MedBlast(0.8) Results

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Direct References:

References Summary:

1. Nisogi H, Kominami K, Tanaka K, Toh-e A
   A new essential gene of Saccharomyces cerevisiae, a defect in it may result in instability of nucleus.
   Exp Cell Res 1992 May;200(1):48-57
   PMID: 1563492
2. Kopetzki E, Entian KD, Mecke D
   Complete nucleotide sequence of the hexokinase PI gene (HXK1) of Saccharomyces cerevisiae.
   Gene 1985;39(1):95-101
   PMID: 3908224

Indirect References:

References Summary:

1. Kominami K, Toh-e A
   Characterization of the function of the NIN1 gene product of Saccharomyces cerevisiae.
   Exp Cell Res 1994 Apr;211(2):203-11
   PMID: 8143766
2. Kawamura M, Kominami K, Takeuchi J, Toh-e A
   A multicopy suppressor of nin1-1 of the yeast Saccharomyces cerevisiae is a counterpart of the Drosophila melanogaster diphenol oxidase A2 gene, Dox-A2.
   Mol Gen Genet 1996 May 23;251(2):146-52
   PMID: 8668124
3. Yokota K, Kagawa S, Shimizu Y, Akioka H, Tsurumi C, Noda C, Fujimuro M, Yokosawa H, Fujiwara T, Takahashi E, Ohba M, Yamasaki M, DeMartino GN, Slaughter CA, Toh-e A, Tanaka K
   CDNA cloning of p112, the largest regulatory subunit of the human 26s proteasome, and functional analysis of its yeast homologue, sen3p.
   Mol Biol Cell 1996 Jun;7(6):853-70
   PMID: 8816993
4. Kominami K, Okura N, Kawamura M, DeMartino GN, Slaughter CA, Shimbara N, Chung CH, Fujimuro M, Yokosawa H, Shimizu Y, Tanahashi N, Tanaka K, Toh-e A
   Yeast counterparts of subunits S5a and p58 (S3) of the human 26S proteasome are encoded by two multicopy suppressors of nin1-1.
   Mol Biol Cell 1997 Jan;8(1):171-87
   PMID: 9017604
5. Bailly E, Reed SI
   Functional characterization of rpn3 uncovers a distinct 19S proteasomal subunit requirement for ubiquitin-dependent proteolysis of cell cycle regulatory proteins in budding yeast.
   Mol Cell Biol 1999 Oct;19(10):6872-90
   PMID: 10490625
6. Eki T, Naitou M, Hagiwara H, Ozawa M, Sasanuma SI, Sasanuma M, Tsuchiya Y, Shibata T, Hanaoka F, Murakami Y
   Analysis of a 36.2 kb DNA sequence including the right telomere of chromosome VI from Saccharomyces cerevisiae.
   Yeast 1996 Feb;12(2):149-67
   PMID: 8686379
7. Takeuchi J, Toh-e A
   Genetic evidence for interaction between components of the yeast 26S proteasome: combination of a mutation in RPN12 (a lid component gene) with mutations in RPT1 (an ATPase gene) causes synthetic lethality.
   Mol Gen Genet 1999 Aug;262(1):145-53
   PMID: 10503546
8. Fujimuro M, Tanaka K, Yokosawa H, Toh-e A
   Son1p is a component of the 26S proteasome of the yeast Saccharomyces cerevisiae.
   FEBS Lett 1998 Feb 20;423(2):149-54
   PMID: 9512348
9. Kominami K, DeMartino GN, Moomaw CR, Slaughter CA, Shimbara N, Fujimuro M, Yokosawa H, Hisamatsu H, Tanahashi N, Shimizu Y, et al
   Nin1p, a regulatory subunit of the 26S proteasome, is necessary for activation of Cdc28p kinase of Saccharomyces cerevisiae.
   EMBO J 1995 Jul 3;14(13):3105-15
   PMID: 7621825
10. Glickman MH, Rubin DM, Fried VA, Finley D
    The regulatory particle of the Saccharomyces cerevisiae proteasome.
    Mol Cell Biol 1998 Jun;18(6):3149-62
    PMID: 9584156
11. Tone Y, Tanahashi N, Tanaka K, Fujimuro M, Yokosawa H, Toh-e A
    Nob1p, a new essential protein, associates with the 26S proteasome of growing saccharomyces cerevisiae cells.
    Gene 2000 Feb 8;243(1-2):37-45
    PMID: 10675611
12. Wilkinson CR, Ferrell K, Penney M, Wallace M, Dubiel W, Gordon C
    Analysis of a gene encoding Rpn10 of the fission yeast proteasome reveals that the polyubiquitin-binding site of this subunit is essential when Rpn12/Mts3 activity is compromised.
    J Biol Chem 2000 May 19;275(20):15182-92
    PMID: 10809753
13. Kuwano H, Masuda N, Kato H, Sugimachi K
    The subepithelial extension of esophageal carcinoma for determining the resection margin during esophagectomy: a serial histopathologic investigation.
    Surgery 2002 Jan;131(1 Suppl):S14-21
    PMID: 11821782
14. Bellantone R, Lombardi CP, Raffaelli M, Boscherini M, De Crea C, Alesina PF, Traini E, Princi P
    [Conventional surgery versus laparoscopic surgery. Adrenal pathology]
    Suppl Tumori 2002 May-Jun;1(3):S14-8
    PMID: 12415779
15. Yao Y, Hausding M, Erkel G, Anke T, Forstermann U, Kleinert H
    Sporogen, S14-95, and S-curvularin, three inhibitors of human inducible nitric-oxide synthase expression isolated from fungi.
    Mol Pharmacol 2003 Feb;63(2):383-91
    PMID: 12527810
16. White JR Jr
    Economic considerations in treating patients with type 2 diabetes mellitus.
    Am J Health Syst Pharm 2002 Dec 1;59 Suppl 9:S14-7
    PMID: 12489382
17. Schror K
    The pharmacology of cilostazol.
    Diabetes Obes Metab 2002 Mar;4 Suppl 2:S14-9
    PMID: 12180353
18. Soparkar PM, Rustogi KN, Petrone ME, Volpe AR
    Comparison of gingivitis and plaque efficacy of a battery-powered toothbrush and an ADA-provided manual toothbrush.
    Compend Contin Educ Dent Suppl 2000;(31):S14-8; quiz S34
    PMID: 11908370
19. Barbiero VK, Kathuria A
    Research priorities child and maternal nutrition: a USAID perspective.
    Nutr Rev 2002 May;60(5 Pt 2):S14-8
    PMID: 12035852
20. Maillefert JF
    [Index of hip prosthesis in coxarthrosis]
    Rev Prat 2002 Mar 1;52(5 Suppl):S14-6
    PMID: 11949492
21. Backonja MM
    Use of anticonvulsants for treatment of neuropathic pain.
    Neurology 2002 Sep 10;59(5 Suppl 2):S14-7
    PMID: 12221151
22. Wakefield AJ
    The gut-brain axis in childhood developmental disorders.
    J Pediatr Gastroenterol Nutr 2002 May-Jun;34 Suppl 1:S14-7
    PMID: 12082381
23. Calder PC, Grimble RF
    Polyunsaturated fatty acids, inflammation and immunity.
    Eur J Clin Nutr 2002 Aug;56 Suppl 3:S14-9
    PMID: 12142955
24. Druker BJ
    STI571 (Gleevec) as a paradigm for cancer therapy.
    Trends Mol Med 2002;8(4 Suppl):S14-8
    PMID: 11927282
25. Brunner N, Double J, Fichtner I, Gescher A, Newell D, Oosterhuis W, Price P
    The EORTC Laboratory Research Division. European Organisation for Research and Treatment of Cancer.
    Eur J Cancer 2002 Mar;38 Suppl 4:S14-8
    PMID: 11858958
26. Ghilardi C, Bani MR, Giavazzi R
    Anticancer therapy with angiogenesis inhibitors.
    Tumori 2001 Nov-Dec;87(6):S14-6
    PMID: 11989610
27. Poss SD
    Using a new condensable composite for posterior restorations.
    Compend Contin Educ Dent Suppl 1999;(23):S14-8
    PMID: 12089754
28. Sturmberg JP, Reid A, Khadra MH
    Community based medical education in a rural area: a new direction in undergraduate training.
    Aust J Rural Health 2001 Dec;9 Suppl 1:S14-8
    PMID: 11998270
29. Lucas LK, Lipman AG
    Recent advances in pharmacotherapy for cancer pain management.
    Cancer Pract 2002 May-Jun;10 Suppl 1:S14-20
    PMID: 12027964
30. Warren J
    Show me the donors! Failed efforts by mass media to increase donation signal time for bold new initiatives.
    Nephrol News Issues 2001 May;Suppl:S14, S22
    PMID: 12108990
31. Swiontkowski MF
    Why we should collect outcomes data.
    J Bone Joint Surg Am 2003;85-A Suppl 1:S14-5
    PMID: 12540664
32. Liu ET
    General keynote: expression profiling and the study of ovarian cancer.
    Gynecol Oncol 2003 Jan;88(1 Pt 2):S14-5; discussion S22-4
    PMID: 12586078
33. Winston RM, Hardy K
    Are we ignoring potential dangers of in vitro fertilization and related treatments?
    Nat Cell Biol 2002 Oct;4 Suppl:s14-8
    PMID: 12479609
34. Alam T, Sollinger HW
    Glucose-regulated insulin production in hepatocytes.
    Transplantation 2002 Dec 27;74(12):1781-7
    PMID: 12499898
35. Carcoforo P, Soliani G, Bergossi L, Basaglia E, Virgili AR, Pagani W, Pozza E, Feggi LM
    Reliability and accuracy of sentinel node biopsy in cutaneous malignant melanoma.
    Tumori 2002 May-Jun;88(3):S14-6
    PMID: 12365371
36. Jagger MP, Huo Z, Riches PG
    Inflammatory cytokine (interleukin 6 and tumour necrosis factor alpha) release in a human whole blood system in response to Streptococcus pneumoniae serotype 14 and its capsular polysaccharide.
    Clin Exp Immunol 2002 Dec;130(3):467-74
    PMID: 12452837
37. Ziglam HM, Finch RG
    Penicillin-resistant pneumococci-implications for management of community-acquired pneumonia and meningitis.
    Int J Infect Dis 2002 Mar;6 Suppl 1:S14-20
    PMID: 12044285
38. Sutton R
    How and when to pace in vasovagal syncope.
    J Cardiovasc Electrophysiol 2002 Jan;13(1 Suppl):S14-6
    PMID: 11843461
39. Bailey SR
    Past and present attempts to prevent radiocontrast nephropathy.
    Rev Cardiovasc Med 2001;2 Suppl 1:S14-8
    PMID: 12439363
40. Zweifler RM
    Membrane stabilizer: citicoline.
    Curr Med Res Opin 2002;18 Suppl 2:s14-7
    PMID: 12365823
41. Gut A
    [Research of minor neurological signs]
    Encephale 2002 May-Jun;28 Spec No 1 Pt 2:S14-5
    PMID: 12486884
42. Attie F
    [Interatrial communication in patients over 40 years of age]
    Arch Cardiol Mex 2002 Jan-Mar;72 Suppl 1:S14-7
    PMID: 12001833
43. De Marco P, Calevo MG, Moroni A, Arata L, Merello E, Cama A, Finnell RH, Andreussi L, Capra V
    Polymorphisms in genes involved in folate metabolism as risk factors for NTDs.
    Eur J Pediatr Surg 2001 Dec;11 Suppl 1:S14-7
    PMID: 11813127
44. Daly MG, Willcock SM
    Examining stress and responses to stress in medical students and new medical graduates.
    Med J Aust 2002 Jul 1;177 Suppl:S14-5
    PMID: 12088494
45. Bou-Abdallah F, Arosio P, Santambrogio P, Yang X, Janus-Chandler C, Chasteen ND
    Ferrous ion binding to recombinant human H-chain ferritin. An isothermal titration calorimetry study.
    Biochemistry 2002 Sep 17;41(37):11184-91
    PMID: 12220183
46. Derrett S, Paul C, Herbison P, Williams H
    Evaluation of explicit prioritisation for elective surgery: a prospective study.
    J Health Serv Res Policy 2002 Jul;7 Suppl 1:S14-22
    PMID: 12175430
47. Koprowski SP Jr, Barrett JS
    Data warehouse implementation with clinical pharmacokinetic/pharmacodynamic data.
    Int J Clin Pharmacol Ther 2002 Mar;40(3):S14-29
    PMID: 11911606
48. Strain EC
    Assessment and treatment of comorbid psychiatric disorders in opioid-dependent patients.
    Clin J Pain 2002 Jul-Aug;18(4 Suppl):S14-27
    PMID: 12479251
49. Tucker M, Reicks M
    Exercise as a gateway behavior for healthful eating among older adults: an exploratory study.
    J Nutr Educ Behav 2002 Mar-Apr;34 Suppl 1:S14-9
    PMID: 12047824
50. Bode BW, Sabbah HT, Gross TM, Fredrickson LP, Davidson PC
    Diabetes management in the new millennium using insulin pump therapy.
    Diabetes Metab Res Rev 2002 Jan-Feb;18 Suppl 1:S14-20
    PMID: 11921425
51. Berenguer M
    Natural history of recurrent hepatitis C.
    Liver Transpl 2002 Oct;8(10 Suppl 1):S14-8
    PMID: 12362293
52. Kirigia JM, Sambo LG, Agu VU, Lambo E
    How to develop an operational plan for health.
    East Afr Med J 2001 Mar;78(3 Suppl):S14-9
    PMID: 12002062
53. Sato T, Sekiguchi H, Kimura T, Nozaki D, Nakazawa K, Yano H, Takeoka H
    Gravity-dependent modulation of Ia afferent in human.
    J Gravit Physiol 1999 Jul;6(1):P31-2
    PMID: 11543015
54. Wreesmann VB, Ghossein RA, Patel SG, Harris CP, Schnaser EA, Shaha AR, Tuttle RM, Shah JP, Rao PH, Singh B
    Genome-wide appraisal of thyroid cancer progression.
    Am J Pathol 2002 Nov;161(5):1549-56
    PMID: 12414503
55. Masure S, Geerts H, Cik M, Hoefnagel E, Van Den Kieboom G, Tuytelaars A, Harris S, Lesage AS, Leysen JE, Van Der Helm L, Verhasselt P, Yon J, Gordon RD
    Enovin, a member of the glial cell-line-derived neurotrophic factor (GDNF) family with growth promoting activity on neuronal cells. Existence and tissue-specific expression of different splice variants.
    Eur J Biochem 1999 Dec;266(3):892-902
    PMID: 10583383
56. Di Lollo V, Enns JT, Yantis S, Dechief LG
    Response latencies to the onset and offset of visual stimuli.
    Percept Psychophys 2000 Jan;62(1):218-25
    PMID: 10703268
57. Decaussin G, Sbih-Lammali F, de Turenne-Tessier M, Bouguermouh A, Ooka T
    Expression of BARF1 gene encoded by Epstein-Barr virus in nasopharyngeal carcinoma biopsies.
    Cancer Res 2000 Oct 1;60(19):5584-8
    PMID: 11034107
58. Behnam-Motlagh P, Grankvist K, Henriksson R, Engstrom KG
    Response in shape and size of individual p31 cancer cells to cisplatin and ouabain: a computerized image analysis of cell halo characteristics during continuous perfusion.
    Cytometry 2000 Jul 1;40(3):198-208
    PMID: 10878562
59. Van Limbergen H, Poppe B, Michaux L, Herens C, Brown J, Noens L, Berneman Z, De Bock R, De Paepe A, Speleman F
    Identification of cytogenetic subclasses and recurring chromosomal aberrations in AML and MDS with complex karyotypes using M-FISH.
    Genes Chromosomes Cancer 2002 Jan;33(1):60-72
    PMID: 11746988
60. Convertino VA, Doerr DF, Vernikos J
    Altered baroreflex control of forearm vascular resistance during simulated microgravity.
    J Gravit Physiol 1994 May;1(1):P31-2
    PMID: 11538753
61. Edstrom E, Mahlamaki E, Nord B, Kjellman M, Karhu R, Hoog A, Goncharov N, Teh BT, Backdahl M, Larsson C
    Comparative genomic hybridization reveals frequent losses of chromosomes 1p and 3q in pheochromocytomas and abdominal paragangliomas, suggesting a common genetic etiology.
    Am J Pathol 2000 Feb;156(2):651-9
    PMID: 10666394
62. Casalone R, Mazzola D, Righi R, Granata P, Minelli E, Salvadore M, Lombardo M, Bertani E
    Cytogenetic and interphase FISH analyses of 73 basal cell and three squamous cell carcinomas: different findings in direct preparations and short-term cell cultures.
    Cancer Genet Cytogenet 2000 Apr 15;118(2):136-43
    PMID: 10748294
63. Erlichman C, Boerner SA, Hallgren CG, Spieker R, Wang XY, James CD, Scheffer GL, Maliepaard M, Ross DD, Bible KC, Kaufmann SH
    The HER tyrosine kinase inhibitor CI1033 enhances cytotoxicity of 7-ethyl-10-hydroxycamptothecin and topotecan by inhibiting breast cancer resistance protein-mediated drug efflux.
    Cancer Res 2001 Jan 15;61(2):739-48
    PMID: 11212277
64. Deguchi M, Yamashita N, Kagita M, Asari S, Yanagihara T
    [Strip immunoblot assay (SIA) with recombinant antigens and synthetic peptide for detection of anti HIV-1 and HIV-2 antibodies]
    Kansenshogaku Zasshi 2001 May;75(5):371-81
    PMID: 11424486
65. Marklund L, Henriksson R, Grankvist K
    Cisplatin-induced apoptosis of mesothelioma cells is affected by potassium ion flux modulator amphotericin B and bumetanide.
    Int J Cancer 2001 Aug 15;93(4):577-83
    PMID: 11477563
66. Pekosz A, Lamb RA
    Identification of a membrane targeting and degradation signal in the p42 protein of influenza C virus.
    J Virol 2000 Nov;74(22):10480-8
    PMID: 11044092
67. Narita M, Shimizu K, Hayashi Y, Taki T, Taniwaki M, Hosoda F, Kobayashi H, Nakamura H, Sadamori N, Ohnishi H, Bessho F, Yanagisawa M, Ohki M
    Consistent detection of CALM-AF10 chimaeric transcripts in haematological malignancies with t(10;11)(p13;q14) and identification of novel transcripts.
    Br J Haematol 1999 Jun;105(4):928-37
    PMID: 10554802
68. Yamada T
    Neuroanatomic substrates of lower extremity somatosensory evoked potentials.
    J Clin Neurophysiol 2000 May;17(3):269-79
    PMID: 10928639
69. Honma Y, Ishii Y, Kasukabe T, Okabe-Kado J, Yamamoto-Yamaguchi Y, Kakegawa T, Awaya A
    Induction of differentiation of human myeloid leukemia cells by novel synthetic neurotrophic pyrimidine derivatives.
    Exp Hematol 2001 Feb;29(2):194-201
    PMID: 11166458
70. Mertens D, Wolf S, Bullinger L, Ohl S, Schaffner C, Dohner H, Stilgenbauer S, Lichter P
    BCMSUN, a candidate gene for B-cell chronic lymphocytic leukemia and mantle-cell lymphoma, has an independently expressed homolog on 1p22-p31, BCMSUN-like.
    Int J Cancer 2000 Dec 1;88(5):692-7
    PMID: 11072235
71. Marklund L, Henriksson R, Grankvist K
    Amphotericin B-induced apoptosis and cytotoxicity is prevented by the Na+, K+, 2Cl(-)-cotransport blocker bumetanide.
    Life Sci 2000;66(23):PL319-24
    PMID: 10855952
72. Wang JY, Zhen DK, Zilberstein ME, Falco VM, Bianchi DW
    Non-invasive exclusion of fetal aneuploidy in an at-risk couple with a balanced translocation.
    Mol Hum Reprod 2000 Feb;6(2):103-6
    PMID: 10655451
73. Perez-Gomez M, Junque C, Mercader JM, Berenguer J
    [Application of magnetic resonance spectroscopy in the study of brain disease]
    Rev Neurol 2000 Jan 16-31;30(2):155-60
    PMID: 10730323
74. Andrews JM, O'donovan DG, Hebbard GS, Malbert CH, Doran SM, Dent J
    Human duodenal phase III migrating motor complex activity is predominantly antegrade, as revealed by high-resolution manometry and colour pressure plots.
    Neurogastroenterol Motil 2002 Aug;14(4):331-8
    PMID: 12213100
75. Hashinaka K, Nishikata I, Hashida S, Adachi A, Oka S, Ishikawa E
    Preparations of recombinant HIV-1 p66 antigen to improve the specificity of immune complex transfer enzyme immunoassay of antibody IgG to HIV-1 reverse transcriptase.
    J Clin Lab Anal 2000;14(4):169-79
    PMID: 10906770
76. Tarkkanen M, Wiklund TA, Virolainen MJ, Larramendy ML, Mandahl N, Mertens F, Blomqvist CP, Tukiainen EJ, Miettinen MM, Elomaa AI, Knuutila YS
    Comparative genomic hybridization of postirradiation sarcomas.
    Cancer 2001 Oct 1;92(7):1992-8
    PMID: 11745275
77. Itoh M, Chiba H, Noutomi T, Takada E, Mizuguchi J
    Cleavage of Bax-alpha and Bcl-x(L) during carboplatin-mediated apoptosis in squamous cell carcinoma cell line.
    Oral Oncol 2000 May;36(3):277-85
    PMID: 10793331
78. Kamijo K, Yamazaki T, Kiyuna T, Takaki Y, Kuroiwa Y
    Visual event-related potentials during movement imagery and the dipole analysis.
    Brain Topogr 2002 Summer;14(4):279-92
    PMID: 12137361
79. Behnam-Motlagh P, Sandstrom PE, Henriksson R, Grankvist K
    Diverging effects of 5-HT3 receptor antagonists ondansetron and granisetron on estramustine-inhibited cellular potassium transport.
    Pharmacol Toxicol 2001 May;88(5):244-9
    PMID: 11393584
80. Wojtkowiak M, Markiewicz L, Kempa G
    Effect of low acceleration simulator training on +Gz acceleration tolerance level.
    J Gravit Physiol 1998 Jul;5(1):P31-2
    PMID: 11542353
81. Marenholz I, Zirra M, Fischer DF, Backendorf C, Ziegler A, Mischke D
    Identification of human epidermal differentiation complex (EDC)-encoded genes by subtractive hybridization of entire YACs to a gridded keratinocyte cDNA library.
    Genome Res 2001 Mar;11(3):341-55
    PMID: 11230159
82. Ozaki T, Schaefer KL, Wai D, Buerger H, Flege S, Lindner N, Kevric M, Diallo R, Bankfalvi A, Brinkschmidt C, Juergens H, Winkelmann W, Dockhorn-Dworniczak B, Bielack SS, Poremba C
    Genetic imbalances revealed by comparative genomic hybridization in osteosarcomas.
    Int J Cancer 2002 Dec 1;102(4):355-65
    PMID: 12402305
83. Curcio C, Baqui MM, Salvatore D, Rihn BH, Mohr S, Harney JW, Larsen PR, Bianco AC
    The human type 2 iodothyronine deiodinase is a selenoprotein highly expressed in a mesothelioma cell line.
    J Biol Chem 2001 Aug 10;276(32):30183-7
    PMID: 11425850
84. Petersen S, Aninat-Meyer M, Schluns K, Gellert K, Dietel M, Petersen I
    Chromosomal alterations in the clonal evolution to the metastatic stage of squamous cell carcinomas of the lung.
    Br J Cancer 2000 Jan;82(1):65-73
    PMID: 10638968
85. Arbeille P, Herault S
    Cardiac hemodynamics at rest and during LBNP after 4 days and 6 weeks in HDT.
    J Gravit Physiol 1997 Jul;4(2):P31-2
    PMID: 11540687
86. Pitt J, Henrard D, FitzGerald G, Mofenson L, Lew J, Hillyer G, Mendez H, Cooper E, Hanson C, Rich KC
    Human immunodeficiency virus (HIV) type 1 antibodies in perinatal HIV-1 infection: association with human HIV-1 transmission, infection, and disease progression. For the Women and Infants Transmission Study.
    J Infect Dis 2000 Oct;182(4):1243-6
    PMID: 10979926
87. Balazs M, Adam Z, Treszl A, Begany A, Hunyadi J, Adany R
    Chromosomal imbalances in primary and metastatic melanomas revealed by comparative genomic hybridization.
    Cytometry 2001 Aug 15;46(4):222-32
    PMID: 11514955
88. Marklund L, Behnam-Motlagh P, Henriksson R, Grankvist K
    Bumetanide annihilation of amphotericin B-induced apoptosis and cytotoxicity is due to its effect on cellular K+ flux.
    J Antimicrob Chemother 2001 Dec;48(6):781-6
    PMID: 11733461
89. Wu H, Zhang GY, Knight JF
    T cell lines specific for a synthetic Heymann nephritis peptide derived from the receptor-associated protein.
    Clin Exp Immunol 2000 Jul;121(1):157-64
    PMID: 10886254
90. Vyas GN
    Human peripheral blood mononuclear cell substrate for propagating wild type HIV-1.
    Dev Biol (Basel) 2001;106:345-56; discussion 356-7
    PMID: 11761248
91. Gordon A, McManus A, Anderson J, Fisher C, Abe S, Nojima T, Pritchard-Jones K, Shipley J
    Chromosomal imbalances in pleomorphic rhabdomyosarcomas and identification of the alveolar rhabdomyosarcoma-associated PAX3-FOXO1A fusion gene in one case.
    Cancer Genet Cytogenet 2003 Jan 1;140(1):73-7
    PMID: 12550764
92. Doucet C, Giron-Michel J, Canonica GW, Azzarone B
    Human lung myofibroblasts as effectors of the inflammatory process: the common receptor gamma chain is induced by Th2 cytokines, and CD40 ligand is induced by lipopolysaccharide, thrombin and TNF-alpha.
    Eur J Immunol 2002 Sep;32(9):2437-49
    PMID: 12207328
93. Bucciantini M, Giannoni E, Chiti F, Baroni F, Formigli L, Zurdo J, Taddei N, Ramponi G, Dobson CM, Stefani M
    Inherent toxicity of aggregates implies a common mechanism for protein misfolding diseases.
    Nature 2002 Apr 4;416(6880):507-11
    PMID: 11932737
94. Ellis RJ, Pinheiro TJ
    Medicine: danger--misfolding proteins.
    Nature 2002 Apr 4;416(6880):483-4
    PMID: 11932723

Options:

• Limit of E-value: 1e-20
• Limit of Length: 100000
• Limit of references returned each search: 40
• Limit of retry times: 3
• Direct references: Yes
• Indirect references: Yes
• Allow symbol with hyphen: Yes
• Use stop word list: Yes
• Thesaurus:
  • Homo sapiens (Version: 20021206.0)
  • Saccharomyces cerevisiae (Version: 20021123.0)

 
BLASTN 2.2.5 [Nov-16-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
RID: 1048230941-03264-31593
Query= 
         (825 letters)

Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences) 
           1,707,549 sequences; 7,931,913,529 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|2804269|dbj|D50617.1|YSCCHRVIN Saccharomyces cerevisiae chrom...  1635   0.0  
gi|218446|dbj|D10515.1|YSCNIN1 Yeast DNA for NIN1 gene               1635   0.0  
gi|171738|gb|M14411.1|YSCHXKB Yeast (S.cerevisiae) hexokinase PI...   678   0.0  
gi|171736|gb|M14410.1|YSCHXKA Yeast (S.cerevisiae) hexokinase PI...   678   0.0  
gi|3395491|emb|AL022067.1|HS134E15 Human DNA sequence from clone...    44   0.34 
gi|16609995|emb|AL352955.7|CNS05TBU Human chromosome 14 DNA sequ...    44   0.34 
gi|6143846|gb|AC008082.12| Homo sapiens 3 BAC RP11-73N1 (Roswell...    42   1.3  
gi|20905327|gb|AE013317.1| Methanosarcina mazei strain Goe1, sec...    40   5.2  
gi|28208715|gb|AF528097.1| Clostridium tetani plasmid pE88, comp...    40   5.2  
gi|27753867|gb|AC134620.4| Homo sapiens BAC clone RP11-1432C17 f...    40   5.2  
gi|22450222|gb|AY101214.1| Ichthyophis glutinosus 12S ribosomal ...    40   5.2  
gi|22450221|gb|AY101213.1| Ichthyophis orthoplicatus 12S ribosom...    40   5.2  
gi|20270176|gb|AC091162.9| Homo sapiens chromosome 8, clone RP11...    40   5.2  
gi|18030120|gb|AC083942.8| Genomic sequence for Oryza sativa, Ni...    40   5.2  
gi|6599068|emb|AL008639.15|HS9E21 Human DNA sequence from clone ...    40   5.2  
gi|4731358|gb|AF131221.1|AF131221 Dictyostelium discoideum p21-a...    40   5.2  
gi|15320466|dbj|AP001093.5| Homo sapiens genomic DNA, chromosome...    40   5.2  
gi|20338686|emb|AJ320079.1|MSC320079 Mussaenda scratchleyi chlor...    40   5.2  
gi|24460081|dbj|AP004299.2| Oryza sativa (japonica cultivar-grou...    40   5.2  
gi|14596288|emb|AL162852.14| Human DNA sequence from clone RP11-...    40   5.2  
gi|3687215|gb|AC005736.1|AC005736 Homo sapiens chromosome 16, BA...    40   5.2  
gi|1658156|gb|U74469.1|LMU74469 Locusta migratoria juvenile horm...    40   5.2  

ALIGNMENTS
>gi|2804269|dbj|D50617.1|YSCCHRVIN Saccharomyces cerevisiae chromosome VI complete DNA sequence
          Length = 270148

 Score = 1635 bits (825), Expect = 0.0
 Identities = 825/825 (100%)
 Strand = Plus / Plus

                                                                          
Query: 1      atgccctcgttagccgaattgaccaagtcgttaagcatagcctttgaaaacggcgattat 60
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252493 atgccctcgttagccgaattgaccaagtcgttaagcatagcctttgaaaacggcgattat 252552

                                                                          
Query: 61     gccgcgtgtgagaagctcttgccccctatcaagatcgaacttatcaagaataacctttta 120
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252553 gccgcgtgtgagaagctcttgccccctatcaagatcgaacttatcaagaataacctttta 252612

                                                                          
Query: 121    atacctgacttatccattcaaaatgacatctatttgaatgatttgatgattactaaaagg 180
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252613 atacctgacttatccattcaaaatgacatctatttgaatgatttgatgattactaaaagg 252672

                                                                          
Query: 181    atcctggaagtaggtgcccttgctagcatccaaactttcaattttgacagcttcgagaat 240
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252673 atcctggaagtaggtgcccttgctagcatccaaactttcaattttgacagcttcgagaat 252732

                                                                          
Query: 241    tacttcaaccaattgaagccttactactttagcaacaatcataaattatctgaatctgac 300
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252733 tacttcaaccaattgaagccttactactttagcaacaatcataaattatctgaatctgac 252792

                                                                          
Query: 301    aagaaatcgaagctgataagtctgtatttgttgaacttattgtctcagaataacacaacc 360
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252793 aagaaatcgaagctgataagtctgtatttgttgaacttattgtctcagaataacacaacc 252852

                                                                          
Query: 361    aagtttcactcggaattgcagtatctagataaacatatcaagaacttggaagacgattca 420
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252853 aagtttcactcggaattgcagtatctagataaacatatcaagaacttggaagacgattca 252912

                                                                          
Query: 421    cttttgtcttaccctatcaaactagacagatggctcatggaagggtcgtaccagaaagca 480
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252913 cttttgtcttaccctatcaaactagacagatggctcatggaagggtcgtaccagaaagca 252972

                                                                          
Query: 481    tgggatcttctgcaatctgggtcgcagaatatatcagaattcgactcttttaccgatatc 540
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252973 tgggatcttctgcaatctgggtcgcagaatatatcagaattcgactcttttaccgatatc 253032

                                                                          
Query: 541    ctaaaatcagctataagagacgaaattgctaaaaataccgagctatcctacgactttctc 600
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253033 ctaaaatcagctataagagacgaaattgctaaaaataccgagctatcctacgactttctc 253092

                                                                          
Query: 601    cctctctccaacataaaggctttgctctttttcaacaacgaaaaagaaactgaaaaattt 660
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253093 cctctctccaacataaaggctttgctctttttcaacaacgaaaaagaaactgaaaaattt 253152

                                                                          
Query: 661    gcactagagagaaactggcctattgtcaactcgaaagtttacttcaataaccaatcaaag 720
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253153 gcactagagagaaactggcctattgtcaactcgaaagtttacttcaataaccaatcaaag 253212

                                                                          
Query: 721    gagaaagctgattacgaagatgaaatgatgcatgaagaagaccaaaagacaaacattatc 780
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253213 gagaaagctgattacgaagatgaaatgatgcatgaagaagaccaaaagacaaacattatc 253272

                                                           
Query: 781    gaaaaagcaatggattatgccataagtattgaaaatattgtgtaa 825
              |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253273 gaaaaagcaatggattatgccataagtattgaaaatattgtgtaa 253317


>gi|218446|dbj|D10515.1|YSCNIN1 Yeast DNA for NIN1 gene
          Length = 2354

 Score = 1635 bits (825), Expect = 0.0
 Identities = 825/825 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1    atgccctcgttagccgaattgaccaagtcgttaagcatagcctttgaaaacggcgattat 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680  atgccctcgttagccgaattgaccaagtcgttaagcatagcctttgaaaacggcgattat 739

                                                                        
Query: 61   gccgcgtgtgagaagctcttgccccctatcaagatcgaacttatcaagaataacctttta 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740  gccgcgtgtgagaagctcttgccccctatcaagatcgaacttatcaagaataacctttta 799

                                                                        
Query: 121  atacctgacttatccattcaaaatgacatctatttgaatgatttgatgattactaaaagg 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800  atacctgacttatccattcaaaatgacatctatttgaatgatttgatgattactaaaagg 859

                                                                        
Query: 181  atcctggaagtaggtgcccttgctagcatccaaactttcaattttgacagcttcgagaat 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860  atcctggaagtaggtgcccttgctagcatccaaactttcaattttgacagcttcgagaat 919

                                                                        
Query: 241  tacttcaaccaattgaagccttactactttagcaacaatcataaattatctgaatctgac 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920  tacttcaaccaattgaagccttactactttagcaacaatcataaattatctgaatctgac 979

                                                                        
Query: 301  aagaaatcgaagctgataagtctgtatttgttgaacttattgtctcagaataacacaacc 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980  aagaaatcgaagctgataagtctgtatttgttgaacttattgtctcagaataacacaacc 1039

                                                                        
Query: 361  aagtttcactcggaattgcagtatctagataaacatatcaagaacttggaagacgattca 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1040 aagtttcactcggaattgcagtatctagataaacatatcaagaacttggaagacgattca 1099

                                                                        
Query: 421  cttttgtcttaccctatcaaactagacagatggctcatggaagggtcgtaccagaaagca 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1100 cttttgtcttaccctatcaaactagacagatggctcatggaagggtcgtaccagaaagca 1159

                                                                        
Query: 481  tgggatcttctgcaatctgggtcgcagaatatatcagaattcgactcttttaccgatatc 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1160 tgggatcttctgcaatctgggtcgcagaatatatcagaattcgactcttttaccgatatc 1219

                                                                        
Query: 541  ctaaaatcagctataagagacgaaattgctaaaaataccgagctatcctacgactttctc 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1220 ctaaaatcagctataagagacgaaattgctaaaaataccgagctatcctacgactttctc 1279

                                                                        
Query: 601  cctctctccaacataaaggctttgctctttttcaacaacgaaaaagaaactgaaaaattt 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1280 cctctctccaacataaaggctttgctctttttcaacaacgaaaaagaaactgaaaaattt 1339

                                                                        
Query: 661  gcactagagagaaactggcctattgtcaactcgaaagtttacttcaataaccaatcaaag 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1340 gcactagagagaaactggcctattgtcaactcgaaagtttacttcaataaccaatcaaag 1399

                                                                        
Query: 721  gagaaagctgattacgaagatgaaatgatgcatgaagaagaccaaaagacaaacattatc 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1400 gagaaagctgattacgaagatgaaatgatgcatgaagaagaccaaaagacaaacattatc 1459

                                                         
Query: 781  gaaaaagcaatggattatgccataagtattgaaaatattgtgtaa 825
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1460 gaaaaagcaatggattatgccataagtattgaaaatattgtgtaa 1504


>gi|171738|gb|M14411.1|YSCHXKB Yeast (S.cerevisiae) hexokinase PI (HXK2) gene, complete cds
          Length = 2781

 Score =  678 bits (342), Expect = 0.0
 Identities = 342/342 (100%)
 Strand = Plus / Minus

                                                                        
Query: 484  gatcttctgcaatctgggtcgcagaatatatcagaattcgactcttttaccgatatccta 543
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2781 gatcttctgcaatctgggtcgcagaatatatcagaattcgactcttttaccgatatccta 2722

                                                                        
Query: 544  aaatcagctataagagacgaaattgctaaaaataccgagctatcctacgactttctccct 603
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2721 aaatcagctataagagacgaaattgctaaaaataccgagctatcctacgactttctccct 2662

                                                                        
Query: 604  ctctccaacataaaggctttgctctttttcaacaacgaaaaagaaactgaaaaatttgca 663
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2661 ctctccaacataaaggctttgctctttttcaacaacgaaaaagaaactgaaaaatttgca 2602

                                                                        
Query: 664  ctagagagaaactggcctattgtcaactcgaaagtttacttcaataaccaatcaaaggag 723
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2601 ctagagagaaactggcctattgtcaactcgaaagtttacttcaataaccaatcaaaggag 2542

                                                                        
Query: 724  aaagctgattacgaagatgaaatgatgcatgaagaagaccaaaagacaaacattatcgaa 783
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2541 aaagctgattacgaagatgaaatgatgcatgaagaagaccaaaagacaaacattatcgaa 2482

                                                      
Query: 784  aaagcaatggattatgccataagtattgaaaatattgtgtaa 825
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2481 aaagcaatggattatgccataagtattgaaaatattgtgtaa 2440


>gi|171736|gb|M14410.1|YSCHXKA Yeast (S.cerevisiae) hexokinase PI (HXK1) gene, complete cds
          Length = 2778

 Score =  678 bits (342), Expect = 0.0
 Identities = 342/342 (100%)
 Strand = Plus / Minus

                                                                        
Query: 484  gatcttctgcaatctgggtcgcagaatatatcagaattcgactcttttaccgatatccta 543
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2778 gatcttctgcaatctgggtcgcagaatatatcagaattcgactcttttaccgatatccta 2719

                                                                        
Query: 544  aaatcagctataagagacgaaattgctaaaaataccgagctatcctacgactttctccct 603
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2718 aaatcagctataagagacgaaattgctaaaaataccgagctatcctacgactttctccct 2659

                                                                        
Query: 604  ctctccaacataaaggctttgctctttttcaacaacgaaaaagaaactgaaaaatttgca 663
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2658 ctctccaacataaaggctttgctctttttcaacaacgaaaaagaaactgaaaaatttgca 2599

                                                                        
Query: 664  ctagagagaaactggcctattgtcaactcgaaagtttacttcaataaccaatcaaaggag 723
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2598 ctagagagaaactggcctattgtcaactcgaaagtttacttcaataaccaatcaaaggag 2539

                                                                        
Query: 724  aaagctgattacgaagatgaaatgatgcatgaagaagaccaaaagacaaacattatcgaa 783
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2538 aaagctgattacgaagatgaaatgatgcatgaagaagaccaaaagacaaacattatcgaa 2479

                                                      
Query: 784  aaagcaatggattatgccataagtattgaaaatattgtgtaa 825
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2478 aaagcaatggattatgccataagtattgaaaatattgtgtaa 2437


>gi|3395491|emb|AL022067.1|HS134E15 Human DNA sequence from clone RP1-134E15 on chromosome 6q21, complete
             sequence
          Length = 177163

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 511   atatcagaattcgactctttta 532
             ||||||||||||||||||||||
Sbjct: 56783 atatcagaattcgactctttta 56804


>gi|16609995|emb|AL352955.7|CNS05TBU Human chromosome 14 DNA sequence BAC R-1141N12 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 158099

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 158   atgatttgatgattactaaaag 179
             ||||||||||||||||||||||
Sbjct: 90021 atgatttgatgattactaaaag 90042


>gi|6143846|gb|AC008082.12| Homo sapiens 3 BAC RP11-73N1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 171619

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 640   gaaaaagaaactgaaaaattt 660
             |||||||||||||||||||||
Sbjct: 99181 gaaaaagaaactgaaaaattt 99201


>gi|20905327|gb|AE013317.1| Methanosarcina mazei strain Goe1, section 99 of 379 of the complete
            genome
          Length = 11802

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 637  aacgaaaaagaaactgaaaa 656
            ||||||||||||||||||||
Sbjct: 1092 aacgaaaaagaaactgaaaa 1111


>gi|28208715|gb|AF528097.1| Clostridium tetani plasmid pE88, complete sequence
          Length = 74082

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 641   aaaaagaaactgaaaaattt 660
             ||||||||||||||||||||
Sbjct: 21652 aaaaagaaactgaaaaattt 21671


>gi|27753867|gb|AC134620.4| Homo sapiens BAC clone RP11-1432C17 from 4, complete sequence
          Length = 80150

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 420   acttttgtcttaccctatca 439
             ||||||||||||||||||||
Sbjct: 45123 acttttgtcttaccctatca 45142


>gi|22450222|gb|AY101214.1| Ichthyophis glutinosus 12S ribosomal RNA gene, partial sequence;
           mitochondrial gene for mitochondrial product
          Length = 375

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 637 aacgaaaaagaaactgaaaaattt 660
           ||||||||||||| ||||||||||
Sbjct: 285 aacgaaaaagaaagtgaaaaattt 308


>gi|22450221|gb|AY101213.1| Ichthyophis orthoplicatus 12S ribosomal RNA gene, partial sequence;
           mitochondrial gene for mitochondrial product
          Length = 376

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 637 aacgaaaaagaaactgaaaaattt 660
           ||||||||||||| ||||||||||
Sbjct: 286 aacgaaaaagaaagtgaaaaattt 309


>gi|20270176|gb|AC091162.9| Homo sapiens chromosome 8, clone RP11-255E13, complete sequence
          Length = 149697

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 644   aagaaactgaaaaatttgca 663
             ||||||||||||||||||||
Sbjct: 29920 aagaaactgaaaaatttgca 29901


>gi|18030120|gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0002D01, from chromosome 3, complete sequence
          Length = 187589

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 210   ccaaactttcaattttgaca 229
             ||||||||||||||||||||
Sbjct: 80644 ccaaactttcaattttgaca 80625


>gi|6599068|emb|AL008639.15|HS9E21 Human DNA sequence from clone RP1-9E21 on chromosome 1q24-25, complete
             sequence
          Length = 106977

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 473   agaaagcatgggatcttctgcaat 496
             ||||||||||||||||||| ||||
Sbjct: 28415 agaaagcatgggatcttcttcaat 28392


>gi|4731358|gb|AF131221.1|AF131221 Dictyostelium discoideum p21-activated protein kinase PakA (pakA)
           mRNA, complete cds
          Length = 3672

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 151 tatttgaatgatttgatgat 170
           ||||||||||||||||||||
Sbjct: 65  tatttgaatgatttgatgat 46


>gi|15320466|dbj|AP001093.5| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-774L13, complete
             sequence
          Length = 91073

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 802   ataagtattgaaaatattgtgtaa 825
             |||| |||||||||||||||||||
Sbjct: 16515 ataattattgaaaatattgtgtaa 16538


>gi|20338686|emb|AJ320079.1|MSC320079 Mussaenda scratchleyi chloroplast rps16 gene, partial intron
          Length = 781

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 626 tctttttcaacaacgaaaaagaaa 649
           |||||||||| |||||||||||||
Sbjct: 616 tctttttcaagaacgaaaaagaaa 593


>gi|24460081|dbj|AP004299.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0434A03
          Length = 146505

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 210    ccaaactttcaattttgaca 229
              ||||||||||||||||||||
Sbjct: 104948 ccaaactttcaattttgaca 104929


>gi|14596288|emb|AL162852.14| Human DNA sequence from clone RP11-267I18 on chromosome 13, complete
             sequence
          Length = 110166

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 595   tttctccctctctccaacat 614
             ||||||||||||||||||||
Sbjct: 64033 tttctccctctctccaacat 64052


>gi|3687215|gb|AC005736.1|AC005736 Homo sapiens chromosome 16, BAC clone 462G18 (LANL), complete sequence
          Length = 215441

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 613    ataaaggctttgctcttttt 632
              ||||||||||||||||||||
Sbjct: 146826 ataaaggctttgctcttttt 146845


>gi|1658156|gb|U74469.1|LMU74469 Locusta migratoria juvenile hormone binding protein mRNA, complete
           cds
          Length = 4016

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 152 atttgaatgatttgatgatt 171
           ||||||||||||||||||||
Sbjct: 182 atttgaatgatttgatgatt 163


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
  or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Mar 20, 2003 10:39 PM
  Number of letters in database: -658,021,059
  Number of sequences in database:  1,707,549
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,992,739
Number of Sequences: 1707549
Number of extensions: 3992739
Number of successful extensions: 84219
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84181
Number of HSP's gapped (non-prelim): 38
length of query: 825
length of database: 7,931,913,529
effective HSP length: 22
effective length of query: 803
effective length of database: 7,894,347,451
effective search space: 6339161003153
effective search space used: 6339161003153
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)






 
BLASTX 2.2.5 [Nov-16-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
RID: 1048254669-05764-19588
Query= ORFN:YFR052W RPN12 SGDID:S0001948, Chr VI from 252493-253317
         (825 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           1,376,251 sequences; 442,128,549 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|14318577|ref|NP_116710.1| Part of 26S proteasome complex that...   480   e-135
gi|27803080|emb|CAD60783.1| unnamed protein product [Podospora a...   125   7e-28
gi|28919143|gb|EAA28646.1| hypothetical protein [Neurospora crassa]   124   1e-27
gi|28828741|gb|AAO51336.1| similar to Oryza sativa (Rice). 26S p...   108   1e-22
gi|4506233|ref|NP_002803.1| proteasome 26S non-ATPase subunit 8;...   102   7e-21
gi|1709170|sp|P50524|MTS3_SCHPO 26S proteasome regulatory subuni...   101   2e-20
gi|26371077|dbj|BAB22458.2| unnamed protein product [Mus musculu...   100   2e-20
gi|13278567|gb|AAH04075.1| RIKEN cDNA 6720456J22 gene [Mus muscu...   100   2e-20
gi|27229063|ref|NP_080821.2| proteasome 26S non-ATPase subunit 8...   100   3e-20
gi|20978554|sp|Q9CX56|PSD8_MOUSE 26S proteasome non-ATPase regul...   100   3e-20
gi|27730991|ref|XP_214888.1| similar to RIKEN cDNA 6720456J22 ge...   100   3e-20
gi|26341828|dbj|BAC34576.1| unnamed protein product [Mus musculus]     97   2e-19
gi|15217661|ref|NP_176633.1| 26S proteasome regulatory subunit (...    91   2e-17
gi|21295912|gb|EAA08057.1| agCP1220 [Anopheles gambiae str. PEST]      89   1e-16
gi|17297985|dbj|BAB78490.1| 26S proteasome regulatory particle n...    87   4e-16
gi|3133095|emb|CAA19021.1| 19s proteasome regulatory subunit [Sc...    79   6e-14
gi|27699245|ref|XP_229953.1| similar to 26S proteasome non-ATPas...    74   3e-12
gi|21357229|ref|NP_648904.1| CG4157-PA [Drosophila melanogaster]...    72   1e-11
gi|17535705|ref|NP_496489.1| Proteasome Regulatory Particle, Non...    70   3e-11
gi|18463067|gb|AAL72635.1|AF404120_1 proteasome regulatory non-A...    68   1e-10
gi|18447010|gb|AAL68096.1| AT18239p [Drosophila melanogaster]          62   1e-08
gi|23487539|gb|EAA21082.1| hypothetical protein [Plasmodium yoel...    60   4e-08
gi|16805212|ref|NP_473240.1| 26S proteasome regulatory subunit S...    53   5e-06
gi|15238267|ref|NP_199019.1| putative protein; protein id: At5g4...    50   3e-05
gi|117307|sp|P02889|PSD8_DICDI Vegetative cell protein X (M4 pro...    48   2e-04
gi|19113542|ref|NP_596750.1| 26s proteasome regulatory subunit m...    44   0.004
gi|23479708|gb|EAA16462.1| hypothetical protein [Plasmodium yoel...    40   0.032
gi|23482331|gb|EAA18343.1| chloroquine resistance marker protein...    38   0.16 
gi|23508014|ref|NP_700684.1| hypothetical protein [Plasmodium fa...    37   0.46 
gi|126505|sp|P18299|LUXA_KRYAS Alkanal monooxygenase alpha chain...    36   0.78 
gi|17538868|ref|NP_502249.1| Ion transport protein with ankyrin ...    35   1.0  
gi|23486317|gb|EAA20771.1| Ubiquitin carboxyl-terminal hydrolase...    35   1.7  
gi|730856|sp|P40418|SWI6_KLULA Regulatory protein SWI6 (Cell-cyc...    34   2.3  
gi|26553946|ref|NP_757880.1| cytosine-specific DNA methyltransfe...    34   3.0  
gi|23491039|gb|EAA22673.1| dentin sialophosphoprotein precursor ...    34   3.0  
gi|27468046|ref|NP_764683.1| ebhA protein [Staphylococcus epider...    33   3.9  
gi|21288948|gb|EAA01241.1| ebiP8479 [Anopheles gambiae str. PEST]      33   3.9  
gi|11359311|pir||T43527 sp8 protein - fission yeast (Schizosacch...    33   5.0  
gi|28922192|gb|EAA31441.1| predicted protein [Neurospora crassa]...    33   5.0  
gi|19115004|ref|NP_594092.1| myosin-like coiled-coil protein sp8...    33   5.0  
gi|14520330|ref|NP_125805.1| molybdenum cofactor biosynthesis pr...    33   5.0  
gi|23612672|ref|NP_704233.1| hypothetical protein [Plasmodium fa...    33   6.6  
gi|15616106|ref|NP_244411.1| phage-related protein [Bacillus hal...    33   6.6  
gi|23510171|ref|NP_702837.1| hypothetical protein [Plasmodium fa...    33   6.6  
gi|27671376|ref|XP_224888.1| similar to AT2 receptor-interacting...    33   6.6  
gi|23957724|ref|NP_473180.2| hypothetical protein, conserved [Pl...    32   8.6  
gi|16766803|ref|NP_462418.1| transcriptional activator of the ma...    32   8.6  
gi|16762772|ref|NP_458389.1| MalT regulatory protein [Salmonella...    32   8.6  
gi|23613621|ref|NP_704642.1| hypothetical protein [Plasmodium fa...    32   8.6  

ALIGNMENTS
>gi|14318577|ref|NP_116710.1| Part of 26S proteasome complex that may activate Cdc28p; Rpn12p
           [Saccharomyces cerevisiae]
 gi|417364|sp|P32496|RPNC_YEAST 26S proteasome regulatory subunit RPN12 (Nuclear integrity protein
           1)
 gi|283217|pir||S27434 26S proteasome regulatory complex chain RPN12 - yeast
           (Saccharomyces cerevisiae)
 gi|218447|dbj|BAA01390.1| NIN1 protein [Saccharomyces cerevisiae]
 gi|836807|dbj|BAA09291.1| nuclear integrity protein 1 [Saccharomyces cerevisiae]
          Length = 274

 Score =  480 bits (1236), Expect = e-135
 Identities = 244/274 (89%), Positives = 244/274 (89%)
 Frame = +1

Query: 1   MPSLAELTKSLSIAFENGDYAACEKLLPPXXXXXXXXXXXXPDLSIQNDIYLNDLMITKR 180
           MPSLAELTKSLSIAFENGDYAACEKLLPP            PDLSIQNDIYLNDLMITKR
Sbjct: 1   MPSLAELTKSLSIAFENGDYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMITKR 60

Query: 181 ILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDXXXXXXXXXXXXXXXXXXTT 360
           ILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESD                  TT
Sbjct: 61  ILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDKKSKLISLYLLNLLSQNNTT 120

Query: 361 KFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDI 540
           KFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDI
Sbjct: 121 KFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDI 180

Query: 541 LKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALERNWPIVNSKVYFNNQSK 720
           LKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALERNWPIVNSKVYFNNQSK
Sbjct: 181 LKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALERNWPIVNSKVYFNNQSK 240

Query: 721 EKADYEDEMMHEEDQKTNIIEKAMDYAISIENIV 822
           EKADYEDEMMHEEDQKTNIIEKAMDYAISIENIV
Sbjct: 241 EKADYEDEMMHEEDQKTNIIEKAMDYAISIENIV 274


>gi|27803080|emb|CAD60783.1| unnamed protein product [Podospora anserina]
          Length = 273

 Score =  125 bits (314), Expect = 7e-28
 Identities = 73/224 (32%), Positives = 114/224 (50%), Gaps = 3/224 (1%)
 Frame = +1

Query: 160 DLMITKRILEVGALASIQTFNFDSFENYFNQLKPYY-FSNNHKLSESDXXXXXXXXXXXX 336
           +L + + + E+GAL S++  N DSF  Y +QL+P+Y    +   S S             
Sbjct: 50  NLTLAREVYELGALHSLRAKNPDSFTRYVSQLQPFYELPPSAFSSPSQNQNKVTALWLLF 109

Query: 337 XXXXXXTTKFHSELQYLDKH--IKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQN 510
                  T+FHS+L+ L     +  +E+D  L YPIKL+RWLMEG+Y + W  ++ G   
Sbjct: 110 LLTQGRYTEFHSDLEGLSTRGSVAEVENDKFLGYPIKLERWLMEGAYDRVWKAMKKGEVP 169

Query: 511 ISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALERNWPIVN 690
               +    +L   IR EIA ++E +Y  LP  + ++LLF ++E     FA  R W I +
Sbjct: 170 SENANINKKVLTPQIRREIASSSERAYPSLPFLSAQSLLFLDSEGAVVDFAHSRGWVIKD 229

Query: 691 SKVYFNNQSKEKADYEDEMMHEEDQKTNIIEKAMDYAISIENIV 822
             +YF   ++  AD E E   E++    +IE  + YA  +E IV
Sbjct: 230 RTIYFPTAAELNADEEGEQEQEKEVGQMVIENTLGYARQLETIV 273


>gi|28919143|gb|EAA28646.1| hypothetical protein [Neurospora crassa]
          Length = 289

 Score =  124 bits (312), Expect = 1e-27
 Identities = 79/234 (33%), Positives = 118/234 (50%), Gaps = 16/234 (6%)
 Frame = +1

Query: 169 ITKRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNH--------KLSESDXXXXXXXX 324
           + +++ E GALASI+  N D+F  Y +QL+ +Y   +         +++ +D        
Sbjct: 58  LARQVYEQGALASIRAKNPDAFLRYVSQLQGFYELESTVGTGAAGGRIAGADANREEKNK 117

Query: 325 XXXXXXXXXXT----TKFHSELQYLDKHI----KNLEDDSLLSYPIKLDRWLMEGSYQKA 480
                     T     +FHSEL+ L   +    + LE D  L YPIKL+RWLMEGSY + 
Sbjct: 118 VTGLYLLLLLTQGQYAEFHSELEALSTRLGGATRELEADRYLGYPIKLERWLMEGSYDRV 177

Query: 481 WDLLQSGSQNISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKF 660
           W  ++ G     E+  F++IL   IR EIA ++E +Y  LP+S+ K+LLF  +E E  +F
Sbjct: 178 WKAMKKGEVPCEEYGVFSEILTFQIRSEIASSSERAYPSLPISSTKSLLFLESEGEVVEF 237

Query: 661 ALERNWPIVNSKVYFNNQSKEKADYEDEMMHEEDQKTNIIEKAMDYAISIENIV 822
           A  R W + +  +YF   S E    E     E+     IIE  + YA  +E IV
Sbjct: 238 ARSRGWVLKDGHIYF--PSAEPTTEEAGAEQEKPFSRLIIENTLGYARELETIV 289


>gi|28828741|gb|AAO51336.1| similar to Oryza sativa (Rice). 26S proteasome regulatory particle
           non-ATPase subunit12 [Dictyostelium discoideum]
          Length = 263

 Score =  108 bits (269), Expect = 1e-22
 Identities = 74/259 (28%), Positives = 124/259 (47%), Gaps = 1/259 (0%)
 Frame = +1

Query: 49  NGDYAACEKLLPPXXXXXXXXXXXXPDLSIQNDIYLNDLMITKRILEVGALASIQTFNFD 228
           N D A    +L                LS  +D    DL++ + ILE+ +L SI+  + D
Sbjct: 20  NSDKAQITPVLVQLKLAATIHLEKPTSLSNVSDKVKKDLVLAREILELISLYSIKIKDID 79

Query: 229 SFENYFNQLKPYYFSNNHKLSESDXXXXXXXXXXXXXXXXXXTTKFHSELQYLDKHIKNL 408
           SFE  FNQLK YY+     ++ S                   T++FHSE++ ++    NL
Sbjct: 80  SFERTFNQLKTYYYDYKSIIAPSTLEYQIIGLNLMRLLAKHKTSEFHSEIELIE--FNNL 137

Query: 409 EDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEF-DSFTDILKSAIRDEIAKNTEL 585
            D+S + +P+ +++ + EGSY K   ++QS S   SE+   F DIL  +I+++IA  +E 
Sbjct: 138 -DNSFIKFPLLVEKSITEGSYNK---IIQSRSGVPSEYYQVFLDILADSIKEDIANCSEK 193

Query: 586 SYDFLPLSNIKALLFFNNEKETEKFALERNWPIVNSKVYFNNQSKEKADYEDEMMHEEDQ 765
           S+  L L + + +L FN+  + +++  ERNW +    + F N   +           E  
Sbjct: 194 SFKTLSLKDAEKVLLFNDNNQFQQYIKERNWKVQGDVIQFGNNDNQTV---------EIP 244

Query: 766 KTNIIEKAMDYAISIENIV 822
              +I + + YA  +E IV
Sbjct: 245 SLQLIHQTLHYAKELERIV 263


>gi|4506233|ref|NP_002803.1| proteasome 26S non-ATPase subunit 8; 26S proteasome regulatory
           subunit p31; 26S proteasome regulatory subunit S14; 26S
           proteasome non-ATPase regulatory subunit 8 [Homo
           sapiens]
 gi|1346766|sp|P48556|PSD8_HUMAN 26S proteasome non-ATPase regulatory subunit 8 (26S proteasome
           regulatory subunit S14) (p31)
 gi|1362741|pir||S56108 26S proteasome regulatory complex chain p31 [validated] - human
 gi|1037164|dbj|BAA07237.1| 26S proteasome subunit p31 [Homo sapiens]
 gi|3702282|gb|AAC62833.1| PP31_HUMAN [Homo sapiens]
 gi|12654653|gb|AAH01164.1|AAH01164 proteasome (prosome, macropain) 26S subunit, non-ATPase, 8 [Homo
           sapiens]
          Length = 257

 Score =  102 bits (254), Expect = 7e-21
 Identities = 66/220 (30%), Positives = 111/220 (50%)
 Frame = +1

Query: 163 LMITKRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDXXXXXXXXXXXXXX 342
           L++ + ILE+GA  SI   +  SFE Y  QLK YYF    +L ES               
Sbjct: 48  LILARDILEIGAQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLL 107

Query: 343 XXXXTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEF 522
                 +FH+EL+ L    K+++ +  + +P+ L+++LMEGSY K +  L  G+     +
Sbjct: 108 SQNRVAEFHTELERLPA--KDIQTNVYIKHPVSLEQYLMEGSYNKVF--LAKGNIPAESY 163

Query: 523 DSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALERNWPIVNSKVY 702
             F DIL   IRDEIA   E +Y+ +  +    +LFFN  K+   +A +R W ++    Y
Sbjct: 164 TFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFFNTPKKMTDYAKKRGW-VLGPNNY 222

Query: 703 FNNQSKEKADYEDEMMHEEDQKTNIIEKAMDYAISIENIV 822
           ++  S+++   +  +       T + ++ ++YA  +E IV
Sbjct: 223 YSFASQQQKPEDTTI-----PSTELAKQVIEYARQLEMIV 257


>gi|1709170|sp|P50524|MTS3_SCHPO 26S proteasome regulatory subunit mts3
 gi|11280656|pir||T40280 26S proteasome regulatory complex chain mts3 [validated] - fission
           yeast (Schizosaccharomyces pombe)
 gi|1200529|emb|CAA63366.1| 26S protease regulatory subunit [Schizosaccharomyces pombe]
 gi|1589140|prf||2210317A 26S protease subunit
          Length = 270

 Score =  101 bits (251), Expect = 2e-20
 Identities = 67/212 (31%), Positives = 107/212 (50%), Gaps = 1/212 (0%)
 Frame = +1

Query: 175 KRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDXXXXXXXXXXXXXXXXXX 354
           + + E G L SIQT + +SF  Y +Q+ P+Y  +   L  S                   
Sbjct: 51  RNVFEYGVLVSIQTCDIESFARYASQVIPFYHDS---LVPSSRMGLVTGLNLLYLLSENR 107

Query: 355 TTKFHSELQYL-DKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSF 531
             +FH+ L+ + DK +   E D  + + I L++ +MEG++ K   +++S   N  EF  F
Sbjct: 108 IAEFHTALESVPDKSL--FERDPYVEWVISLEQNVMEGAFDKVASMIRSC--NFPEFSYF 163

Query: 532 TDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALERNWPIVNSKVYFNN 711
             I+ S +R+EIA   E  Y  +PLSN  +LL+  N KETEK A ER W I +  +YF  
Sbjct: 164 MKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEERGWDIRDGVIYFPK 223

Query: 712 QSKEKADYEDEMMHEEDQKTNIIEKAMDYAIS 807
           ++    + ED M+ +E+ +  +   A  + IS
Sbjct: 224 EA-NALETEDGMLIDEEDELELPPTASKHTIS 254


>gi|26371077|dbj|BAB22458.2| unnamed protein product [Mus musculus]
 gi|26385299|dbj|BAB22789.2| unnamed protein product [Mus musculus]
 gi|26389121|dbj|BAC25683.1| unnamed protein product [Mus musculus]
          Length = 289

 Score =  100 bits (250), Expect = 2e-20
 Identities = 65/220 (29%), Positives = 111/220 (50%)
 Frame = +1

Query: 163 LMITKRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDXXXXXXXXXXXXXX 342
           L++ + ILE+GA  SI   +  SFE Y  QLK YYF    +L ES               
Sbjct: 80  LILARDILEIGAQWSILCKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLL 139

Query: 343 XXXXTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEF 522
                 +FH+EL+ L    K+++ +  + +P+ L+++LMEGSY K +  L  G+     +
Sbjct: 140 SQNRVAEFHTELERLPA--KDIQTNVYIKHPVSLEQYLMEGSYNKVF--LAKGNIPAESY 195

Query: 523 DSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALERNWPIVNSKVY 702
             F DIL   IRDEIA   E +Y+ +  +    +LFF+  K+   +A +R W ++    Y
Sbjct: 196 TFFIDILLDTIRDEIAGCIEKAYEKILFAEATRILFFSTPKKMTDYAKKRGW-VLGPNNY 254

Query: 703 FNNQSKEKADYEDEMMHEEDQKTNIIEKAMDYAISIENIV 822
           ++  S+++   +  +       T + ++ ++YA  +E IV
Sbjct: 255 YSFASQQQKPEDSTI-----PSTELAKQVIEYARQLEMIV 289


>gi|13278567|gb|AAH04075.1| RIKEN cDNA 6720456J22 gene [Mus musculus]
 gi|13543079|gb|AAH05717.1| RIKEN cDNA 6720456J22 gene [Mus musculus]
          Length = 257

 Score =  100 bits (250), Expect = 2e-20
 Identities = 65/220 (29%), Positives = 111/220 (50%)
 Frame = +1

Query: 163 LMITKRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDXXXXXXXXXXXXXX 342
           L++ + ILE+GA  SI   +  SFE Y  QLK YYF    +L ES               
Sbjct: 48  LILARDILEIGAQWSILCKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLL 107

Query: 343 XXXXTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEF 522
                 +FH+EL+ L    K+++ +  + +P+ L+++LMEGSY K +  L  G+     +
Sbjct: 108 SQNRVAEFHTELERLPA--KDIQTNVYIKHPVSLEQYLMEGSYNKVF--LAKGNIPAESY 163

Query: 523 DSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALERNWPIVNSKVY 702
             F DIL   IRDEIA   E +Y+ +  +    +LFF+  K+   +A +R W ++    Y
Sbjct: 164 TFFIDILLDTIRDEIAGCIEKAYEKILFAEATRILFFSTPKKMTDYAKKRGW-VLGPNNY 222

Query: 703 FNNQSKEKADYEDEMMHEEDQKTNIIEKAMDYAISIENIV 822
           ++  S+++   +  +       T + ++ ++YA  +E IV
Sbjct: 223 YSFASQQQKPEDSTI-----PSTELAKQVIEYARQLEMIV 257


>gi|27229063|ref|NP_080821.2| proteasome 26S non-ATPase subunit 8 [Mus musculus]
 gi|26387510|dbj|BAB32006.2| unnamed protein product [Mus musculus]
          Length = 289

 Score =  100 bits (248), Expect = 3e-20
 Identities = 65/220 (29%), Positives = 111/220 (50%)
 Frame = +1

Query: 163 LMITKRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDXXXXXXXXXXXXXX 342
           L++ + ILE+GA  SI   +  SFE Y  QLK YYF    +L ES               
Sbjct: 80  LILARDILEIGAQWSILCKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLL 139

Query: 343 XXXXTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEF 522
                 +FH+EL+ L    K+++ +  + +P+ L+++LMEGSY K +  L  G+     +
Sbjct: 140 SQNRVAEFHTELERLPA--KDIQTNVYIKHPVSLEQYLMEGSYNKVF--LAKGNIPAESY 195

Query: 523 DSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALERNWPIVNSKVY 702
             F DIL   IRDEIA   E +Y+ +  +    +LFF+  K+   +A +R W ++    Y
Sbjct: 196 TFFIDILLDTIRDEIAGCIEKAYEKILFAEATRILFFSTPKKMTDYAKKRGW-VLGPNNY 254

Query: 703 FNNQSKEKADYEDEMMHEEDQKTNIIEKAMDYAISIENIV 822
           ++  S+++   +  +       T + ++ ++YA  +E IV
Sbjct: 255 YSFASQQQKPEDSTIPF-----TELAKQVIEYARQLEMIV 289


>gi|20978554|sp|Q9CX56|PSD8_MOUSE 26S proteasome non-ATPase regulatory subunit 8 (26S proteasome
           regulatory subunit S14)
          Length = 257

 Score =  100 bits (248), Expect = 3e-20
 Identities = 65/220 (29%), Positives = 111/220 (50%)
 Frame = +1

Query: 163 LMITKRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDXXXXXXXXXXXXXX 342
           L++ + ILE+GA  SI   +  SFE Y  QLK YYF    +L ES               
Sbjct: 48  LILARDILEIGAQWSILCKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLL 107

Query: 343 XXXXTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEF 522
                 +FH+EL+ L    K+++ +  + +P+ L+++LMEGSY K +  L  G+     +
Sbjct: 108 SQNRVAEFHTELERLPA--KDIQTNVYIKHPVSLEQYLMEGSYNKVF--LAKGNIPAESY 163

Query: 523 DSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALERNWPIVNSKVY 702
             F DIL   IRDEIA   E +Y+ +  +    +LFF+  K+   +A +R W ++    Y
Sbjct: 164 TFFIDILLDTIRDEIAGCIEKAYEKILFAEATRILFFSTPKKMTDYAKKRGW-VLGPNNY 222

Query: 703 FNNQSKEKADYEDEMMHEEDQKTNIIEKAMDYAISIENIV 822
           ++  S+++   +  +       T + ++ ++YA  +E IV
Sbjct: 223 YSFASQQQKPEDSTIPF-----TELAKQVIEYARQLEMIV 257


>gi|27730991|ref|XP_214888.1| similar to RIKEN cDNA 6720456J22 gene [Mus musculus] [Rattus
           norvegicus]
          Length = 257

 Score =  100 bits (248), Expect = 3e-20
 Identities = 65/220 (29%), Positives = 110/220 (50%)
 Frame = +1

Query: 163 LMITKRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDXXXXXXXXXXXXXX 342
           L++ + ILE+GA  SI   +  SFE Y  QLK YYF    +L ES               
Sbjct: 48  LILARDILEIGAQWSILCKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLL 107

Query: 343 XXXXTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEF 522
                 +FH+EL+ L    K+++ +  + +P+ L+++LMEGSY K +  L  G+     +
Sbjct: 108 SQNRVAEFHTELERLPA--KDIQTNVYIKHPVSLEQYLMEGSYNKVF--LAKGNIPAESY 163

Query: 523 DSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALERNWPIVNSKVY 702
             F DIL   IRDEIA   E +Y+ +  +    +LFF+  K+   +A +R W ++    Y
Sbjct: 164 TFFIDILLDTIRDEIAGCIEKAYEKILFAEATRILFFSTPKKMTDYAKKRGW-LLGPNNY 222

Query: 703 FNNQSKEKADYEDEMMHEEDQKTNIIEKAMDYAISIENIV 822
           ++  S+++   +  +       T +  + ++YA  +E IV
Sbjct: 223 YSFASQQQKPEDSTI-----PSTELARQVIEYARQLEMIV 257


>gi|26341828|dbj|BAC34576.1| unnamed protein product [Mus musculus]
          Length = 289

 Score = 97.4 bits (241), Expect = 2e-19
 Identities = 64/220 (29%), Positives = 110/220 (50%)
 Frame = +1

Query: 163 LMITKRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDXXXXXXXXXXXXXX 342
           L++ + ILE+GA  SI   +  SFE Y  QLK YYF    +L ES               
Sbjct: 80  LILARDILEIGAQWSILCKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLL 139

Query: 343 XXXXTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEF 522
                 +FH+EL+ L    K+++ +  + +P+ L+++LMEGSY K +  L  G+     +
Sbjct: 140 SQNRVAEFHTELERLP--AKDIQTNVYIKHPVSLEQYLMEGSYNKVF--LAKGNIPAESY 195

Query: 523 DSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALERNWPIVNSKVY 702
             F DIL   IRDEIA   E + + +  +    +LFF+  K+   +A +R W ++    Y
Sbjct: 196 TFFIDILLDTIRDEIAGCIEKACEKILFAEATRILFFSTPKKMTDYAKKRGW-VLGPNNY 254

Query: 703 FNNQSKEKADYEDEMMHEEDQKTNIIEKAMDYAISIENIV 822
           ++  S+++   +  +       T + ++ ++YA  +E IV
Sbjct: 255 YSFASQQQKPEDSTI-----PSTELAKQVIEYARQLEMIV 289


>gi|15217661|ref|NP_176633.1| 26S proteasome regulatory subunit (RPN12), putative; protein id:
           At1g64520.1, supported by cDNA: gi_14532465, supported
           by cDNA: gi_15294147 [Arabidopsis thaliana]
 gi|25338454|pir||H96668 protein F1N19.9 [imported] - Arabidopsis thaliana
 gi|6633812|gb|AAF19671.1|AC009519_5 F1N19.9 [Arabidopsis thaliana]
 gi|14532466|gb|AAK63961.1| At1g64520/F1N19_10 [Arabidopsis thaliana]
 gi|15294148|gb|AAK95251.1|AF410265_1 At1g64520/F1N19_10 [Arabidopsis thaliana]
 gi|23505935|gb|AAN28827.1| At1g64520/F1N19_10 [Arabidopsis thaliana]
          Length = 267

 Score = 91.3 bits (225), Expect = 2e-17
 Identities = 70/278 (25%), Positives = 124/278 (44%), Gaps = 5/278 (1%)
 Frame = +1

Query: 4   PSLAELTKSLS---IAFENGDYAACEKLLPPXXXXXXXXXXXXPDLSIQNDIYLNDLMIT 174
           P L E+++       AF   DY  C  LL              P L   +     +L I 
Sbjct: 3   PQLTEVSQQFERFKAAFARKDYNTCSDLLSQLKVLLTKFTSL-PPLFENSPNAAKELTIA 61

Query: 175 KRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDXXXXXXXXXXXXXXXXXX 354
           + I E   + S++T + D+FE  F QLKPYY    +++ +S                   
Sbjct: 62  RDIYEHAVVLSVKTEDQDAFERDFFQLKPYYVDARNRIPQSPQENLILGLNLLRLLVQNR 121

Query: 355 TTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFT 534
             +FH+EL+ L        +D  + + ++L++  MEG+Y +     Q+     + +  F 
Sbjct: 122 IAEFHTELELLSSATL---EDPCIKHAVELEQSFMEGAYNRVLSARQTAPD--ATYVYFM 176

Query: 535 DILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALERN--WPIVNSKVYFN 708
           D+L   IRDEIA  +E +YD++ +S+ + +L F++++E   +  + +  W +    V F 
Sbjct: 177 DLLAKTIRDEIAGCSEKAYDYVSISDARQMLLFSSDQELLTYVTDEHPEWEVKEGFVVF- 235

Query: 709 NQSKEKADYEDEMMHEEDQKTNIIEKAMDYAISIENIV 822
            ++KE A        +E     +I + + YA  +E IV
Sbjct: 236 QKAKETAPC------KEIPSLQLINQTLSYARELERIV 267


>gi|21295912|gb|EAA08057.1| agCP1220 [Anopheles gambiae str. PEST]
          Length = 298

 Score = 88.6 bits (218), Expect = 1e-16
 Identities = 62/223 (27%), Positives = 104/223 (46%), Gaps = 2/223 (0%)
 Frame = +1

Query: 160 DLMITKRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDXXXXXXXXXXXXX 339
           +L+I + ILE+G   SI T N  +FE Y  QLK +Y+  N  + ES              
Sbjct: 89  ELLIARDILEIGVEYSIATKNIPAFERYILQLKWFYYDYNTLIGESKNKYQLLGLNLLFL 148

Query: 340 XXXXXTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISE 519
                  +FH+EL+ L   I  ++ ++ + +P+ L+++LMEG Y K +     G+     
Sbjct: 149 LSQNRVAEFHTELELLPADI--IQTNAFIRHPLALEQYLMEGRYNKIFQ--AKGNVPAES 204

Query: 520 FDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALERNWPIVNSKV 699
           ++ F DIL   +R+EI    E SY+ + L      L   +++E ++F  ++ W +     
Sbjct: 205 YNFFIDILLQTVRNEIGACLESSYERISLQEAAKRLNLKSKEEVKQFGEKKAWKLSPDGF 264

Query: 700 Y--FNNQSKEKADYEDEMMHEEDQKTNIIEKAMDYAISIENIV 822
           Y   N  +K K         E      + E+A+ YA  +E IV
Sbjct: 265 YHFVNELAKPK---------EPIPSQELAEQAIMYARELEMIV 298


>gi|17297985|dbj|BAB78490.1| 26S proteasome regulatory particle non-ATPase subunit12 [Oryza
           sativa (japonica cultivar-group)]
          Length = 267

 Score = 86.7 bits (213), Expect = 4e-16
 Identities = 69/278 (24%), Positives = 123/278 (44%), Gaps = 5/278 (1%)
 Frame = +1

Query: 4   PSLAELTKSLS---IAFENGDYAACEKLLPPXXXXXXXXXXXXPDLSIQNDIYLNDLMIT 174
           P L E+T+  S    AF   D+  C  LL              P    Q    + +L I 
Sbjct: 3   PKLVEVTQLFSRFKAAFARNDFDTCVDLLSQLKVRLTKFPSLPPSFQ-QTPNAVEELKIA 61

Query: 175 KRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDXXXXXXXXXXXXXXXXXX 354
           + I E   + S++  + D+FE  F QLKPYY      +  S                   
Sbjct: 62  RDIYEHAVVLSVKIEDQDAFERDFCQLKPYYMDTCGIIPPSPQEYPILGLNLLRLLVQNR 121

Query: 355 TTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFT 534
             +FH+EL+ L   +  LE+  +  + ++L++  MEG+Y +     Q+       +  F 
Sbjct: 122 IAEFHTELELLP--VTALENPCI-KHAVELEQSFMEGAYNRVLSARQAVPHETYVY--FM 176

Query: 535 DILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALERN--WPIVNSKVYFN 708
           D+L   +RDE+A  +E  YD++ ++  + +L F+++KE  ++  E +  W + +  V+F 
Sbjct: 177 DLLAKTVRDELAGCSEKGYDYMSIAEARQVLMFSSDKELHQYIAEEHPEWEVKDGSVFF- 235

Query: 709 NQSKEKADYEDEMMHEEDQKTNIIEKAMDYAISIENIV 822
               +KA  ++    +E     +I + + YA  +E IV
Sbjct: 236 ----QKA--KETQPCKEIPSLQVINQTLSYARELERIV 267


>gi|3133095|emb|CAA19021.1| 19s proteasome regulatory subunit [Schizosaccharomyces pombe]
          Length = 144

 Score = 79.3 bits (194), Expect = 6e-14
 Identities = 46/131 (35%), Positives = 73/131 (55%)
 Frame = +1

Query: 415 DSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDILKSAIRDEIAKNTELSYD 594
           D  + + I L++ +MEG++ K   +++S   N  EF  F  I+ S +R+EIA   E  Y 
Sbjct: 1   DPYVEWVISLEQNVMEGAFDKVASMIRSC--NFPEFSYFMKIVMSMVRNEIATCAEKVYS 58

Query: 595 FLPLSNIKALLFFNNEKETEKFALERNWPIVNSKVYFNNQSKEKADYEDEMMHEEDQKTN 774
            +PLSN  +LL+  N KETEK A ER W I +  +YF  ++    + ED M+ +E+ +  
Sbjct: 59  EIPLSNATSLLYLENTKETEKLAEERGWDIRDGVIYFPKEA-NALETEDGMLIDEEDELE 117

Query: 775 IIEKAMDYAIS 807
           +   A  + IS
Sbjct: 118 LPPTASKHTIS 128


>gi|27699245|ref|XP_229953.1| similar to 26S proteasome non-ATPase regulatory subunit 8 (26S
           proteasome regulatory subunit S14) (p31) [Rattus
           norvegicus]
          Length = 220

 Score = 73.6 bits (179), Expect = 3e-12
 Identities = 47/143 (32%), Positives = 71/143 (49%)
 Frame = +1

Query: 166 MITKRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDXXXXXXXXXXXXXXX 345
           ++ + ILE+ A  SI   +  SF+ Y  QLK YYF    +L ES                
Sbjct: 77  ILARDILEIRAQWSILCKDIPSFKRYLAQLKCYYFDYKEQLPESAYTHQLLDLNLLFLMS 136

Query: 346 XXXTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFD 525
                +FH+EL+ L    K ++ +  + +P+  +++LMEGSY K +  L  G+     + 
Sbjct: 137 QNRVAEFHTELEGLP--AKGIQTNVYIKHPVSHEQYLMEGSYNKVF--LAKGNIPAERYT 192

Query: 526 SFTDILKSAIRDEIAKNTELSYD 594
            FTDIL   IRDEIA   E +Y+
Sbjct: 193 FFTDILLDTIRDEIAGCIEKAYE 215


>gi|21357229|ref|NP_648904.1| CG4157-PA [Drosophila melanogaster]
 gi|6434966|gb|AAF08395.1|AF145314_1 26S proteasome regulatory complex subunit p30 [Drosophila
           melanogaster]
 gi|7294091|gb|AAF49445.1| CG4157-PA [Drosophila melanogaster]
 gi|19527567|gb|AAL89898.1| RE36854p [Drosophila melanogaster]
          Length = 264

 Score = 71.6 bits (174), Expect = 1e-11
 Identities = 54/221 (24%), Positives = 99/221 (44%), Gaps = 1/221 (0%)
 Frame = +1

Query: 163 LMITKRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDXXXXXXXXXXXXXX 342
           L++ + +LEV    S+ + +  +FE Y  QLK YY+     + ES+              
Sbjct: 56  LILARSVLEVAVEHSVLSKDLLAFERYMAQLKCYYYDYAKIIGESESKYKLLGLNLLYLL 115

Query: 343 XXXXTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEF 522
                + FH+EL+ L   +  ++ +  +   + L++++MEG Y K +      +  +  +
Sbjct: 116 SGNRVSDFHTELELLSVDV--IQHNQFIRPILALEQYIMEGRYNKIFQA--KSTVPVEVY 171

Query: 523 DSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALERNWPIVNSKVY 702
             F D+L   +RDEI    E SYD +   +    L      E + F  +R W +  S  Y
Sbjct: 172 SYFMDLLLETVRDEIGACIEKSYDKISAKDAAKRLNLRVPDEIKAFGAKRQWKLEASGDY 231

Query: 703 -FNNQSKEKADYEDEMMHEEDQKTNIIEKAMDYAISIENIV 822
            F ++S +      E++  E+    + E+ + YA  +E IV
Sbjct: 232 SFTDRSVK----PKELLPSEE----LAEQVLSYARDLEMIV 264


>gi|17535705|ref|NP_496489.1| Proteasome Regulatory Particle, Non-ATPase-like RPN-12 (28.8 kD)
           (rpn-12) [Caenorhabditis elegans]
 gi|3914479|sp|Q23449|PSD8_CAEEL Probable 26S proteasome non-ATPase regulatory subunit 8
 gi|7511025|pir||T27772 26S proteasome regulatory complex chain p31 [similarity] -
           Caenorhabditis elegans
 gi|3881544|emb|CAA93778.1| C. elegans RPN-12 protein (corresponding sequence ZK20.5)
           [Caenorhabditis elegans]
          Length = 250

 Score = 70.5 bits (171), Expect = 3e-11
 Identities = 58/235 (24%), Positives = 107/235 (45%), Gaps = 4/235 (1%)
 Frame = +1

Query: 130 LSIQNDIYLND---LMITKRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESD 300
           LS  +D  LND    + +K + E+  L +I   +F++F++Y NQ+  YY         S+
Sbjct: 33  LSASSD--LNDKQSALASKDLYEISVLLAILKHDFETFDDYINQMHTYY---TMAPENSE 87

Query: 301 XXXXXXXXXXXXXXXXXXTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKA 480
                              + FH  L+ + +  K    ++ +S P+++++ LMEG+Y K 
Sbjct: 88  NKHLMTGLHLMFLLAANRLSDFHMLLEQIPQ--KEQTSNAYISTPVRIEQSLMEGAYNKV 145

Query: 481 WDLLQSGSQNISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKF 660
             +L   +     +  F  I+   IR EIA + E S+  L   +   +L F+N+++ +KF
Sbjct: 146 --VLTEKNIPSPFYTIFIRIMLDTIRREIATSIEKSFKVLTAKDATVMLLFDNDEQMKKF 203

Query: 661 ALERNWPIVNSKVYFNNQ-SKEKADYEDEMMHEEDQKTNIIEKAMDYAISIENIV 822
             ER W +   +  F  + ++EK    D +         +  + + YA  +E IV
Sbjct: 204 GQERKWHLDGERYVFEIEVAQEKPVNLDTV--------RVATQTLFYAKQLEQIV 250


>gi|18463067|gb|AAL72635.1|AF404120_1 proteasome regulatory non-ATP-ase subunit 12 [Trypanosoma brucei]
          Length = 274

 Score = 68.2 bits (165), Expect = 1e-10
 Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 2/180 (1%)
 Frame = +1

Query: 151 YLNDLMITKRILEVGALASIQTFNFDSFENYFNQLKPYYFS-NNHKLSESDXXXXXXXXX 327
           +L ++ +T+ +LE   L S +  +  SFE YFNQL  YY   +  KL ES          
Sbjct: 60  WLEEVTLTREVLEYAVLVSARLEDLASFELYFNQLSVYYTDIDPTKLKESPLYSLILGLN 119

Query: 328 XXXXXXXXXTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQ 507
                      +FH+EL+ +  HI     ++ + + + L+R+LMEGSY K   LL S  Q
Sbjct: 120 LVRLLVDDRIAQFHTELEKVPNHI--YAPNAYVRFAVLLERYLMEGSYSK---LLNSRDQ 174

Query: 508 NIS-EFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALERNWPI 684
             S E+     +L+  +R  +A+    SY  L     + +L  ++     +   +  W +
Sbjct: 175 APSKEYIPIVGMLEKTVRQGVAECIPHSYAKLSFERAQKILMVDSTDAVREIGKQYEWEL 234


>gi|18447010|gb|AAL68096.1| AT18239p [Drosophila melanogaster]
          Length = 262

 Score = 62.0 bits (149), Expect = 1e-08
 Identities = 60/228 (26%), Positives = 95/228 (41%), Gaps = 6/228 (2%)
 Frame = +1

Query: 157 NDLMITKRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDXXXXXXXXXXXX 336
           + L+ ++ +LE+    SI   ++ +FE Y  QL  YY+  +  L  S             
Sbjct: 51  DQLIKSREMLEIAVEHSITIKDYAAFERYMAQLNTYYYDYDKYLESSKHMYKFMGLNLLY 110

Query: 337 XXXXXXTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNIS 516
                    FH EL+ L   +  L  DS +   + L+ + MEG Y K   +LQ+     S
Sbjct: 111 MLATNRLADFHIELERLPTAL--LLHDSFIQPVLALENYYMEGRYNK---ILQAKKSMPS 165

Query: 517 E-FDSFTDILKSAIRDEIAKNTELSY-DFLPLSNIKALLFFNNEKETEKFALERNWPIVN 690
           E + +F DIL +  R+EIA   E SY    P    + L      KE  + A +R W +  
Sbjct: 166 EIYSNFMDILVNTAREEIASCMEKSYLKMAPKLAAQRLGLRPGSKELFELATKRQWCL-- 223

Query: 691 SKVYFNNQSKEKADYEDEMMH----EEDQKTNIIEKAMDYAISIENIV 822
                     E+ +Y+   +H    E+    +I    + YA  +E IV
Sbjct: 224 ---------DEEGNYDYAGLHTRPMEKVPAKDIATHNLTYAQELEKIV 262


>gi|23487539|gb|EAA21082.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 300

 Score = 60.1 bits (144), Expect = 4e-08
 Identities = 56/235 (23%), Positives = 95/235 (40%), Gaps = 12/235 (5%)
 Frame = +1

Query: 154 LNDLMITKRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDXXXXXXXXXXX 333
           +N+L + + ILE G + SI   +  SF  Y  QL  YYF   + L +S            
Sbjct: 80  INELYLAREILEKGVIISIMDNDIKSFTIYMAQLFIYYFDFKNILQKSAKQNAILGVYLL 139

Query: 334 XXXXXXXTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNI 513
                     FH  L+ +    +N   D  + Y ++L++ +M+G +   + L +     +
Sbjct: 140 HLLSSNSIGDFHMLLEIISIEDQN---DPYIKYVLELEQHIMDGYFH--YILKKKDDIPL 194

Query: 514 SEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALERN------ 675
             +  F D L + I+ ++A     S + + L     LL   +E E  +F  E N      
Sbjct: 195 YLYSIFMDRLYNTIKYKLADCIFSSSNSISLLYTCELLKLKDENELYQFIXEYNEIKTAH 254

Query: 676 ------WPIVNSKVYFNNQSKEKADYEDEMMHEEDQKTNIIEKAMDYAISIENIV 822
                 W I ++K+YF NQ +           +E     I+   + YA  +E IV
Sbjct: 255 GEDNLIWEIKDNKIYFKNQIEST---------QELPSIEILNNIIGYATELEKIV 300


>gi|16805212|ref|NP_473240.1| 26S proteasome regulatory subunit S14, putative [Plasmodium
           falciparum 3D7]
 gi|7494228|pir||T18458 26S proteasome regulatory complex chain p31 [similarity] - malaria
           parasite (Plasmodium falciparum)
 gi|3764007|emb|CAA15600.1| 26S proteasome regulatory subunit S14, putative [Plasmodium
           falciparum 3D7]
          Length = 304

 Score = 53.1 bits (126), Expect = 5e-06
 Identities = 67/285 (23%), Positives = 115/285 (40%), Gaps = 11/285 (3%)
 Frame = +1

Query: 1   MPSLAELTKSLSIAFENGDYAACEKLLPPXXXXXXXXXXXXPDLSI-QNDIYLNDLMITK 177
           + +L  L + +SI+    D   C+++L              P + I Q DI   +L+I +
Sbjct: 35  LDNLLNLNEDISISTAC-DINKCKEILGKLKLLIIHLSSVNPLICIGQKDI--RELLIVR 91

Query: 178 RILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDXXXXXXXXXXXXXXXXXXT 357
            ILE G + SI+  +  SF  Y  QL  YYF     L +S                    
Sbjct: 92  GILEKGVIISIRNKDIKSFNIYIAQLFIYYFDYKDILPKSKKQNAIVGLYLLYLLASNSI 151

Query: 358 TKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTD 537
             FH  L+ L     N   D  + Y + +++ +M+G +     L +  +  +  ++SF D
Sbjct: 152 GDFHMTLEILPLEDHN---DIYIKYVLNVEQNIMDGFFHHV--LTKKENIPLYLYESFMD 206

Query: 538 ILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALERNWPIVNSKVYFNNQS 717
            L + IR ++      S + + L     LL  +N++    F ++ N     +K   NNQ 
Sbjct: 207 KLYTTIRFKLIDCIFASTNSIHLLYACELLKLSNQQNLNDFIIQYN----EAK---NNQG 259

Query: 718 KEKADYEDEMMH----------EEDQKTNIIEKAMDYAISIENIV 822
           +  A  E +  H          ++     II  ++ YA  +E IV
Sbjct: 260 EYNAVCEIKDNHIVCKNQTIAVQQLPSLEIINNSIGYATELERIV 304


>gi|15238267|ref|NP_199019.1| putative protein; protein id: At5g42040.1 [Arabidopsis thaliana]
 gi|9757949|dbj|BAB08437.1| contains similarity to 26S proteasome regulatory complex
           subunit~gene_id:MJC20.14 [Arabidopsis thaliana]
          Length = 159

 Score = 50.4 bits (119), Expect = 3e-05
 Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 2/156 (1%)
 Frame = +1

Query: 361 KFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDI 540
           +FH+EL  L        ++  + + ++L++  MEG+Y +     Q+       +  F D+
Sbjct: 16  EFHTELGLLSSATL---ENPCIKHAVELEQSFMEGAYNRVLSARQTAPDETYVY--FMDL 70

Query: 541 LKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALERN--WPIVNSKVYFNNQ 714
           L   IRDEIA  +E +YD L +S    +L F+++++   +  E +  W + +  V F  +
Sbjct: 71  LAKTIRDEIAGCSEKAYDHLSISEGCKMLLFSSDQQLLTYVNEEHPEWEVKDGLVVF-QK 129

Query: 715 SKEKADYEDEMMHEEDQKTNIIEKAMDYAISIENIV 822
           ++E A        +E     +I + + Y   +E I+
Sbjct: 130 TRETAPC------KEIPSLQLINQTLSYTRELERIL 159


>gi|117307|sp|P02889|PSD8_DICDI Vegetative cell protein X (M4 protein)
 gi|72376|pir||QXDO 26S proteasome regulatory complex chain p31 [similarity] - slime
           mold (Dictyostelium discoideum) (fragment)
 gi|4375864|emb|CAA23485.1| unnamed protein product [Dictyostelium discoideum]
          Length = 88

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 31/85 (36%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
 Frame = +1

Query: 355 TTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISE-FDSF 531
           T++FHSE++ ++    NL D+S + +P+ +++ + EGSY K   ++QS S   SE +  F
Sbjct: 9   TSEFHSEIELIE--FNNL-DNSFIKFPLLVEKSITEGSYNK---IIQSRSGVPSEYYQVF 62

Query: 532 TDILKSAIRDEIAKNTELSYDFLPL 606
            DIL  +I+ +IA  +E S+  L L
Sbjct: 63  LDILADSIKQDIANCSEKSFKTLSL 87


>gi|19113542|ref|NP_596750.1| 26s proteasome regulatory subunit mts3 [Schizosaccharomyces pombe]
 gi|5441794|emb|CAB46777.1| 26s proteasome regulatory subunit mts3 [Schizosaccharomyces pombe]
          Length = 159

 Score = 43.5 bits (101), Expect = 0.004
 Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
 Frame = +1

Query: 175 KRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDXXXXXXXXXXXXXXXXXX 354
           + + E G L SIQT + +SF  Y +Q+ P+Y   +  L  S                   
Sbjct: 51  RNVFEYGVLVSIQTCDIESFARYASQVIPFY---HDSLVPSSRMGLVTGLNLLYLLSENR 107

Query: 355 TTKFHSELQYL-DKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQS 498
             +FH+ L+ + DK +   E D  + + I L++ +MEG++ K   +++S
Sbjct: 108 IAEFHTALESVPDKSL--FERDPYVEWVISLEQNVMEGAFDKVASMIRS 154


>gi|23479708|gb|EAA16462.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 235

 Score = 40.4 bits (93), Expect = 0.032
 Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 4/136 (2%)
 Frame = +1

Query: 382 YLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFD-SFTDILKSA-- 552
           YL     N+ DD++    + L   + E  ++K W+ + + S+  S +D SF     +   
Sbjct: 86  YLSLINPNIYDDNIKGI-VYLHDLIKECQFKKLWNCINNKSEENSNYDYSFLQNYNNFTC 144

Query: 553 -IRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALERNWPIVNSKVYFNNQSKEKA 729
            IR  I  +  LS++ + +  I   L   N +E EKF  E  W +   K   N   +E+ 
Sbjct: 145 NIRKYILNSITLSFEKISIKQISEYLNMENVEEIEKFLNENKWTVKKIK---NKDGEEQT 201

Query: 730 DYEDEMMHEEDQKTNI 777
              +E +     + NI
Sbjct: 202 ICINENIENIQNRKNI 217


>gi|23482331|gb|EAA18343.1| chloroquine resistance marker protein, putative [Plasmodium yoelii
            yoelii]
          Length = 3604

 Score = 38.1 bits (87), Expect = 0.16
 Identities = 55/233 (23%), Positives = 101/233 (43%), Gaps = 4/233 (1%)
 Frame = +1

Query: 133  SIQNDIYLNDLMITKRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDXXXX 312
            ++QN + ++D+ +   +L + +L+  +   + +++ Y   +K YY +NN+  +E      
Sbjct: 2389 TLQNYLKISDMKLFN-LLSLSSLSIFKDSVYFNYDQYNQTMKNYYNNNNYNPNED----- 2442

Query: 313  XXXXXXXXXXXXXXTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLL 492
                          T  + +  QYL    K + D+S       L +  M+ S  K  D L
Sbjct: 2443 -------------FTDLYQNFDQYLLGEGKGIFDNS------GLTKSCMKKSLIKENDDL 2483

Query: 493  QSGSQNISEFDSFTD--ILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFAL 666
             S ++N  +    +D    +++I +E A++ E  Y    +  I+ L   N ++E +K   
Sbjct: 2484 NSEAKNEKDQIDVSDNGTKQNSINEETAQDAEREY----VDKIREL--DNIKEENDK--- 2534

Query: 667  ERNWPIVNSKVYFNNQSKE--KADYEDEMMHEEDQKTNIIEKAMDYAISIENI 819
              N   VN       + KE  K  Y+ E M  E ++TN +E        IENI
Sbjct: 2535 AENLSHVNKSEADQTEQKENNKNSYDGENMLLELEETNKVENMPIDIFDIENI 2587


>gi|23508014|ref|NP_700684.1| hypothetical protein [Plasmodium falciparum 3D7]
 gi|23495076|gb|AAN35408.1|AE014832_30 hypothetical protein [Plasmodium falciparum 3D7]
          Length = 4431

 Score = 36.6 bits (83), Expect = 0.46
 Identities = 42/196 (21%), Positives = 79/196 (40%), Gaps = 12/196 (6%)
 Frame = +1

Query: 226  DSFENYFNQLKPYYFSNNHKLSE-----SDXXXXXXXXXXXXXXXXXXTTKFHSELQYLD 390
            + F +Y+++   YYF NNH+        ++                    K+H    Y +
Sbjct: 992  NKFHDYYDKRDKYYFENNHRNDHYTSDLNNDDNNKYNIYDNNKYSIYDNNKYHI---YDN 1048

Query: 391  KHIKNLEDDSLLSYPIKLDRWL--MEGSYQKAWDLLQSGSQNISEFDSFT---DILKSAI 555
                N +DD   S P  LD  L  +  + +    LL + S+  S   +     D++K+++
Sbjct: 1049 NESNNKKDDFYYSIPTNLDISLKCINRNERHINSLLFNHSKRKSTLSNILIKHDMIKNSV 1108

Query: 556  RDEIAKNTELSYDFLPLSNIKALLFFNNEKETEK--FALERNWPIVNSKVYFNNQSKEKA 729
               I  N + +Y++     I+    +NN+   EK  + L+    + N K   NN   +  
Sbjct: 1109 SKHIL-NNDYAYEYDKKEEIE--YNYNNKDNCEKNIYVLD----VKNKKQNNNNNMNDDD 1161

Query: 730  DYEDEMMHEEDQKTNI 777
            D  + M  ++D   N+
Sbjct: 1162 DDNNNMNDDDDDNNNM 1177


>gi|126505|sp|P18299|LUXA_KRYAS Alkanal monooxygenase alpha chain (Bacterial luciferase alpha
           chain)
 gi|320435|pir||A44995 alkanal monooxygenase (FMN-linked) (EC 1.14.14.3) alpha chain -
           flashlight fish symbiont bacterium
 gi|213346|gb|AAA91213.1| luciferase-alpha subunit
          Length = 357

 Score = 35.8 bits (81), Expect = 0.78
 Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 11/151 (7%)
 Frame = +1

Query: 397 IKNLEDDSLLSYPIK--LDRWLMEGSYQKAWDLLQSGSQNISEF-DSFTDIL-KSAIRDE 564
           ++ LED +LL    K      +  G Y K + +  +   N  E  +S+ DI+ K  I   
Sbjct: 84  VRQLEDVNLLDQMSKGRFKFGICRGLYDKDFRVFGTDMSNSRELMNSWYDIMTKGMIEGH 143

Query: 565 IAKNTE-LSYDFLPLSNIK------ALLFFNNEKETEKFALERNWPIVNSKVYFNNQSKE 723
           ++ + E + +  + +S          +        T ++A ER  PI+ S +  NN+ K 
Sbjct: 144 VSSDNEHIKFPKVKVSPNSYTQRGAPVYVVAESASTTEWAAERGLPIILSWIINNNEKKS 203

Query: 724 KADYEDEMMHEEDQKTNIIEKAMDYAISIEN 816
           + D  +E+  E     + I+  M Y  S+++
Sbjct: 204 QLDLYNEIALEHGHDVSNIDHCMSYITSVDH 234


>gi|17538868|ref|NP_502249.1| Ion transport protein with ankyrin domain(s) [Caenorhabditis
           elegans]
 gi|7496660|pir||T19552 hypothetical protein C29E6.2 - Caenorhabditis elegans
 gi|3874536|emb|CAA96603.1| Hypothetical protein C29E6.2 [Caenorhabditis elegans]
          Length = 1188

 Score = 35.4 bits (80), Expect = 1.0
 Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
 Frame = +1

Query: 409 EDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDILKS--AIRDEIAKNTE 582
           EDD+ ++ P+ L    + GS +   +L+++ S N+++ D   + +    A+R E  +  E
Sbjct: 185 EDDNKMT-PLLLA--CVHGSQEIIQELIKANS-NVTKRDQRLNTVFHIVALRGE-PEYLE 239

Query: 583 LSYDFLPLSNIKALLFFNNEKETE-KFALERNWPIVNSKV--YFNNQSKEKADYEDEMMH 753
           +  D  P+  IKAL  FNNEK+T  + A+E N P    K+       S +  D E E++H
Sbjct: 240 MMMDHDPVEAIKALNLFNNEKKTPLRMAVEGNHPETLKKILQMEKKNSCKWMDREKELIH 299

Query: 754 EEDQK 768
              +K
Sbjct: 300 FAAEK 304


>gi|23486317|gb|EAA20771.1| Ubiquitin carboxyl-terminal hydrolase family 2, putative [Plasmodium
            yoelii yoelii]
          Length = 2798

 Score = 34.7 bits (78), Expect = 1.7
 Identities = 29/130 (22%), Positives = 63/130 (48%)
 Frame = +1

Query: 403  NLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDILKSAIRDEIAKNTE 582
            N+ D S +   IK    +++ + +K+ +     S     +DS++D   S++  E +  T 
Sbjct: 728  NISDKSDIENIIKKRNSIIKNNEEKSENYYDVSSY----YDSYSDDNLSSLSIESSYTTS 783

Query: 583  LSYDFLPLSNIKALLFFNNEKETEKFALERNWPIVNSKVYFNNQSKEKADYEDEMMHEED 762
                ++  S      F+  +K+ +K     N   ++   Y N ++KE  DY++ ++ EE+
Sbjct: 784  ----YVSCSESSGSCFYKRKKKKKKKTGNTN---IDGNYYENERTKE-IDYKNILIEEEN 835

Query: 763  QKTNIIEKAM 792
            +K NI+  ++
Sbjct: 836  EKKNILPTSL 845


>gi|730856|sp|P40418|SWI6_KLULA Regulatory protein SWI6 (Cell-cycle box factor, chain SWI6)
           (Trans-acting activator of HO endonuclease gene) (MBF
           subunit P90)
 gi|480316|pir||S36657 SWI6 protein - yeast (Kluyveromyces marxianus var. lactis)
 gi|397612|emb|CAA52345.1| SWI6 [Kluyveromyces lactis]
          Length = 769

 Score = 34.3 bits (77), Expect = 2.3
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
 Frame = +1

Query: 388 DKHIKNLEDDSLLSYPIKLD------RWLMEGSYQKAWDLLQ----SGSQNISEFDSFTD 537
           D  ++NL+D     + I +D      RW+      + WDLLQ    SGS+N+++ D   +
Sbjct: 46  DPLVENLDDMVTSQFNILIDTDRSGTRWITLQKAHELWDLLQIKDDSGSENLTDHDDDNE 105

Query: 538 ILKSAIRDEIAKNTE 582
              + + D+  K  E
Sbjct: 106 ANHNGVEDDGQKTPE 120


>gi|26553946|ref|NP_757880.1| cytosine-specific DNA methyltransferase [Mycoplasma penetrans]
 gi|26453954|dbj|BAC44284.1| cytosine-specific DNA methyltransferase [Mycoplasma penetrans]
          Length = 395

 Score = 33.9 bits (76), Expect = 3.0
 Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 23/174 (13%)
 Frame = +1

Query: 370 SELQYLDKHIKNLEDDSLLS---YPIKLDRW--------LMEGSYQKAWDL-LQSGSQNI 513
           S L Y  KH  NL D   ++   +P  +D +        L     QK  D  L + S  +
Sbjct: 99  SYLNYAKKHFNNLFDIKKVNKDNFPKNIDIFTYSFPCQDLSVQGLQKGIDKELNTRSGLL 158

Query: 514 SEFDSFTDILKSAI-RDEIAKNTELSYDFLPLSNIKALLFFNNEK-------ETEKFALE 669
            E +   + +K++  ++E+ K       +L + N+K LL   N+K       + EKF  +
Sbjct: 159 WEIERILEEIKNSFSKEEMPK-------YLLMENVKNLLSHKNKKNYNTWLKQLEKFGYK 211

Query: 670 RNWPIVNSKVYFNNQSKEKA---DYEDEMMHEEDQKTNIIEKAMDYAISIENIV 822
               ++NSK + N Q++E+       D+ + +   K   +EK  +    I++I+
Sbjct: 212 SKTYLLNSKNFDNCQNRERVFCLSIRDDYLEKTGFKFKELEKVKNPPKKIKDIL 265


>gi|23491039|gb|EAA22673.1| dentin sialophosphoprotein precursor [Plasmodium yoelii yoelii]
          Length = 1153

 Score = 33.9 bits (76), Expect = 3.0
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = +1

Query: 379 QYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDILKSAIR 558
           ++++K+IKNLEDD    + + +  +     YQ  +  +    Q  + F    DI+     
Sbjct: 28  KFVEKNIKNLEDDITKIFYLDIGIYFKNKIYQHIYSFISFFKQVENPFTQHNDIINMK-N 86

Query: 559 DEIAKNTE-LSYDFLPLSNIKALLFFNN 639
           D I KN   L   +    N + ++F NN
Sbjct: 87  DNIEKNKPLLDSSYFDNINNQIVVFINN 114


>gi|27468046|ref|NP_764683.1| ebhA protein [Staphylococcus epidermidis ATCC 12228]
 gi|27315591|gb|AAO04725.1|AE016747_222 ebhA protein [Staphylococcus epidermidis ATCC 12228]
          Length = 9439

 Score = 33.5 bits (75), Expect = 3.9
 Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 6/106 (5%)
 Frame = +1

Query: 472  QKAWDLLQSGSQNISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKET 651
            QK  D      Q I+ F   T+  K A+ + I + T  +     LS+ K   F N + E 
Sbjct: 6015 QKLQDAKTDAKQQITNFTGLTEPQKQALENIINQQTSRANVAKQLSHAK---FLNGKMEE 6071

Query: 652  EKFALERNWPIVNSKVYFNNQSKEKADYE------DEMMHEEDQKT 771
             K A+ +   +  +  Y N    EK  YE       E+++ E+  T
Sbjct: 6072 LKVAVAKASLVRQNSNYINEDVSEKEAYEQAIAKGQEIINSENNPT 6117


>gi|21288948|gb|EAA01241.1| ebiP8479 [Anopheles gambiae str. PEST]
          Length = 664

 Score = 33.5 bits (75), Expect = 3.9
 Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 10/113 (8%)
 Frame = +1

Query: 436 IKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDILKSAIRDEIAKNTEL--SYDFLPLS 609
           I LD WLMEGS ++  +     S+     +  T I++  I  +IA   E+  + D    +
Sbjct: 258 IALDVWLMEGSCEETPENQPLVSREQVSEEDHTLIIQKMINGKIATKEEILEALDRNEYN 317

Query: 610 NIKALLFF--------NNEKETEKFALERNWPIVNSKVYFNNQSKEKADYEDE 744
           +I A  F         + ++E +K   E   P+ NS     N  K +A+ EDE
Sbjct: 318 HITATYFLLAERKLRAHRQEEAQKRKPELTLPVSNSTRLLQNFKKNEAN-EDE 369


>gi|11359311|pir||T43527 sp8 protein - fission yeast (Schizosaccharomyces pombe)  (fragment)
 gi|2293505|gb|AAB65416.1| Sp8 [Schizosaccharomyces pombe]
          Length = 1173

 Score = 33.1 bits (74), Expect = 5.0
 Identities = 45/229 (19%), Positives = 87/229 (37%), Gaps = 8/229 (3%)
 Frame = +1

Query: 157 NDLMITKRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDXXXXXXXXXXXX 336
           N  M+  ++ E+  +  ++   F + E  F Q K   +S    L ES             
Sbjct: 319 NQQMMEIKLQELNGVIELEKQRFSTLEAKFTQQKNTSYSEREALLESSLSDLQSKH---- 374

Query: 337 XXXXXXTTKFHSELQYLDKHIKNLEDDSLLSYPI------KLDRWLMEGSYQKAWDLLQS 498
                  T   S+  Y  ++I+ L+  S L+  +      + D + ++ S     + L+ 
Sbjct: 375 -------TSLESQYNYSLRNIEQLQAASKLAEEMVERVKTEYDEYRLQTSESLEKNHLKI 427

Query: 499 GSQNISEFDSFTDILKSAIRDE-IAKNTELSYDFLPLSNIKALLFFNNEKETEKFALERN 675
            S          +I  S++R E I K++E     L   N       ++ +  EK  LE+ 
Sbjct: 428 TSLEQRIVILQDEIASSSLRCENITKDSETRVALLLEENKHLNNELSSHRNAEKQHLEKE 487

Query: 676 WPIVNSKVYFNNQ-SKEKADYEDEMMHEEDQKTNIIEKAMDYAISIENI 819
                  +       K + DYE E++   D ++ + +   DY  ++E +
Sbjct: 488 NDYKQQLLLVTEDLRKTREDYEKELLRHADARSTLQKLREDYTKALEQV 536


>gi|28922192|gb|EAA31441.1| predicted protein [Neurospora crassa]
 gi|28950154|emb|CAD71012.1| hypothetical protein [Neurospora crassa]
          Length = 485

 Score = 33.1 bits (74), Expect = 5.0
 Identities = 27/126 (21%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
 Frame = +1

Query: 484 DLLQSGSQNISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEK------ 645
           DL     +++S+ +   D       + + +  +   D+ P+S+++   F+N+E+      
Sbjct: 231 DLEDDLEEDLSDLEDLED-------EHLEEKDDSEDDWDPISDLEDFSFYNDEEHDDEEH 283

Query: 646 ETEKFALERNWPIVNSKVYFNNQ-------SKEKADYEDEMMHEEDQKTNIIEKAMDYAI 804
           + E+   E +    +    +NN+       + E+ D E+    E D  ++IIE   DY +
Sbjct: 284 DDEEHDDEEHDDEEHDDEEYNNEEHDDEEHNNEEHDDEEHDADEHDYYSDIIEGLSDYEL 343

Query: 805 SIENIV 822
            I NI+
Sbjct: 344 HIRNII 349


>gi|19115004|ref|NP_594092.1| myosin-like coiled-coil protein sp8 [Schizosaccharomyces pombe]
 gi|15213925|sp|Q9UTK5|ALM1_SCHPO Abnormal long morphology protein 1 (Sp8)
 gi|11359202|pir||T50073 myosin-like coiled-coil protein sp8 [imported] - fission yeast
            (Schizosaccharomyces pombe)
 gi|6523774|emb|CAB62414.1| coiled-coil protein (PMID 10660053); medial region associated during
            mitosis (PMID 10660053); deletion mutant results in
            elongated cells (PMID 10660053); possibly involved in
            cytokinesis; non-essential (PMID 10660053); deletion
            mutant results in sporulation defects (non-germinating
            spores) (PMID 10660053); heterozygous mutant spores
            germinated but produced smaller colonies (PMID 10660053);
            similar to S. cerevisiae MLP1 [Schizosaccharomyces pombe]
          Length = 1727

 Score = 33.1 bits (74), Expect = 5.0
 Identities = 45/229 (19%), Positives = 87/229 (37%), Gaps = 8/229 (3%)
 Frame = +1

Query: 157  NDLMITKRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDXXXXXXXXXXXX 336
            N  M+  ++ E+  +  ++   F + E  F Q K   +S    L ES             
Sbjct: 873  NQQMMEIKLQELNGVIELEKQRFSTLEAKFTQQKNTSYSEREALLESSLSDLQSKH---- 928

Query: 337  XXXXXXTTKFHSELQYLDKHIKNLEDDSLLSYPI------KLDRWLMEGSYQKAWDLLQS 498
                   T   S+  Y  ++I+ L+  S L+  +      + D + ++ S     + L+ 
Sbjct: 929  -------TSLESQYNYSLRNIEQLQAASKLAEEMVERVKTEYDEYRLQTSESLEKNHLKI 981

Query: 499  GSQNISEFDSFTDILKSAIRDE-IAKNTELSYDFLPLSNIKALLFFNNEKETEKFALERN 675
             S          +I  S++R E I K++E     L   N       ++ +  EK  LE+ 
Sbjct: 982  TSLEQRIVILQDEIASSSLRCENITKDSETRVALLLEENKHLNNELSSHRNAEKQHLEKE 1041

Query: 676  WPIVNSKVYFNNQ-SKEKADYEDEMMHEEDQKTNIIEKAMDYAISIENI 819
                   +       K + DYE E++   D ++ + +   DY  ++E +
Sbjct: 1042 NDYKQQLLLVTEDLRKTREDYEKELLRHADARSTLQKLREDYTKALEQV 1090


>gi|14520330|ref|NP_125805.1| molybdenum cofactor biosynthesis protein [Pyrococcus abyssi]
 gi|18203544|sp|Q9V2G2|MOAA_PYRAB Probable molybdenum cofactor biosynthesis protein A
 gi|7451233|pir||E75198 molybdopterin biosynthesis protein moaA PAB2273 - Pyrococcus abyssi
           (strain Orsay)
 gi|5457545|emb|CAB49036.1| moaA molybdenum cofactor biosynthesis protein [Pyrococcus abyssi]
          Length = 306

 Score = 33.1 bits (74), Expect = 5.0
 Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
 Frame = +1

Query: 385 LDKHIKNLEDDSLLSYPIKLDRWLMEG-SYQKAWDLLQSGSQNISEFDSFTDILKSAIRD 561
           LD+ IK +E  + L YP+KL+  +M G +  + WDL++       + ++   +++  +  
Sbjct: 132 LDQVIKGIEKATKLFYPVKLNMVVMRGINDDEIWDLIRFA----GKVNAILQLIEIEVPR 187

Query: 562 EIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALE 669
           E+  +      F PL  +        E+E EK A+E
Sbjct: 188 EMENSQFFKDFFYPLKPL--------EEEFEKIAVE 215


>gi|23612672|ref|NP_704233.1| hypothetical protein [Plasmodium falciparum 3D7]
 gi|23498971|emb|CAD51050.1| hypothetical protein [Plasmodium falciparum 3D7]
          Length = 2110

 Score = 32.7 bits (73), Expect = 6.6
 Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
 Frame = +1

Query: 607 SNIKALLFFNNEKET---EKFALERNWP--IVNSKVYFNNQSKEKADYEDEMMHEEDQKT 771
           +N K  ++ NN +E    E ++ E + P    + + Y ++ + E+ +Y++E   EE +K+
Sbjct: 96  NNGKPSVYVNNGEEEYYEEVYSEEEHSPDEYADGEYYDDDGNYEEVNYDEEYYEEEGEKS 155

Query: 772 -NIIEKAMDYA 801
            N++EK  DYA
Sbjct: 156 KNVLEKYNDYA 166


>gi|15616106|ref|NP_244411.1| phage-related protein [Bacillus halodurans]
 gi|25349610|pir||H84092 phage-related protein BH3544 [imported] - Bacillus halodurans
           (strain C-125)
 gi|10176168|dbj|BAB07263.1| phage-related protein [Bacillus halodurans]
          Length = 320

 Score = 32.7 bits (73), Expect = 6.6
 Identities = 21/81 (25%), Positives = 45/81 (55%)
 Frame = +1

Query: 457 MEGSYQKAWDLLQSGSQNISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFN 636
           ++ SY++  D L    + ISEF+     +++ +++E+    E +Y F+P   ++   F++
Sbjct: 227 LDRSYKEKLDRLVELKRIISEFERDKKEIENELKNEL---KEATYGFVPGYRVEWKQFYS 283

Query: 637 NEKETEKFALERNWPIVNSKV 699
           N  +T+K  L+  +P +  KV
Sbjct: 284 NRVDTKK--LKSEFPNIYEKV 302


>gi|23510171|ref|NP_702837.1| hypothetical protein [Plasmodium falciparum 3D7]
 gi|23498253|emb|CAD49224.1| hypothetical protein [Plasmodium falciparum 3D7]
          Length = 569

 Score = 32.7 bits (73), Expect = 6.6
 Identities = 19/79 (24%), Positives = 44/79 (55%)
 Frame = +1

Query: 541 LKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALERNWPIVNSKVYFNNQSK 720
           L++   + I K  ++ Y+++ ++         N+K+ +K   ++   I  ++++FN+  K
Sbjct: 103 LRATPLETIYKYDDVKYEYMNVNK--------NDKKEKKKKKKKQKKI--NEIHFNDHHK 152

Query: 721 EKADYEDEMMHEEDQKTNI 777
           EK   +++  HEE++K NI
Sbjct: 153 EKETDDEKGTHEENEKENI 171


>gi|27671376|ref|XP_224888.1| similar to AT2 receptor-interacting protein 1 [Homo sapiens]
           [Rattus norvegicus]
          Length = 550

 Score = 32.7 bits (73), Expect = 6.6
 Identities = 42/186 (22%), Positives = 79/186 (42%), Gaps = 27/186 (14%)
 Frame = +1

Query: 247 NQLKPYYFSNNHKLS-----ESDXXXXXXXXXXXXXXXXXXTTKFHSELQYLDKH--IKN 405
           N+LK +Y +   KL      E++                  TTK   E  + +K   +K 
Sbjct: 301 NRLKEFYTAECEKLQSIYIEEAEKYKTQLQEQFDNLNAAHETTKLEIEASHSEKVELLKK 360

Query: 406 LEDDSLLSYPIK----LDRWLMEGSYQKAWDLLQSGSQNI-SEFDSFTDILKSAIRDEIA 570
             + SL    IK    +++ L+E    +  + L+    ++ SE D+  + LKS  + +++
Sbjct: 361 TYETSLSGKEIKKSHEMEKKLLENLLNEKQESLEKQINDLKSENDALNERLKSEEQKQLS 420

Q