting,...    38   0.42 
gi|20841360|ref|XP_132275.1| citron [Mus musculus]                     38   0.42 
gi|4502781|ref|NP_001804.1| centromere protein E; Centromere aut...    37   0.54 
gi|382658|prf||1819485A CENP-E protein                                 37   0.54 
gi|24115655|gb|AAN46923.1|AF472533_28 unknown [Campylobacter jej...    37   0.54 
gi|18417676|ref|NP_568314.1| HSP100/ClpB, putative; protein id: ...    37   0.54 
gi|23613114|ref|NP_703436.1| chromosome condensation protein, pu...    37   0.71 
gi|17538982|ref|NP_501517.1| Predicted CDS, CLIP-170 like protei...    37   0.71 
gi|23489781|gb|EAA21707.1| hypothetical protein [Plasmodium yoel...    37   0.71 
gi|19074483|ref|NP_585989.1| RAD50-LIKE DNA REPAIR PROTEIN [Ence...    37   0.71 
gi|28557134|dbj|BAC57571.1| tropomyosin4-1 [Takifugu rubripes]         37   0.71 
gi|23479871|gb|EAA16587.1| R27-2 protein [Plasmodium yoelii yoelii]    37   0.71 
gi|23483873|gb|EAA19395.1| hypothetical protein [Plasmodium yoel...    37   0.71 
gi|6005904|ref|NP_009045.1| TATA element modulatory factor 1 [Ho...    37   0.71 
gi|5690420|gb|AAD47078.1|AF164347_1 developmental protein DG1113...    37   0.71 
gi|24217425|ref|NP_714908.1| transcriptional regulator (FIS fami...    37   0.93 
gi|16804929|ref|NP_472958.1| hypothetical protein [Plasmodium fa...    37   0.93 
gi|2425111|gb|AAB70839.1| ZipA [Dictyostelium discoideum]              37   0.93 
gi|23485985|gb|EAA20682.1| rhoptry protein [Plasmodium yoelii yo...    37   0.93 
gi|677198|gb|AAB00143.1| putative                                      37   0.93 
gi|20067169|gb|AAM09531.1|AF491294_1 LCCL domain-containing prot...    36   1.2  
gi|6677761|ref|NP_033098.1| Rho-associated coiled-coil forming k...    36   1.2  
gi|6981478|ref|NP_037154.1| rhoA - binding serine/threosine kina...    36   1.2  
gi|20807996|ref|NP_623167.1| hypothetical protein [Thermoanaerob...    36   1.6  
gi|28202216|ref|NP_777457.1| NADH dehydrogenase ND2 subunit [Ant...    36   1.6  
gi|11465847|ref|NP_053991.1| preprotein translocase subunit SecA...    36   1.6  
gi|13928854|ref|NP_113933.1| restin (Reed-Steinberg cell-espress...    36   1.6  
gi|17510017|ref|NP_491169.1| Predicted CDS, integrase like prote...    36   1.6  
gi|15081481|ref|NP_149994.1| ParB protein [Clostridium perfringe...    36   1.6  
gi|13357244|gb|AAK20041.1|AC025783_1 putative kinesin-related pr...    36   1.6  
gi|15232528|ref|NP_188140.1| putative MAP kinase; protein id: At...    35   2.1  
gi|15606308|ref|NP_213687.1| hypothetical protein [Aquifex aeoli...    35   2.1  
gi|23595064|ref|XP_137083.2| similar to serologically defined br...    35   2.1  
gi|20545312|ref|XP_115620.1| similar to hypothetical protein [Pl...    35   2.1  
gi|27948469|gb|AAO25554.1| CAST2 [Rattus norvegicus]                   35   2.1  
gi|2062371|gb|AAB65850.1| SnoN2 [Homo sapiens]                         35   2.1  
gi|25140987|ref|NP_740769.1| ELKS protein [Rattus norvegicus] >g...    35   2.1  

ALIGNMENTS
>gi|6320054|ref|NP_010134.1| Regulatory Particle Non-ATPase, homolog of mammalian proteasomal
            subunit p55; Rpn5p [Saccharomyces cerevisiae]
 gi|20978675|sp|Q12250|RPN5_YEAST 26S proteasome regulatory subunit RPN5 (Proteasome non-ATPase subunit
            5)
 gi|2131346|pir||S67695 26S proteasome regulatory complex chain RPN5 - yeast  (Saccharomyces
            cerevisiae)
 gi|1321957|emb|CAA66344.1| D1572 [Saccharomyces cerevisiae]
 gi|1431231|emb|CAA98721.1| ORF YDL147w [Saccharomyces cerevisiae]
          Length = 445

 Score =  846 bits (2185), Expect = 0.0
 Identities = 435/445 (97%), Positives = 435/445 (97%)
 Frame = +1

Query: 1    MSRDAPIKADKDYSQILKEEFPKIDSLAQNDCNSALDQLLVLEKKTRQASDLASSKEVLA 180
            MSRDAPIKADKDYSQILKEEFPKIDSLAQNDCNSALDQLLVLEKKTRQASDLASSKEVLA
Sbjct: 1    MSRDAPIKADKDYSQILKEEFPKIDSLAQNDCNSALDQLLVLEKKTRQASDLASSKEVLA 60

Query: 181  KIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIE 360
            KIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIE
Sbjct: 61   KIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIE 120

Query: 361  TIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFI 540
            TIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFI
Sbjct: 121  TIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFI 180

Query: 541  LEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQY 720
            LEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQY
Sbjct: 181  LEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQY 240

Query: 721  LQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLV 900
            LQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLV
Sbjct: 241  LQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLV 300

Query: 901  KLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRI 1080
            KLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRI
Sbjct: 301  KLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRI 360

Query: 1081 TXXXXXXXXXXTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVD 1260
            T          TESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVD
Sbjct: 361  TLLRLNELLDLTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVD 420

Query: 1261 ELLEHIETIGHLITKEEIMHGLQAK 1335
            ELLEHIETIGHLITKEEIMHGLQAK
Sbjct: 421  ELLEHIETIGHLITKEEIMHGLQAK 445


>gi|28927232|gb|EAA36187.1| hypothetical protein [Neurospora crassa]
          Length = 494

 Score =  390 bits (1001), Expect = e-107
 Identities = 208/474 (43%), Positives = 300/474 (63%), Gaps = 38/474 (8%)
 Frame = +1

Query: 22   KADKDYSQILKEEFPKIDSLAQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLA 201
            K +KD+S+ + +  P+ + LA+ D  +A+++L VLEK+TRQASDLAS+  +L  IV +  
Sbjct: 7    KPEKDFSKEVDKLLPEAEQLAKTDIQAAIEKLSVLEKQTRQASDLASTSRILVAIVTICK 66

Query: 202  SRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTE 381
            +   W  LN+Q  +LSKKHGQLK +I  M+Q V+++L  + +L+  T++SVIET+R VTE
Sbjct: 67   NAGDWSLLNDQTLVLSKKHGQLKQAITKMVQTVIDFLPETPNLE--TKLSVIETLRTVTE 124

Query: 382  NKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 561
             KIF+EVERARVTK L +IKKE+G +  A DILCELQVET+GSM+  EK +FIL Q+ L 
Sbjct: 125  GKIFLEVERARVTKILSDIKKEQGDLKAATDILCELQVETFGSMDRREKTEFILAQVALC 184

Query: 562  ILKGDYSQATVLSRKILKKTF-------------------------------KNPKYESL 648
            I   D++QA +LSRKI  K                                 K      L
Sbjct: 185  IESKDWTQAGILSRKISTKYLARRPKKTQEQLDKEQKDREAKKARGEEVSEEKEDDVTDL 244

Query: 649  KLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNL 828
            KL YY   + ++ H   YL+V +Y +++  T+A++ D AK + VL  I+YF++L+P+ N 
Sbjct: 245  KLRYYEQQIILAKHDSRYLDVCKYYRQVLDTEAVEEDPAKLQAVLQRIIYFIILAPHDNE 304

Query: 829  QNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANK- 1005
            Q+DL+H+I  D  + ++     L+KLFT +ELMRWP V K + P L   ++ F  E N+ 
Sbjct: 305  QHDLLHRIHKDPRIAQVPQDAELLKLFTVHELMRWPEVSKIFGPHLCSTEI-FDSEPNQS 363

Query: 1006 ------HHWEDLQKRVIEHNLRVISEYYSRITXXXXXXXXXXTESQTETYISDLVNQGII 1167
                    W+DL+KRVIEHN+RV+++YY+RI           TE +TE YIS+LV    +
Sbjct: 364  ADDKAFQRWQDLRKRVIEHNVRVVAKYYTRIRVDRLTQLLDLTEDETEKYISELVTSKTV 423

Query: 1168 YAKVNRPAKIVNFEKPKNSSQLLNEWSHNVDELLEHIETIGHLITKEEIMHGLQ 1329
            YAK++RPA+IV+F KP+++  +LNEWS N+  LL H+E I HLITKEE+M  +Q
Sbjct: 424  YAKIDRPARIVSFAKPRDADDILNEWSFNMKSLLGHLERIDHLITKEEMMARIQ 477


>gi|19114190|ref|NP_593278.1| putative proteasome regulatory subunit [Schizosaccharomyces pombe]
 gi|19115688|ref|NP_594776.1| 26s proteosome complex; yeast RPN5 homologue; PCI domain; duplicated
            in S. pombe [Schizosaccharomyces pombe]
 gi|20978744|sp|Q9UTM3|RPN5_SCHPO Probable 26S proteasome regulatory subunit rpn5
 gi|7492858|pir||T37666 26S proteasome regulatory complex chain p31 - fission yeast
            (Schizosaccharomyces pombe)
 gi|6013111|emb|CAB57322.1| putative proteasome regulatory subunit [Schizosaccharomyces pombe]
 gi|13810232|emb|CAC37421.1| 19S proteasome regulatory subunit; Non-ATPase subunit; similar to S.
            cerevisiae RPN5; contains PCI domain; duplicated in S.
            pombe see rpn5-a [Schizosaccharomyces pombe]
          Length = 443

 Score =  364 bits (934), Expect = 2e-99
 Identities = 187/437 (42%), Positives = 280/437 (64%), Gaps = 1/437 (0%)
 Frame = +1

Query: 22   KADKDYSQILKEEFPKIDSLAQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLA 201
            K + DYS+   E    +++L   D ++ L++LL+ EK+ RQASD +++ +VL  I DLL 
Sbjct: 4    KPEVDYSEKFAELQKSLNNLNTIDIDANLEKLLIFEKQVRQASDTSTNTKVLIYIADLLF 63

Query: 202  SRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTE 381
                +  LNEQL  L KKHGQLK S+  ++Q VM YL      DL T+I++IET+R +T+
Sbjct: 64   RAGDFQGLNEQLVSLFKKHGQLKQSMTSLVQHVMTYLPGID--DLKTKINLIETLRTITD 121

Query: 382  NKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 561
             KI+VEVERAR+T+ L +IK+E+G I  A +ILC   VETYGS ++ EK+ FIL+Q+ L 
Sbjct: 122  GKIYVEVERARLTQLLSQIKEEQGDIKSAQEILCNEPVETYGSFDLKEKVAFILDQVRLF 181

Query: 562  ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 741
            +L+ DY  A+  ++KI  K F+    +SLKL+YY   ++I LH   YL+V +Y + +Y T
Sbjct: 182  LLRSDYYMASTYTKKINVKFFEKEDVQSLKLKYYEQKIRIGLHDDAYLDVCKYYRAVYDT 241

Query: 742  DAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNE 921
              ++ D  KWK +L ++V F +L+PY N Q DL+H+I  D+ L  L   + LVK F  NE
Sbjct: 242  AVVQEDPEKWKEILENVVCFALLTPYDNEQADLLHRINADHKLNSLPLLQQLVKCFIVNE 301

Query: 922  LMRWPIVQKTYEPVLNEDDL-AFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITXXXXX 1098
            LMRWP + + Y   L  + + A   E  +  W +L+KRVIEHN+RV++ YYSRI      
Sbjct: 302  LMRWPKIAEIYGSALRSNPVFAENDEKGEKRWSELRKRVIEHNIRVVANYYSRIHCSRLG 361

Query: 1099 XXXXXTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVDELLEHI 1278
                 + S+TE ++ DL+ +   YAK++RPA++++F+K +N  + LNEW  N+ ELL  +
Sbjct: 362  VLLDMSPSETEQFLCDLIAKHHFYAKIDRPAQVISFKKSQNVQEQLNEWGSNITELLGKL 421

Query: 1279 ETIGHLITKEEIMHGLQ 1329
            E +  LI KEE+M+ +Q
Sbjct: 422  EKVRQLIIKEEMMNSIQ 438


>gi|27503944|gb|AAH42325.1| Similar to proteasome (prosome, macropain) 26S subunit, non-ATPase,
            12 [Danio rerio]
          Length = 456

 Score =  361 bits (926), Expect = 2e-98
 Identities = 184/445 (41%), Positives = 280/445 (62%), Gaps = 8/445 (1%)
 Frame = +1

Query: 19   IKADKDYSQILKEEFPKIDSLAQND-CNSALDQLLVLEKKTRQASDLASSKEVLAKIVDL 195
            +K + DYS  + E  P+ + +A++     A++ LL LEK+TR ASD+ S+  +L  IV L
Sbjct: 14   VKMEVDYSATVDERLPECEKMAKDGRLQEAVESLLSLEKQTRTASDMVSTSRILVAIVQL 73

Query: 196  LASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVV 375
                  WD LNE + LLSK+  QLK ++  M+Q+  +Y+ +    DL+ ++ +I+T+R V
Sbjct: 74   CYEAKDWDALNENIMLLSKRRSQLKQAVAKMVQECYKYVDAMT--DLSIKLRLIDTLRTV 131

Query: 376  TENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 555
            T  KI+VE+ERAR+TK L  IK++ G + EAA IL ELQVETYGSME  EK +FILEQM 
Sbjct: 132  TAGKIYVEIERARLTKTLAHIKEQSGDVKEAAAILQELQVETYGSMEKKEKAEFILEQMR 191

Query: 556  LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 735
            L I   DY +  ++S+KI  K F+    E LKL+YYNL++++ LH+  YL + ++ + IY
Sbjct: 192  LCIAVKDYIRTQIISKKINTKFFQEEGTEELKLKYYNLMIQVDLHEGSYLSICKHYRAIY 251

Query: 736  QTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTT 915
             T  I  D +KW+  L  +V +++L+PY N Q+DL+H+I  D  L+++     L+K FTT
Sbjct: 252  DTPCILEDSSKWQQALKSVVLYVILAPYDNEQSDLVHRISTDKKLEEIPKYRDLLKQFTT 311

Query: 916  NELMRWPIVQKTYEPVLNE-------DDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYS 1074
             ELMRW  V + Y   L E        D+    E  +  W+DL+ RV+EHN+R++++YY+
Sbjct: 312  MELMRWSSVVEDYGKELREGSMGTPDTDVFTCTEEGEKRWKDLKNRVVEHNIRIMAKYYT 371

Query: 1075 RITXXXXXXXXXXTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHN 1254
             IT          +  ++E ++S+LV    IYAKV+R A I+NF++PK+ + LLN+WS  
Sbjct: 372  SITMGRMAALLDLSVDESEEFLSNLVVNKTIYAKVDRLAGIINFQRPKDPNDLLNDWSQK 431

Query: 1255 VDELLEHIETIGHLITKEEIMHGLQ 1329
            ++ L+  +    HLI KEE++H LQ
Sbjct: 432  LNSLMSLVNKTTHLIAKEEMIHNLQ 456


>gi|12857304|dbj|BAB30969.1| unnamed protein product [Mus musculus]
          Length = 456

 Score =  357 bits (917), Expect = 2e-97
 Identities = 176/445 (39%), Positives = 286/445 (64%), Gaps = 8/445 (1%)
 Frame = +1

Query: 19   IKADKDYSQILKEEFPKIDSLAQND-CNSALDQLLVLEKKTRQASDLASSKEVLAKIVDL 195
            +K + DYS  + +  P+ + LA+       ++ LL LEK+TR ASD+ S+  +L  +V +
Sbjct: 14   VKMEVDYSATVDQRLPECEKLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKM 73

Query: 196  LASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVV 375
                 +WD LNE + LLSK+  QLK ++  M+Q+   Y++  +  DL  ++ +I+T+R+V
Sbjct: 74   CYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVE--EITDLPVKLRLIDTLRMV 131

Query: 376  TENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 555
            TE KI+VE+ERAR+TK L  IK++ G + EAA IL ELQVETYGSME  E+++FILEQM 
Sbjct: 132  TEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMR 191

Query: 556  LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 735
            L +   DY +  ++SRKI  K F+    E+LKL+YYNL++++  H+  YL + ++ + IY
Sbjct: 192  LCLAVKDYIRTQIISRKINTKFFQEENTENLKLKYYNLMIQLDQHEGSYLSICKHYRAIY 251

Query: 736  QTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTT 915
             T  I+++  KW+  L  +V +++L+P+ N Q+DL+H+I +D  L+++   + L+KLFTT
Sbjct: 252  DTPCIQAESDKWQQALKSVVLYVILAPFDNEQSDLVHRISSDKKLEEIPKYKDLLKLFTT 311

Query: 916  NELMRWPIVQKTYEPVLNE-------DDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYS 1074
             ELMRW  + + Y   L +        D+    E  +  W+DL+ RV+EHN+R++++YY+
Sbjct: 312  MELMRWSTLVEDYGVELRKGSSETPATDVFSSTEEGEKRWKDLKSRVVEHNIRIMAKYYT 371

Query: 1075 RITXXXXXXXXXXTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHN 1254
            RIT          +  ++E ++S+LV    I+AKV+R A ++NF++PK+ + LLN+WS  
Sbjct: 372  RITMKGMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGVINFQRPKDPNNLLNDWSQK 431

Query: 1255 VDELLEHIETIGHLITKEEIMHGLQ 1329
            ++ L+  +    HLI KEE++H LQ
Sbjct: 432  LNSLMSLVNKTTHLIAKEEMIHNLQ 456


>gi|13385384|ref|NP_080170.1| proteasome 26S non-ATPase subunit 12 [Mus musculus]
 gi|12841378|dbj|BAB25184.1| unnamed protein product [Mus musculus]
 gi|12845096|dbj|BAB26619.1| unnamed protein product [Mus musculus]
 gi|13435645|gb|AAH04694.1| RIKEN cDNA 1500002F15 gene [Mus musculus]
          Length = 456

 Score =  356 bits (914), Expect = 4e-97
 Identities = 175/445 (39%), Positives = 286/445 (64%), Gaps = 8/445 (1%)
 Frame = +1

Query: 19   IKADKDYSQILKEEFPKIDSLAQND-CNSALDQLLVLEKKTRQASDLASSKEVLAKIVDL 195
            +K + DYS  + +  P+ + LA+       ++ LL LEK+TR ASD+ S+  +L  +V +
Sbjct: 14   VKMEVDYSATVDQRLPECEKLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKM 73

Query: 196  LASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVV 375
                 +WD LNE + LLSK+  QLK ++  M+Q+   Y++  +  DL  ++ +I+T+R+V
Sbjct: 74   CYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVE--EITDLPVKLRLIDTLRMV 131

Query: 376  TENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 555
            TE KI+VE+ERAR+TK L  IK++ G + EAA IL ELQVETYGSME  E+++FILEQM 
Sbjct: 132  TEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMR 191

Query: 556  LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 735
            L +   DY +  ++S+KI  K F+    E+LKL+YYNL++++  H+  YL + ++ + IY
Sbjct: 192  LCLAVKDYIRTQIISKKINTKFFQEENTENLKLKYYNLMIQLDQHEGSYLSICKHYRAIY 251

Query: 736  QTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTT 915
             T  I+++  KW+  L  +V +++L+P+ N Q+DL+H+I +D  L+++   + L+KLFTT
Sbjct: 252  DTPCIQAESDKWQQALKSVVLYVILAPFDNEQSDLVHRISSDKKLEEIPKYKDLLKLFTT 311

Query: 916  NELMRWPIVQKTYEPVLNE-------DDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYS 1074
             ELMRW  + + Y   L +        D+    E  +  W+DL+ RV+EHN+R++++YY+
Sbjct: 312  MELMRWSTLVEDYGVELRKGSSETPATDVFSSTEEGEKRWKDLKSRVVEHNIRIMAKYYT 371

Query: 1075 RITXXXXXXXXXXTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHN 1254
            RIT          +  ++E ++S+LV    I+AKV+R A ++NF++PK+ + LLN+WS  
Sbjct: 372  RITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGVINFQRPKDPNNLLNDWSQK 431

Query: 1255 VDELLEHIETIGHLITKEEIMHGLQ 1329
            ++ L+  +    HLI KEE++H LQ
Sbjct: 432  LNSLMSLVNKTTHLIAKEEMIHNLQ 456


>gi|4506221|ref|NP_002807.1| proteasome 26S non-ATPase subunit 12 isoform 1; 26S proteasome
            regulatory subunit p55 [Homo sapiens]
 gi|20978544|sp|O00232|PSDC_HUMAN 26S proteasome non-ATPase regulatory subunit 12 (26S proteasome
            regulatory subunit p55)
 gi|7451897|pir||JC6523 26S proteasome regulatory complex chain p55 - human
 gi|1945611|dbj|BAA19749.1| 26S proteasome subunit p55 [Homo sapiens]
 gi|17512153|gb|AAH19062.1|AAH19062 proteasome (prosome, macropain) 26S subunit, non-ATPase, 12 [Homo
            sapiens]
          Length = 456

 Score =  356 bits (913), Expect = 5e-97
 Identities = 178/445 (40%), Positives = 284/445 (63%), Gaps = 8/445 (1%)
 Frame = +1

Query: 19   IKADKDYSQILKEEFPKIDSLAQND-CNSALDQLLVLEKKTRQASDLASSKEVLAKIVDL 195
            +K + DYS  + +  P+   LA+       ++ LL LEK+TR ASD+ S+  +L  +V +
Sbjct: 14   VKMEVDYSATVDQRLPECAKLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKM 73

Query: 196  LASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVV 375
                 +WD LNE + LLSK+  QLK ++  M+Q+   Y++  +  DL  ++ +I+T+R+V
Sbjct: 74   CYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVE--EITDLPIKLRLIDTLRMV 131

Query: 376  TENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 555
            TE KI+VE+ERAR+TK L  IK++ G + EAA IL ELQVETYGSME  E+++FILEQM 
Sbjct: 132  TEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMR 191

Query: 556  LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 735
            L +   DY +  ++S+KI  K F+    E LKL+YYNL++++  H+  YL + ++ + IY
Sbjct: 192  LCLAVKDYIRTQIISKKINTKFFQEENTEKLKLKYYNLMIQLDQHEGSYLSICKHYRAIY 251

Query: 736  QTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTT 915
             T  I+++  KW+  L  +V +++L+P+ N Q+DL+H+I  D  L+++   + L+KLFTT
Sbjct: 252  DTPCIQAESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTT 311

Query: 916  NELMRWPIVQKTYEPVLNEDDL------AFGG-EANKHHWEDLQKRVIEHNLRVISEYYS 1074
             ELMRW  + + Y   L +  L       FG  E  +  W+DL+ RV+EHN+R++++YY+
Sbjct: 312  MELMRWSTLVEDYGMELRKGSLESPATDVFGSTEEGEKRWKDLKNRVVEHNIRIMAKYYT 371

Query: 1075 RITXXXXXXXXXXTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHN 1254
            RIT          +  ++E ++S+LV    I+AKV+R A I+NF++PK+ + LLN+WS  
Sbjct: 372  RITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQK 431

Query: 1255 VDELLEHIETIGHLITKEEIMHGLQ 1329
            ++ L+  +    HLI KEE++H LQ
Sbjct: 432  LNSLMSLVNKTTHLIAKEEMIHNLQ 456


>gi|27924244|gb|AAH45091.1| Similar to proteasome (prosome, macropain) 26S subunit, non-ATPase,
            12 [Xenopus laevis]
          Length = 468

 Score =  352 bits (902), Expect = 1e-95
 Identities = 177/445 (39%), Positives = 278/445 (62%), Gaps = 8/445 (1%)
 Frame = +1

Query: 19   IKADKDYSQILKEEFPKIDSLA-QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDL 195
            +K + DYS  + +  P+ + +A +      ++ LL LEK+TR ASD+ S+  +L  +V +
Sbjct: 26   VKMEVDYSSTVDQRLPECERMAGEGRLQEVIEILLSLEKQTRTASDMVSTSRILVAVVKM 85

Query: 196  LASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVV 375
                 +WD LNE + LLSK+  QLK ++  M+Q+  +Y++  +  DL  ++ +I+T+R V
Sbjct: 86   CYEAKEWDLLNENIMLLSKRRSQLKQAVTKMVQQCCQYVE--EITDLPIKLHLIDTLRTV 143

Query: 376  TENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 555
            TE KI+VE+ERAR+TK L  IK++ G + EAA IL ELQVETYGSM   EK++FILEQM 
Sbjct: 144  TEGKIYVEIERARLTKTLAAIKEQSGDVKEAASILQELQVETYGSMVKKEKVEFILEQMR 203

Query: 556  LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 735
            L +   D+ +  ++S+KI  K F+    E  KL YYNL++++  H+  YL + ++ + IY
Sbjct: 204  LCLAVKDFIRTQIISKKINTKFFQEENTEKSKLNYYNLMIQVDQHEGSYLSICKHYRAIY 263

Query: 736  QTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTT 915
             T  I ++  KW+  L  +V +++LSPY N Q+DL+H+I  D  L+ +   + L+KLFTT
Sbjct: 264  DTPCILAESDKWQHALKSVVLYVILSPYDNEQSDLVHRISTDKKLEDIPKYKDLLKLFTT 323

Query: 916  NELMRWPIVQKTYEPVLNE-------DDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYS 1074
             ELMRW  + + Y   L E        D+    E  +  W+DL+ RV+EHN+R++++YY+
Sbjct: 324  MELMRWSTLVEDYGKELREGSLDSTATDVFSYSEEGEKRWKDLKNRVVEHNIRIMAKYYT 383

Query: 1075 RITXXXXXXXXXXTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHN 1254
            RIT          +  ++E ++S LV    IYAKV+R A I+NF++PK+ + LLN+WS  
Sbjct: 384  RITMKRMAQLLDLSIDESEEFLSSLVVNKTIYAKVDRLAGIINFQRPKDPNDLLNDWSQK 443

Query: 1255 VDELLEHIETIGHLITKEEIMHGLQ 1329
            ++ L+  +    HLI KEE++H LQ
Sbjct: 444  LNSLMSLVNKTTHLIAKEEMIHNLQ 468


>gi|20978555|sp|Q9D8W5|PSDC_MOUSE 26S proteasome non-ATPase regulatory subunit 12 (26S proteasome
            regulatory subunit p55)
 gi|12841273|dbj|BAB25140.1| unnamed protein product [Mus musculus]
          Length = 456

 Score =  350 bits (897), Expect = 4e-95
 Identities = 172/445 (38%), Positives = 284/445 (63%), Gaps = 8/445 (1%)
 Frame = +1

Query: 19   IKADKDYSQILKEEFPKIDSLAQND-CNSALDQLLVLEKKTRQASDLASSKEVLAKIVDL 195
            +K + DYS  + +  P+ + LA+       ++ LL LEK+TR ASD+ S+  +L  +V +
Sbjct: 14   VKMEVDYSATVDQRLPECEKLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKM 73

Query: 196  LASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVV 375
                 +WD  NE + LLSK+  QLK ++  M+Q+   Y++  +  DL  ++ +I+T+R+V
Sbjct: 74   CYEAKEWDLHNENIMLLSKRRSQLKQAVAKMVQQCCTYVE--EITDLPVKLRLIDTLRMV 131

Query: 376  TENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 555
            TE KI+VE+ERAR+TK L  IK++ G + EAA IL ELQVETYGSME  E+++FILEQM 
Sbjct: 132  TEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMR 191

Query: 556  LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 735
            L +   DY +  ++S+KI  K  +    E++KL+YYNL++++  H+  YL + ++ + IY
Sbjct: 192  LCLAVKDYIRTQIISKKINTKFSQEENTENMKLKYYNLMIQLDQHEGSYLSICKHYRAIY 251

Query: 736  QTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTT 915
             T  I+++  KW+  L  +V +++L+P+ N Q+DL+H+I +D  L+++   + L+KLFTT
Sbjct: 252  DTPCIQAESDKWQQALKSVVLYVILAPFDNEQSDLVHRISSDKKLEEIPKYKDLLKLFTT 311

Query: 916  NELMRWPIVQKTYEPVLNE-------DDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYS 1074
             ELMRW  + + Y   L +        D+    E  +  W+DL+ RV+EHN+R++++YY+
Sbjct: 312  MELMRWSTLVEDYGVELRKGSSETPATDVFSSTEEGEKRWKDLKSRVVEHNIRIMAKYYT 371

Query: 1075 RITXXXXXXXXXXTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHN 1254
            RIT          +  ++E ++S+LV    I+AKV+R A ++NF++PK+ + LLN+WS  
Sbjct: 372  RITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGVINFQRPKDPNNLLNDWSQK 431

Query: 1255 VDELLEHIETIGHLITKEEIMHGLQ 1329
            ++ L+  +    HLI KEE++H LQ
Sbjct: 432  LNSLMSLVNKTTHLIAKEEMIHNLQ 456


>gi|28872765|ref|NP_777360.1| proteasome 26S non-ATPase subunit 12 isoform 2; 26S proteasome
            regulatory subunit p55 [Homo sapiens]
          Length = 436

 Score =  339 bits (870), Expect = 5e-92
 Identities = 169/420 (40%), Positives = 270/420 (64%), Gaps = 7/420 (1%)
 Frame = +1

Query: 91   DCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK 270
            D ++ +DQ L    K  +ASD+ S+  +L  +V +     +WD LNE + LLSK+  QLK
Sbjct: 19   DYSATVDQRLPECAKLAKASDMVSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLK 78

Query: 271  LSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEE 450
             ++  M+Q+   Y++  +  DL  ++ +I+T+R+VTE KI+VE+ERAR+TK L  IK++ 
Sbjct: 79   QAVAKMVQQCCTYVE--EITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQN 136

Query: 451  GKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN 630
            G + EAA IL ELQVETYGSME  E+++FILEQM L +   DY +  ++S+KI  K F+ 
Sbjct: 137  GDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQE 196

Query: 631  PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVL 810
               E LKL+YYNL++++  H+  YL + ++ + IY T  I+++  KW+  L  +V +++L
Sbjct: 197  ENTEKLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDTPCIQAESEKWQQALKSVVLYVIL 256

Query: 811  SPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDL--- 981
            +P+ N Q+DL+H+I  D  L+++   + L+KLFTT ELMRW  + + Y   L +  L   
Sbjct: 257  APFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELMRWSTLVEDYGMELRKGSLESP 316

Query: 982  ---AFGG-EANKHHWEDLQKRVIEHNLRVISEYYSRITXXXXXXXXXXTESQTETYISDL 1149
                FG  E  +  W+DL+ RV+EHN+R++++YY+RIT          +  ++E ++S+L
Sbjct: 317  ATDVFGSTEEGEKRWKDLKNRVVEHNIRIMAKYYTRITMKRMAQLLDLSVDESEAFLSNL 376

Query: 1150 VNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVDELLEHIETIGHLITKEEIMHGLQ 1329
            V    I+AKV+R A I+NF++PK+ + LLN+WS  ++ L+  +    HLI KEE++H LQ
Sbjct: 377  VVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIAKEEMIHNLQ 436


>gi|27573351|gb|AAO20069.1| putative proteasome regulatory non-ATPase subunit [Oryza sativa
            (japonica cultivar-group)]
          Length = 443

 Score =  296 bits (757), Expect = 6e-79
 Identities = 161/431 (37%), Positives = 260/431 (60%), Gaps = 23/431 (5%)
 Frame = +1

Query: 97   NSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS 276
            ++A++ LL +EK+ R A D+A +++    IV+L      W  LN+Q+ +LSK+ GQLK +
Sbjct: 9    DAAIESLLNVEKQMRLAGDVAGTRKAAIDIVELCYKAGAWKTLNDQIVVLSKRRGQLKQA 68

Query: 277  IQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGK 456
            I  M+QK MEY+  +   D++TRI +I+T+  V+  KI+VE+ERAR+ K L +IK+E+G+
Sbjct: 69   ITAMVQKAMEYIDLTP--DMDTRIELIKTLSSVSAGKIYVEIERARLIKRLAKIKEEQGQ 126

Query: 457  IDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTF---- 624
            IDEAAD++ E+ VET+GSM  +EKI FILEQ+ L + + DY +A +LSRKI  + F    
Sbjct: 127  IDEAADLMQEVAVETFGSMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADP 186

Query: 625  ----KNPKYES---------------LKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDA 747
                K PK                  LK  YY L+++   H  +YLE+ +  + IY+  +
Sbjct: 187  SKEKKKPKEGDNIVQEAPAEIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKSIYEIPS 246

Query: 748  IKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELM 927
            IK D +KW PVL  I ++LVL+P+  +Q+ L++    D NL ++ +   L+K   T E++
Sbjct: 247  IKEDPSKWIPVLRKICWYLVLAPHDPMQSSLLNATLEDKNLSEIPNFRLLLKQLVTMEVI 306

Query: 928  RWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITXXXXXXXX 1107
            +W  + + ++     +    GG       EDL+ R+IEHN+ V+S+YYSRIT        
Sbjct: 307  QWTSLWEFFKDEYANEKNFLGGALGDKAAEDLKLRIIEHNILVVSKYYSRITLKRLADLL 366

Query: 1108 XXTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVDELLEHIETI 1287
              +  + E ++SD+VN   + AK++RP  +V F   ++S+ +LN W+ N+++LL+ +E  
Sbjct: 367  CLSLQEAEKHLSDMVNSKSLIAKIDRPMGVVCFRTAQDSNGILNSWAANLEKLLDLVEKS 426

Query: 1288 GHLITKEEIMH 1320
             H I KE ++H
Sbjct: 427  CHQIHKETMIH 437


>gi|21299679|gb|EAA11824.1| agCP6544 [Anopheles gambiae str. PEST]
          Length = 491

 Score =  293 bits (750), Expect = 4e-78
 Identities = 157/440 (35%), Positives = 267/440 (60%), Gaps = 4/440 (0%)
 Frame = +1

Query: 19   IKADKDYSQILKEEFPKIDSLA--QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVD 192
            +K + DYS    E+ P    +A  +N  N AL+ LL LEK+TR  +D+ SS  VL  IV 
Sbjct: 43   VKMEVDYSATCDEKIPLCKEMAKDENKFNEALEILLQLEKQTRIGADMVSSARVLIAIVQ 102

Query: 193  LLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRV 372
            +      W+ LNE +T+L K+  Q K ++  MIQ+   Y+  +   D  T++ +I+T+R 
Sbjct: 103  ICFEARNWNYLNEYVTILVKRRSQSKQAVAKMIQECCTYVDQTP--DKETKLKLIDTLRT 160

Query: 373  VTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQM 552
            VTE KI+VEVERAR+TK L +I++ +G +  AA I+ ELQVETYG+M+  EK++ ILEQM
Sbjct: 161  VTEGKIYVEVERARLTKMLADIREADGDVTGAATIMEELQVETYGTMDKREKVELILEQM 220

Query: 553  ELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 732
             L + K D+ +  ++++KI  K F + + + LKL+YY+L++++      +++ +++   +
Sbjct: 221  RLCLAKQDFVRTQIIAKKINIKFFNDAEQQDLKLKYYDLMIRLD-KDSSFIKTSRHYLAV 279

Query: 733  YQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFT 912
              +D I  +  + + ++ + V + +LSPY N Q D++H +  +  L++L   + L++LF 
Sbjct: 280  VDSDMIAQETERRQKMMIYAVLYCILSPYDNEQVDMMHNLSKNKLLEELPVYKELLRLFM 339

Query: 913  TNELMRWPIVQKTYEPVLNEDDLAFGGEAN--KHHWEDLQKRVIEHNLRVISEYYSRITX 1086
              EL+ +  +   Y   LN  D+ F  E +  K  W +L+ R+IEHN+R+IS YY+RI  
Sbjct: 340  CKELINFDALCTVYGAELNTFDI-FNQETSHGKKCWAELKNRLIEHNVRIISNYYTRINL 398

Query: 1087 XXXXXXXXXTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVDEL 1266
                     +E + E Y+S +VN G +  K +RPA I++F + K++S++LN+W+  ++EL
Sbjct: 399  KRMAELLDLSEGECEEYLSRMVNAGTLKVKTDRPAGIIHFSQKKSASEVLNDWAFGLNEL 458

Query: 1267 LEHIETIGHLITKEEIMHGL 1326
            +  +    HLI KEE ++ +
Sbjct: 459  MNLVNKTCHLINKEECINNV 478


>gi|15242545|ref|NP_196552.1| 26S proteasome regulatory subunit (RPN5), putative; protein id:
            At5g09900.1, supported by cDNA: gi_14334433 [Arabidopsis
            thaliana]
 gi|9758968|dbj|BAB09411.1| 26S proteasome p55 protein-like [Arabidopsis thaliana]
 gi|14334434|gb|AAK59415.1| putative 26S proteasome p55 protein [Arabidopsis thaliana]
 gi|21280811|gb|AAM44954.1| putative 26S proteasome p55 protein [Arabidopsis thaliana]
          Length = 442

 Score =  286 bits (731), Expect = 7e-76
 Identities = 156/430 (36%), Positives = 256/430 (59%), Gaps = 23/430 (5%)
 Frame = +1

Query: 100  SALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSI 279
            + +D+LL  EK+ R A ++A +++   +I+ L      W  LNEQ+  LSKK GQLK ++
Sbjct: 9    ATIDRLLNEEKQMRLAENVAGTRKAATEILQLCFDAKDWKLLNEQILNLSKKRGQLKQAV 68

Query: 280  QYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKI 459
            Q M+Q+ M+Y+  +   D+ TRI +I+T+  V+  KI+VE+ERAR+TK L +IK+E+G+I
Sbjct: 69   QSMVQQAMQYIDQTP--DIETRIELIKTLNNVSAGKIYVEIERARLTKKLAKIKEEQGQI 126

Query: 460  DEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKI--------LK 615
             EAAD++ E+ VET+G+M  +EKI FILEQ+ L + + D+ +A +LSRKI         K
Sbjct: 127  AEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDFVRAQILSRKINPRVFDADTK 186

Query: 616  KTFKNPKYES---------------LKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI 750
            K  K PK                  LK  YY L+++   H  EY+E+ +  + IY   ++
Sbjct: 187  KDKKKPKEGDNMVEEAPADIPTLLELKRIYYELMIRYYSHNNEYIEICRSYKAIYDIPSV 246

Query: 751  KSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMR 930
            K    +W PVL  I +FLVL+P+  +Q+ L++    D NL ++   + L+K   T E+++
Sbjct: 247  KETPEQWIPVLRKICWFLVLAPHDPMQSSLLNATLEDKNLSEIPDFKMLLKQVVTMEVIQ 306

Query: 931  WPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITXXXXXXXXX 1110
            W  +   Y+    ++    GG       EDL+ R+IEHN+ V+S+YY+RIT         
Sbjct: 307  WTSLWNKYKDEFEKEKSMIGGSLGDKAGEDLKLRIIEHNILVVSKYYARITLKRLAELLC 366

Query: 1111 XTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVDELLEHIETIG 1290
             +  + E ++S++V    + AK++RP+ IV F+  K+S+++LN W+ N+++LL+ +E   
Sbjct: 367  LSMEEAEKHLSEMVVSKALIAKIDRPSGIVCFQIAKDSNEILNSWAGNLEKLLDLVEKSC 426

Query: 1291 HLITKEEIMH 1320
            H I KE ++H
Sbjct: 427  HQIHKETMVH 436


>gi|10177207|dbj|BAB10309.1| proteasome regulatory subunit-like [Arabidopsis thaliana]
          Length = 529

 Score =  285 bits (730), Expect = 9e-76
 Identities = 156/430 (36%), Positives = 255/430 (59%), Gaps = 23/430 (5%)
 Frame = +1

Query: 100  SALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSI 279
            S++D+LL  EK+ R A ++A +++   +I+ L      W  LNEQ+  LSKK GQLK ++
Sbjct: 96   SSIDRLLNEEKQMRLAENVAGTRKAATEILKLCFEAKDWKLLNEQILNLSKKRGQLKQAV 155

Query: 280  QYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKI 459
            Q M+Q+ M+Y+   ++LD+ TRI +I+T+  V   KI+VE+ERAR+TK L +IK+E+G I
Sbjct: 156  QSMVQQAMQYI--DQTLDIETRIELIKTLNNVAAGKIYVEIERARLTKMLAKIKEEQGLI 213

Query: 460  DEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTF----- 624
             EAAD++ E+ VET+G+M  +EKI FILEQ+ L + + D+ +A +LSRKI  + F     
Sbjct: 214  AEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDQKDFVRAQILSRKINPRVFDADTT 273

Query: 625  ---KNPKYES---------------LKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI 750
               K PK                  LK  YY L+++   H  EY+E+ +  + IY   ++
Sbjct: 274  KEKKKPKEGENMVEEAPADIPTLLVLKRIYYELMIRYYSHNNEYIEICRSYKAIYDIPSV 333

Query: 751  KSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMR 930
            K +  +W PVL  I +FL L+P+  +Q+ L++    D  L ++   + L+K   T E+++
Sbjct: 334  KENPEQWIPVLRKICWFLALAPHDPMQSSLLNATLEDKKLSEIPDFKMLLKQIVTMEVIQ 393

Query: 931  WPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITXXXXXXXXX 1110
            W  +   Y+     +    GG       EDL+ R+IEHN+ V+S+YYSRIT         
Sbjct: 394  WTSLWNKYKDEFENEKNMIGGSLGDKAGEDLKLRIIEHNILVVSKYYSRITFKRLAELLC 453

Query: 1111 XTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVDELLEHIETIG 1290
             T  + E ++S++V    + AK++RP+ I+ F+  K+S+++LN W+ N+++LL+ +E   
Sbjct: 454  LTTEEAEKHLSEMVVSKALIAKIDRPSGIICFQIVKDSNEILNSWATNLEKLLDLVEKSC 513

Query: 1291 HLITKEEIMH 1320
            H I KE ++H
Sbjct: 514  HQIHKETMVH 523


>gi|18424863|ref|NP_568994.1| 26S proteasome regulatory subunit (RPN5), putative; protein id:
            At5g64760.1 [Arabidopsis thaliana]
          Length = 442

 Score =  285 bits (730), Expect = 9e-76
 Identities = 156/430 (36%), Positives = 255/430 (59%), Gaps = 23/430 (5%)
 Frame = +1

Query: 100  SALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSI 279
            S++D+LL  EK+ R A ++A +++   +I+ L      W  LNEQ+  LSKK GQLK ++
Sbjct: 9    SSIDRLLNEEKQMRLAENVAGTRKAATEILKLCFEAKDWKLLNEQILNLSKKRGQLKQAV 68

Query: 280  QYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKI 459
            Q M+Q+ M+Y+   ++LD+ TRI +I+T+  V   KI+VE+ERAR+TK L +IK+E+G I
Sbjct: 69   QSMVQQAMQYI--DQTLDIETRIELIKTLNNVAAGKIYVEIERARLTKMLAKIKEEQGLI 126

Query: 460  DEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTF----- 624
             EAAD++ E+ VET+G+M  +EKI FILEQ+ L + + D+ +A +LSRKI  + F     
Sbjct: 127  AEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDQKDFVRAQILSRKINPRVFDADTT 186

Query: 625  ---KNPKYES---------------LKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI 750
               K PK                  LK  YY L+++   H  EY+E+ +  + IY   ++
Sbjct: 187  KEKKKPKEGENMVEEAPADIPTLLVLKRIYYELMIRYYSHNNEYIEICRSYKAIYDIPSV 246

Query: 751  KSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMR 930
            K +  +W PVL  I +FL L+P+  +Q+ L++    D  L ++   + L+K   T E+++
Sbjct: 247  KENPEQWIPVLRKICWFLALAPHDPMQSSLLNATLEDKKLSEIPDFKMLLKQIVTMEVIQ 306

Query: 931  WPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITXXXXXXXXX 1110
            W  +   Y+     +    GG       EDL+ R+IEHN+ V+S+YYSRIT         
Sbjct: 307  WTSLWNKYKDEFENEKNMIGGSLGDKAGEDLKLRIIEHNILVVSKYYSRITFKRLAELLC 366

Query: 1111 XTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVDELLEHIETIG 1290
             T  + E ++S++V    + AK++RP+ I+ F+  K+S+++LN W+ N+++LL+ +E   
Sbjct: 367  LTTEEAEKHLSEMVVSKALIAKIDRPSGIICFQIVKDSNEILNSWATNLEKLLDLVEKSC 426

Query: 1291 HLITKEEIMH 1320
            H I KE ++H
Sbjct: 427  HQIHKETMVH 436


>gi|17063181|gb|AAL32985.1| AT5g64760/MVP7_9 [Arabidopsis thaliana]
 gi|17063193|gb|AAL32972.1| AT5g64760/MVP7_9 [Arabidopsis thaliana]
 gi|21700915|gb|AAM70581.1| AT5g64760/MVP7_9 [Arabidopsis thaliana]
          Length = 442

 Score =  285 bits (730), Expect = 9e-76
 Identities = 156/430 (36%), Positives = 255/430 (59%), Gaps = 23/430 (5%)
 Frame = +1

Query: 100  SALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSI 279
            S++D+LL  EK+ R A ++A +++   +I+ L      W  LNEQ+  LSKK GQLK ++
Sbjct: 9    SSIDRLLNEEKQMRLAENVAGTRKAATEILKLCFEAKDWKLLNEQILNLSKKRGQLKQAV 68

Query: 280  QYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKI 459
            Q M+Q+ M+Y+   ++LD+ TRI +I+T+  V   KI+VE+ERAR+TK L +IK+E+G I
Sbjct: 69   QSMVQQAMQYI--DQTLDIETRIELIKTLNNVAAGKIYVEIERARLTKMLAKIKEEQGLI 126

Query: 460  DEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTF----- 624
             EAAD++ E+ VET+G+M  +EKI FILEQ+ L + + D+ +A +LSRKI  + F     
Sbjct: 127  AEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDQKDFVRAQILSRKINPRVFDADTT 186

Query: 625  ---KNPKYES---------------LKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI 750
               K PK                  LK  YY L+++   H  EY+E+ +  + IY   ++
Sbjct: 187  KEKKKPKEGENMVEEAPADIPTLLVLKRIYYELMIRYYSHNNEYIEICRSYKAIYDIPSV 246

Query: 751  KSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMR 930
            K +  +W PVL  I +FL L+P+  +Q+ L++    D  L ++   + L+K   T E+++
Sbjct: 247  KENPEQWIPVLRKICWFLALAPHDPMQSSLLNATLEDKKLSEIPDFKMLLKQIVTMEVIQ 306

Query: 931  WPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITXXXXXXXXX 1110
            W  +   Y+     +    GG       EDL+ R+IEHN+ V+S+YYSRIT         
Sbjct: 307  WTSLWNKYKDEFENEKNMIGGSLGDKAGEDLKLRIIEHNILVVSKYYSRITFKRLAELLC 366

Query: 1111 XTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVDELLEHIETIG 1290
             T  + E ++S++V    + AK++RP+ I+ F+  K+S+++LN W+ N+++LL+ +E   
Sbjct: 367  LTTEEAEKHLSEMVVSKALIAKIDRPSGIICFQIVKDSNEILNSWATNLEKLLDLVEKSC 426

Query: 1291 HLITKEEIMH 1320
            H I KE ++H
Sbjct: 427  HQIHKETMVH 436


>gi|17533097|ref|NP_494835.1| Proteasome Regulatory Particle, Non-ATPase-like RPN-5 (56.5 kD)
            (rpn-5) [Caenorhabditis elegans]
 gi|25332503|pir||F88130 protein F10G7.8 [imported] - Caenorhabditis elegans
 gi|1055157|gb|AAA81126.1| Proteasome regulatory particle, non-atpase-like protein 5
            [Caenorhabditis elegans]
          Length = 490

 Score =  278 bits (710), Expect = 2e-73
 Identities = 162/446 (36%), Positives = 267/446 (59%), Gaps = 13/446 (2%)
 Frame = +1

Query: 22   KADKDYSQILKEEFPKIDSLAQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLA 201
            K ++DYS+ + E   K   +AQ D  +A++ L  +EK TR  +D+ S+  V+  +  L  
Sbjct: 38   KMEQDYSKQVDEALLKARDIAQKDAVAAVESLNNIEKLTRLGADMKSNTRVVQYMTKLCF 97

Query: 202  SRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTE 381
               KWD L E +  LSKK   +K++I  M++  +  +    + DL  ++ +IET+R VT 
Sbjct: 98   EGQKWDLLMETIMTLSKKRLLIKMAIAKMVRDAVAMIDKMPTEDL--KMKLIETLRTVTA 155

Query: 382  NKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 561
             KI+VEVERAR+T  +V+  + EGK+DEAA +L ELQVETYGSMEM EK+Q++LEQM  S
Sbjct: 156  GKIYVEVERARLTSMVVKKLEREGKLDEAATMLLELQVETYGSMEMREKVQYLLEQMRYS 215

Query: 562  ILKGDYSQATVLSRKILKKTFK---NPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 732
            +++ D+ +AT++S+KI  K F      + ++LKL+YY+ +++I LH   YL+V ++ +EI
Sbjct: 216  LVRNDFVRATIISKKINIKFFNKSDEDEVQNLKLKYYDSMIRIGLHDGNYLDVCRHHREI 275

Query: 733  YQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFT 912
            Y+T  IK+D AK    L   + + +L+P+ N Q DL+++I     L+ +   + ++ LF 
Sbjct: 276  YETKKIKADSAKATSHLRSAIVYCLLAPHTNEQWDLLNRIAIQRELETVPDYKIILDLFI 335

Query: 913  TNELM--RWPIVQKTYEPVLN-------EDDLAFGGEANKHHWEDLQKRVIEHNLRVISE 1065
              EL+  +  IV K YE +L        +  +       +  W DL  RV EHN+R+I++
Sbjct: 336  NQELISFKGTIVAK-YEKLLRRGTTSSPDTGIFDKSTEGEKRWSDLHLRVGEHNMRMIAK 394

Query: 1066 YYSRITXXXXXXXXXXTESQTETYISDLVNQG-IIYAKVNRPAKIVNFEKPKNSSQLLNE 1242
            YY++IT             + E+++ +L+  G I  AK++RP++IVN    K + + L+ 
Sbjct: 395  YYTQITFERLAELLDFPVDEMESFVCNLIVTGQITGAKLHRPSRIVNLRLKKANVEQLDV 454

Query: 1243 WSHNVDELLEHIETIGHLITKEEIMH 1320
            W+ NV +L + +  + HLI KE+++H
Sbjct: 455  WASNVHKLTDTLNKVSHLILKEQMVH 480


>gi|21357319|ref|NP_649588.1| CG1100-PA [Drosophila melanogaster]
 gi|6434942|gb|AAF08383.1|AF145315_1 hypothetical 55kDa protein [Drosophila melanogaster]
 gi|7296672|gb|AAF51952.1| CG1100-PA [Drosophila melanogaster]
 gi|16197849|gb|AAL13568.1| GH11341p [Drosophila melanogaster]
          Length = 502

 Score =  251 bits (641), Expect = 2e-65
 Identities = 153/489 (31%), Positives = 265/489 (54%), Gaps = 54/489 (11%)
 Frame = +1

Query: 22   KADKDYSQILKEEFPKIDSLAQNDCNS---ALDQLLVLEKKTRQASDLASSKEVLAKIVD 192
            K + DY     E+ P    LA+ + ++   A++ +L LEK+TR  +D+ S   VL  I  
Sbjct: 13   KMEVDYEPACNEKIPLAKELAKKNPDAFHEAIEMMLQLEKQTRLGADMVSCSRVLVAICQ 72

Query: 193  LLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRV 372
            +    + W+ LNE ++LL ++  QLK ++  MIQ+ + Y+   K+ D  T++ +I+T+R 
Sbjct: 73   ICFDASNWNALNEYVSLLVRRRSQLKQAVVKMIQECVTYV--DKTPDKETKLKLIDTLRS 130

Query: 373  VTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQM 552
            VTE KI+VE+ERAR+TK L +IK+ +G +  AA ++ ELQVETYGSM+  EK++ ILEQM
Sbjct: 131  VTEGKIYVEIERARLTKILADIKEADGDVAGAATVMEELQVETYGSMDKREKVELILEQM 190

Query: 553  ELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 732
             L +LK DY    ++++KI  K F +P    LKL++Y L+++++     +L  +++ Q I
Sbjct: 191  RLCLLKEDYVSTQIIAKKISIKFFDDPAQHDLKLKFYYLMIQLN-RDTSFLNTSRHYQAI 249

Query: 733  YQ-----------TDAIKSDEAKWK----------------------------------- 774
             +             A  +DE K K                                   
Sbjct: 250  AEPPRKKTGLTPVDSAASTDEQKKKDDDKKKKEEDDKDKKPEVATEAEVEIELTEEQKKE 309

Query: 775  --PVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQK 948
                L   V + VL+P+ N Q+D++  +  +  L+++ + + +++LF + EL+ +     
Sbjct: 310  LTEKLVCAVLYCVLAPFDNEQSDMMAHLSKNKKLEEVPAYKEILRLFMSKELINFDTFNA 369

Query: 949  TYEPVLNEDDLAFGGEANKHHWE---DLQKRVIEHNLRVISEYYSRITXXXXXXXXXXTE 1119
             +  VL E+++    ++ KH  +   +L+ R+IEHN+R+I+ YYSR+             
Sbjct: 370  DFGLVLAENEMF--KDSTKHGKKCITELKDRLIEHNIRIIAMYYSRLHLARMSELLNLPT 427

Query: 1120 SQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVDELLEHIETIGHLI 1299
            S+ E Y+S L N   I  K++RPA I+ F + K++S +LN W+ +V++L+  +    HLI
Sbjct: 428  SRCEEYLSKLANTDTIRVKIDRPAGIIYFTQKKSASDILNNWATDVNQLMSLVNKTCHLI 487

Query: 1300 TKEEIMHGL 1326
             KEE ++ +
Sbjct: 488  NKEECVYSV 496


>gi|23507978|ref|NP_700648.1| 26s proteasome subunit p55, putative [Plasmodium falciparum 3D7]
 gi|23495039|gb|AAN35372.1|AE014831_48 26s proteasome subunit p55, putative [Plasmodium falciparum 3D7]
          Length = 467

 Score =  240 bits (613), Expect = 3e-62
 Identities = 135/413 (32%), Positives = 243/413 (58%), Gaps = 3/413 (0%)
 Frame = +1

Query: 106  LDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQY 285
            +++L+ LEKK RQ+ D  S+ ++   I++       +  +NE L   +KK GQLK +I  
Sbjct: 49   VEELISLEKKCRQSYDGISTSKICCFILNKYKEVGNYSKVNEYLIFFNKKRGQLKRTIID 108

Query: 286  MIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDE 465
            +I     +++  ++ +   ++++I T+ +V+E KIFVEVER+ V + L +IK+E+G I+E
Sbjct: 109  II